Plasmids and Cultures

This database contains entries for 3,572 known and predicted gene coding sequences in Synechocystis sp PCC 6803 based on the Kazusa genome sequence and nomenclature (http://genome.microbedb.jp/cyanobase/GCA_000009725.1). Plasmids for generating marked mutants and mutant strains can be searched for by gene Name/Accession (e.g. 'sll1226' or '1513_sll1226-sacB'),  gene homology (e.g. 'hydrogenase large subunit'), Gene ID (e.g. hoxH), or by a portion of the gene coding sequence Sequence (CDS).

Please note, the library is still being completed. Plasmids and/or marked mutants may not be available. Users can also search for available materials by Plasmids made or Mutant made.

Plasmids, mutants and the unmarking spacer plasmid pUC19K-UL are currently available on request. Regardless of the segregation status of the mutant, open reception of a cyanobacterial mutant strain we recommend 1-2 cycles of restreaking on a selection plate containing kanamycin (100 μg/ml).

Name CDS Gene Homology Gene ID Sort descending
1646_slr1982-sacB ATGGAATCTATGGCTAAGGTTCTCC… response regulator
1710_sll1170-sacB ATGTCCTCCTATCTTGTCAACGAAA… diguanylate cyclase
1711_sll1169-sacB ATGACCAATAATCCTCCCATAAAAT… Crp/Fnr family transcriptional regulator
1521_ssr2227-sacB ATGCCATCTTTTATTTACAGCGCAC… transposase
1585_ssl2471-sacB ATGGGTTGGTTGATTAATCCGAAAG… Endonuclease, Uma2 family
1395_slr2084-sacB ATGGCCGTTAATCTAGAAACTCGCA… Uma2 family endonuclease
1459_sll1411-sacB ATGTCTAAATCTCCCAATCGGGAAT… DUF86 domain-containing protein
1333_slr1721-sacB ATGATGGAACGTTTTTCCCCTACTA… hypothetical protein
1143_ssl3829-sacB ATGGTCGATCCACTGATGTACCAAG… chlororespiratory reduction protein 7
1017_sll0875-sacB ATGGACAATTCCCTGCTCAGCGAAA… TIGR00297 family protein
1081_slr1864-sacB ATGAATTCATTCTTGATTATTATTT… AEC family transporter
0577_ssr1698-sacB ATGGCTGATCCCCTCACCCCTGCTA… HugZ family protein
0387_sll0650-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
0451_slr1045-sacB ATGTCGGATCGAGGCTCTCGCCACT… ABC transporter permease
0261_sll1200-sacB ATGGGTCAGTATTCTGCGGTTCTGT… MFS transporter
0135_sll0225-sacB GTGGGGATTAATTTGCCCCAGCCCT… hypothetical protein
3505_slr6050-sacB ATGAAATTGAACCGTACAAGTACCC… hypothetical protein
3379_slr5056-sacB GTGTTTCGGGGTTGCCTAGCCAAAG… glycosyltransferase
3443_ssr5120-sacB GTGCCACTAAATATAGACCCCACAG… no conserved domains
3317_sll8043-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
3127_slr1189-sacB GTGGGAGGAACAACAGGCGGTGGAA… homocysteine S-methyltransferase
3191_slr7023-sacB ATGCCTAAACTTAAAAAGCTTACTC… hypothetical protein
3001_slr1570-sacB GTGCTCTACAAAATTCGCCACTATC… TIGR00266 family protein
2939_slr1451-sacB GTGACCCAGGTTTGGTTTCCCTCCA… hypothetical protein
2749_sll0783-sacB ATGCCAGAGGTAACTAAGCCAGCTC… MSMEG_0572 family nitrogen starvation response protein
2623_slr0513-sacB ATGACAACTAAGATTTCCCGGCGGA… Fe(3+) ABC transporter substrate-binding protein
2687_sll0092-sacB ATGACAAAGACAAGAGAGGCGAAAA… transposase
2561_ssr1425-sacB ATGTGTATTTGTGTGAACTGCCATT… hypothetical protein
2309_ssr0109-sacB ATGAGTGATTTACCCACCCCGGAAG… Cyanobacterial Signature Protein
2119_slr0364-codA ATGCCTAACTCGACCTTGTTCGTCC… DUF 4347, Ig-like domains, Ca2+-stabilized adhesin repeats (multiple)
2057_slr0325-sacB ATGATTCGTCCAGTTCCCGATGCTA… MEKHLA domain-containing protein
1867_sll1532-sacB ATGTTTAAGCCCCTTTTTCCCCTGA… hypothetical protein
1931_sll0260-sacB ATGTTTTCCTCTTCTGTTGAGCTGG… HlyC/CorC family transporter, hemolysin
1741_sll1102-sacB GTGGACAAATTACTCAAAATTGCCC… TRAP transporter small permease subunit
1615_sll1892-sacB ATGATTACCCCACCCAGCTCACCCA… hypothetical protein
1427_slr1503-sacB ATGACAATTAGCACCACAGATACTT… aldo/keto reductase
1301_slr1990-sacB GTGATTCCCCTTTTAACCACCGCCT… Cyanobacterial Signature Protein
1175_slr1818-sacB ATGACCACCACCCTCGACGAAGTGC… hypothetical protein
1239_slr0869-sacB ATGTCCAAGATTGCGCCCCAATGTC… hypothetical protein
0923_slr1218-sacB ATGGTTATTAGCTCACGTCCCTTAA… DUF4168 domain-containing protein
0797_slr1196-sacB ATGTATCCATCCTCGTCCCCGGGCC… hypothetical protein
0861_sll1726-sacB ATGATGGCCGAAATTTTCTCTGATC… phosphotransferase
0671_slr2005-sacB ATGAAACGACGAAAATTTATTCGTA… hypothetical protein
0735_sll1068-sacB ATGGCATCAACTGTAAATCGCCTTT… hypothetical protein
0483_slr1763-sacB ATGCAGTGCCGTGTTTGTGATTCTA… class I SAM-dependent methyltransferase
0357_slr1081-sacB ATGACCCTCACCGTTGCCATTCCCC… Uma2 family endonuclease
0041_slr1495-sacB ATGACATTAATTTCGTTAACTCCCC… ATP-dependent DNA helicase
0105_ssl1326-sacB ATGTCGAAGTCTAGTAACTTAAATT… CopG family transcriptional regulator
3473_ssl6018-sacB ATGCTCAAATTTATAGGTATTGCAT… hypothetical protein
3537_ssl6082-sacB ATGAGTGGCCGAGGTCGTCCTGGTG… hypothetical protein
3411_slr5088-sacB ATGAAGTTAATGGTTATTGGTGCAA… SDR family oxidoreductase
3285_sll8011-sacB ATGTTAGGTTTTCTATTGGATGAAC… hypothetical protein
3159_sll0563-sacB ATGTCAACCCTACTTACCGACCCCC… hypothetical protein
3223_sll7055-sacB GTGGGCTCTAGTTACCCCTTTACCT… hypothetical protein
3033_sll0735-sacB ATGGCTCTTGGCTATGTTGCCCTTG… glycoside hydrolase family 57 protein
2907_sll0528-sacB ATGTTAAGCCTCAGTTTAGGGGGGC… zinc metalloprotease
2971_sll0625-sacB ATGCCCAATCCTTCTTTCCTGCCTC… class I SAM-dependent methyltransferase
2781_sll0668-sacB ATGATGGACTATTCCAGAATAGAAA… transposase
2719_slr0318-sacB ATGAAAAACAAGATGAAACAGGACA… endoribonuclease L-PSP
2529_slr0575-sacB ATGCTTCCTAAAATTTCTTTGGCCG… thylakoid membrane protein
2467_ssr0332-sacB ATGGGCGAATCAAAGCGTCGTAAAC… Cyanobacterial Signature Protein
2277_ssl0787-sacB ATGGCCAGCGGCACTGACCCCGGTT… hypothetical protein
2089_sll0172-codA ATGAAAATTAATTTAATTTTTATGA… hypothetical protein
1899_slr0443-sacB GTGTTTGTTTGCGAACAGCCCATCT… hypothetical protein
1837_sll0910-sacB ATGACTGATAACTACAAACAAAATT… tetratricopeptide repeat protein
1647_slr1983-sacB ATGATGAATCCTTCTATTAATTCAG… regulatory components of sensory transduction system
1838_sll0909-sacB ATGGACGACCTCACCATCTACACAA… DnaJ family molecular chaperone
1648_sll1870-sacB ATGACTTCTTTGATTAAATTAATCG… methionine ABC transporter ATP-binding protein
1712_slr1285-sacB GTGAATGAAGTTTGCCTAAAGTTGA… sensory transduction histidine kinase
1522_slr1334-sacB ATGGTTTACACTCCTGCTCCGATTA… phosphoglucosamine mutase
1586_sll1250-sacB GTGGAGTGTCGAGGCGAATCTAAAA… Endonuclease, Uma2 family
1460_ssl2749-sacB ATGAAATGCCAATCAGTCCTGCAAT… DNA polymerase subunit beta
1018_slr0876-sacB ATGAGTGCATTGAACCATCAAATCA… NAD(P)/FAD-dependent oxidoreductase
1082_slr1865-sacB GTGTTAAACATATGGTGGAGTGAAG… carbohydrate ABC transporter substrate-binding protein
0956_ssr2062-sacB ATGAAAACCGCTAACTTTATCACCT… hypothetical protein
0640_sll1284-sacB ATGGCTCTACATTTTTCGGCGATCG… serine esterase
0704_slr2030-sacB ATGAGTGAAGTTTCTCTGCGTCCCG… TIGR03279 family radical SAM protein
0578_sll0995-sacB ATGACCGTAGCCCTCGACCGAGAAA… Uma2 family endonuclease
0326_slr1610-sacB GTGGCCCCAAGCAATTACCGAATTA… class I SAM-dependent methyltransferase
0136_sll0224-sacB ATGAAAAAATTTGCCTGTTTAGCCT… amino acid ABC transporter substrate-binding protein
3506_slr6051-sacB ATGAAAAGAGATATGGAATTAATCA… DUF2513 domain-containing protein
3380_sll5057-sacB ATGGCTAGCACTATTCAACTGATTG… STAS domain-containing protein
3444_ssr5121-sacB ATGCTCAAATTTATAGGCATTGCAT… hypothetical protein
3318_slr8044-sacB ATGGGATCTATGACCGCCGAAGAAG… hypothetical protein
3128_sll1107-sacB ATGGTCAATATTTTCAGAATTTGGG… ABC transporter permease
3192_slr7024-sacB ATGACAATTTATGCCCTAGAACATC… DUF262 domain-containing protein
3002_slr1571-sacB ATGAACATTAAACTTCTCAATTCCC… TIGR00266 family protein
3066_slr1657-sacB ATGACTACGACAGAATTAACGGCGG… PleD gene product
2876_sll0494-sacB ATGGTAGCAAGAGCTATTTTGCTGC… hypothetical protein
2940_sll1367-sacB ATGGCTAAACGATCGCCTGCTTTAT… Crp/Fnr family transcriptional regulator
2750_slr0801-sacB ATGAAAAAAAGCCACTATTCCGTCA… MSMEG_0569 family flavin-dependent oxidoreductase
2814_slr0023-sacB ATGTTTTCTCCCAGTTCTGTTAGAA… hypothetical protein
2624_slr0514-sacB ATGGTTTTGGCAGGATCAAACGCCG… hypothetical protein
2436_sll0369-sacB ATGCAGAATTTTTTTGTCATTGGTT… hypothetical protein
2246_slr0217-sacB ATGGCAGACGCCATTGAAGTTAAAA… hypothetical protein
2310_slr0053-sacB ATGGCCCCTACCTCTGTTAACAAGA… rRNA maturation RNase YbeY
2120_slr0366-codA GTGACCTTTAACGGCACGACCTATA… Ig-like domain, DUF4114 (multiple), Ca2+-stabilized adhesin repeat, S (surface)-layer proteins similar to Pseudoalteromonas tunicata Slr4, Herpes virus major outer envelope glycoprotein (BLLF1)
2184_slr0345-sacB ATGACGAATACTAAGACTACCCCCA… hypothetical protein
1994_sll0135-sacB ATGGGGATGATAATCTCTATGGCGA… S-methyl-5'-thioadenosine phosphorylase
2058_sll0301-sacB ATGTCTTCTTTCCTCGTTTTTAGCT… pentapeptide repeat-containing protein
1868_ssl2982-sacB ATGACCAAGCGTAGTAATTTGGATT… DNA-directed RNA polymerase subunit omega
1616_slr1968-sacB GTGGTCATGGCAGTGCGTTTTTTGT… CHAT domain-containing protein
1680_sll1373-sacB ATGGGCCTGCTATTTCTGAAACTAA… hypothetical protein
1554_ssr1391-sacB GTGAAAAATACTGAAAACATAATGG… glutaredoxin family protein
1176_sll1692-sacB ATGGATAGTCTTCTTTATACTGAGG… DUF29 domain-containing protein
1240_slr0870-sacB ATGCAAATTATCTACGACGAATTCC… hypothetical protein
1114_slr1880-sacB ATGAAATCCACTGGAGAAACACTGA… aminoglycoside phosphotransferase family protein
0862_sll1725-sacB ATGAACCGTGCCTCCCCCATGACCC… ABC transporter
0672_sll1925-sacB ATGGCTGAAAATGGTCTGAACTGTG… hypothetical protein
0736_ssl3451-sacB ATGGCTGATTTGTTTGTCGGTGCCC… DUF3148 domain-containing protein
0420_sll1512-sacB ATGGAAAAGGTTTTCCCTCATACTG… HxlR family transcriptional regulator
0484_sll1642-sacB ATGATGGATTTAGGGGAGTGCTTGC… hypothetical protein
0358_slr1082-sacB ATGGCAAGTTTTCTAGCCTTACTGC… hypothetical protein
0042_sll1397-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
0168_slr1417-sacB ATGAGCCAAGCCACCGCTACCCAAG… iron-sulfur cluster assembly accessory protein
0106_slr0734-sacB ATGCCAAACATTGCCGTTATTGGGG… FAD-binding oxidoreductase
3474_ssr6019-sacB GTGGTTCCCGGCACTTTATGGTCGT… no conserved domains
3538_ssr6083-sacB ATGACTATTCAAGAAGCCAAAGAGA… hypothetical protein
3412_sll5089-sacB GTGGCCCAGCCAGCAGTCGAAGCCT… metal-dependent hydrolase
3286_sll8012-sacB ATGTCCATAGTAGTCAGTACCCGTC… hypothetical protein
3224_sll7056-sacB GTGATGGTGCTTATATTGAATAATT… hypothetical protein
3034_slr0748-sacB ATGCTCATTCCCCTTACCCAAGAAA… Cyanobacterial Signature Protein
3098_slr0453-sacB GTGGGTTCTACCCTGGTAGGGAAAT… phosphoketolase family protein
2908_slr0556-sacB ATGTTTTCCCCCAGCGTTTACTCAG… YggS family pyridoxal phosphate-dependent enzyme
2972_sll0624-sacB ATGCACTTGTCAGTCCCTTTACTGC… PIN domain-containing protein
2782_sll0667-sacB ATGCTCATAGACGAAACAGGGGATA… transposase
2656_sll0585-sacB ATGCCTAGAATTGAGGATAGGTTAA… asparaginase
2404_slr0650-sacB ATGTTTGAGGACTTTGAACAGGATG… NYN domain-containing protein
2278_sll0413-codA GTGTTAACTTCGCCCATGTCTGATG… Cyanobacterial Signature Protein
2342_slr0476-sacB ATGACTGAGGAACAGCAGGGGCCCA… hypothetical protein
2026_sll1848-codA GTGGATTCCGAGATTAATCATCGTG… 1-acyl-sn-glycerol-3-phosphate acyltransferase
1900_sll0426-sacB ATGAAATACCATTATTCCCCATGGA… hypothetical protein
1964_slr0407-sacB ATGACATACTTTGCCAGCGACTTTC… class I SAM-dependent methyltransferase
1965_slr0408-sacB ATGACTATCAATTTGGCCGATCGCC… DUF4114 domain-containing protein
1775_slr1670-sacB ATGAAAACATTGAATCGTATCCATC… hypothetical protein
1839_slr0951-sacB ATGCATTTACTAATTCCAGCGGCGG… 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
1523_sll1219-sacB ATGCACTACGCCATCCCCAAAACCT… hypothetical protein
1145_slr2141-sacB ATGGAAACCGGGCCACAGGTCTGGG… methylenetetrahydrofolate reductase
1019_ssr1480-sacB ATGTCCATTTATGTCGGGAACCTTT… RNA-binding protein
1083_slr1866-sacB ATGCAAAGCTGGCGACACAGGTTCC… hypothetical protein
0831_sll1965-sacB GTGTGGTTTCCCGAACTCAGGGCAA… hypothetical protein
0579_sll0994-sacB GTGCCCTCAACCAACTTCTTTGTCC… DUF1449 family protein
0327_slr1611-sacB ATGGTTGAAGCAACAGCCCTCACCT… DUF29 domain-containing protein
0011_slr1315-sacB GTGCAACCCAAGCAGAGGGCTGTCC… Uma2 family endonuclease
0137_slr0249-sacB ATGCTGTCAAAAACTATTCATGAAG… DUF1818 family protein
0075_sll1052-sacB ATGGCCATTAACACTTTTACTATTA… sulfite exporter TauE/SafE family protein
0201_slr1110-sacB ATGGGGCCATTGTGGCCTTGTTGGA… DUF1092 family protein
3507_sll6052-sacB ATGTTGAACCGTTTTTGGGTATGGT… hypothetical protein
3571_slr0743a-sacB YlxR family protein
3445_sll5122-sacB ATGAACAGTATTGCCCTGGTGGATT… hypothetical protein
3319_slr8045-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
3129_sll1106-sacB ATGAGTGACTTAATTGTTATCGGCT… DUF1269 domain-containing protein
3193_slr7025-sacB ATGAATATAACCTTTAAGTTTAACT… hypothetical protein
3003_slr1572-sacB ATGATGGAAGAAGAATCCCTAGAAA… TIGR00266 family protein
3067_slr1658-sacB ATGAGCACTGACCAAACCAACGTCA… hypothetical protein
2877_sll0493-sacB ATGAAAACTAGTCATTTTCTCAGTT… TrkA family potassium uptake protein
2751_sll0782-sacB GTGTTAGATTCTGCCCAGCTAATTT… putative protein kinase
2815_sll0044-sacB ATGGCGCTTCATTCTTCCTCTGTTG… CheW domain-containing protein
2625_slr0516-codA ATGAATAACAAAAAACTCAGCCTAA… pentapeptide repeat-containing protein
2499_slr0919-sacB GTGAAAAGTTGGCAAATCGAACTTT… thiol-disulfide oxidoreductase DCC family protein
2563_ssl1533-sacB ATGTCTGACCACACCGCCCAGATTA… hypothetical protein
2247_ssr0349-codA ATGTTGGTGCCCATTCTCATTTTTG… hypothetical protein
2121_slr0369-sacB ATGTTGCTGAGTATCTCCAACGTTT… cation or drug efflux system protein
1869_slr1635-sacB ATGATATCAAATTTTGGACATATTG… transposase
1933_slr0287-sacB GTGACTACCCTAAACTACGTTGAAT… KH domain-containing protein
1807_slr1690-sacB GTGTCAGCCAAAATTAGAGCGGTGA… NUDIX hydrolase
1617_sll1891-sacB ATGGTTAATCATCCCTTGCCGCTTT… DUF928 domain-containing protein
1681_sll1372-sacB ATGACTTTTTCTGCTGACCGATCGC… DUF2232 domain-containing protein
1491_slr2131-sacB ATGTTCGTTGATTTTTTCATTAAGC… cation or drug efflux system protein
1555_slr0820-sacB ATGAATAAGTGGTTTAGTAAAAAGT… glucosyltransferase
1365_slr0265-sacB ATGATAATTCGAGAATTTTACAGCA… transposase
1429_sll1426-sacB GTGATGAAATCTTTACTGCGGGGAA… hypothetical protein
1303_slr1992-sacB ATGCCATTACCCACTTCCCTGACCA… glutathione peroxidase
1177_sll1691-sacB ATGGAAGAATCCGTCGGAGTCAGTT… DUF4351 domain-containing protein
1115_sll1758-sacB ATGGTTGCTTCCCCCATCCACAGTC… phosphoglucosamine mutase
0925_slr1220-sacB ATGACCATTGATAACATCCGTCTTA… photosystem reaction center subunit H
0799_sll1118-sacB ATGCTGACTTCCACAACGGATATTG… YbjQ family protein
0673_slr2006-sacB ATGGTCGCCCTAGAGGCTTGTATTT… cation:proton antiporter
0547_sll1930-sacB ATGTTAAGAGAACTAATTAAGCTCT… transposase
0295_slr0967-sacB ATGATGAAAACGATCAAAAGTCCAT… pentapeptide repeat-containing protein
0359_slr1083-sacB ATGGTTACCCTGCTGAAATGGACAG… Uma2 family endonuclease
0043_sll1396-sacB ATGAACTTTGATCTTTCAAAGCTAA… hypothetical protein
0169_sll1319-sacB ATGCGAATTTTATCTAATGTTAATC… DMT family transporter
0107_sll0700-sacB ATGTTAAGAGAACTAATTAAGCTCT… transposase
3475_ssr6020-sacB ATGTTTTTGTTTTTGATTTTAAGGA… hypothetical protein
3539_slr6084-sacB ATGTTGAGCCCTGAAATTTACGTTG… antirestriction protein
3349_sll5026-sacB ATGGCGGATACTCATAATTTTATTG… DNA phosphorothioation-associated putative methyltransferase
3413_sll5090-sacB ATGTCCATCGCTGGAAAATCCAAAG… hypothetical protein
3287_ssr8013-sacB ATGACAGCGCAAGAAAAACTCTACC… DUF2281 domain-containing protein
3099_ssl0832-sacB GTGGCGATGACTAGGAGGTGGGCAG… hypothetical protein
2909_sll0525-sacB GTGAAACTTTTGTTGGATACCCAGT… type II toxin-antitoxin system VapC family toxin
2783_sll0666-sacB GTGGATACCATGGGATTACTTCTCG… transposase
2847_sll0514-sacB ATGACTTTTTCCGTGCCGACCCAGG… MBL fold metallo-hydrolase
2721_ssl0511-sacB GTGAGACTTAAGATGGGGGGCAAAA… hypothetical protein
2531_slr0579-sacB ATGAAACGGAACTATCTACTGACGG… hypothetical protein
2279_sll0412-sacB ATGCCCTTGCCTTTGATGATGATTA… DUF445 family protein
2027_slr1939-codA ATGAATGCCCATGAAATTGCCCTGA… hypothetical protein
2092_sll0169-sacB GTGTTTATCCCCCTCGACTTTTATC… DUF4101 domain-containing protein
1902_sll0424-sacB ATGCACCAAGCCCAGGCCGAAAGGC… radical SAM protein
1966_slr0142-sacB ATGAAACTATTATCAAGTGGGCAGT… DUF1275 domain-containing protein