Plasmids and Cultures

This database contains entries for 3,572 known and predicted gene coding sequences in Synechocystis sp PCC 6803 based on the Kazusa genome sequence and nomenclature (http://genome.microbedb.jp/cyanobase/GCA_000009725.1). Plasmids for generating marked mutants and mutant strains can be searched for by gene Name/Accession (e.g. 'sll1226' or '1513_sll1226-sacB'),  gene homology (e.g. 'hydrogenase large subunit'), Gene ID (e.g. hoxH), or by a portion of the gene coding sequence Sequence (CDS).

Please note, the library is still being completed. Plasmids and/or marked mutants may not be available. Users can also search for available materials by Plasmids made or Mutant made.

Plasmids, mutants and the unmarking spacer plasmid pUC19K-UL are currently available on request. Regardless of the segregation status of the mutant, open reception of a cyanobacterial mutant strain we recommend 1-2 cycles of restreaking on a selection plate containing kanamycin (100 μg/ml).

Name CDS Gene Homology Gene ID Sort ascending
0025_sll1405-sacB ATGACCAACCGGAGGAAAAAGAGTA… biopolymer transporter ExbD
3423_ssl5100-sacB ATGCAGTCCTTTAATCGACGATCGC… hypothetical protein
3233_sll7065-sacB ATGGCTAGAAAAGTTACTACACGCT… hypothetical protein
3297_slr8023-sacB ATGAAAGCAAGCTTTGGCACTGAGA… carboxylesterase family protein
3107_slr0460-sacB GTGAGAAGCTTTGAATACTTTAAAT… transposase
3171_sll7003-sacB ATGACAGAGCCAGTCAAATATTTGA… plasmid stability protein
2981_slr0667-sacB ATGTCTAAAAAACAATATCTAAAGC… hypothetical protein
3045_ssr1256-sacB ATGGTCATTTCCTCACCCCTCCACC… DUF4327 family protein
2919_slr1420-sacB ATGGAGAAGGTTGACCAAGCAAAAT… type II toxin-antitoxin system HicB family antitoxin
2667_sll0103-sacB ATGCGTATCGACCTTTCCTTGCTTT… VWA domain-containing protein
2479_slr0897-sacB ATGAATAGCATCCTTTCCCCCATTA… endo-14-beta-glucanase
2289_slr0438-codA ATGAGCGAAGATTCCCCCAAACCAG… DUF3082 domain-containing protein
2353_slr0491-sacB ATGGCGAGCCCTAATTTATTGCCCG… gamma-glutamylcyclotransferase
2163_slr0779-codA ATGAGCACCCTCCTTGGAATCCTCG… DUF4126 domain-containing protein
2227_sll0012-sacB ATGATAATTCGAGAATTTTACAGCA… transposase
2037_slr1946-sacB GTGAACAAAAAAATCAAGCTCTGGG… matrixin family metalloprotease
2101_ssl0296-sacB GTGCTTAATGCCATTTTTTACATGC… transposase
1975_slr0151-sacB ATGATGGAAAATCAAGTTAATGAGC… tetratricopeptide repeat protein
1849_slr0960-sacB ATGGACTGGCTTTTCTATTTGTTCT… hypothetical protein
1659_sll1387-sacB ATGCCCAATCCTCGACGCATTGTCT… serine/threonine protein phosphatase
1723_slr1529-sacB ATGACCGATCGCCTTTCCTATTTGC… nitrogen assimilation regulatory protein
1597_sll1242-sacB ATGCGCGCCCTATTAATCTATCCGT… B12-binding domain-containing radical SAM protein
1407_ssl3769-sacB ATGTTGGTACTTTCCGTCCTATCTT… hypothetical protein
1471_slr2112-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
1281_sll1960-sacB GTGCAATTAAGCTTTCAAGAACGTT… hypothetical protein
1345_slr1726-sacB ATGGCAGAAAAACTATCTTCCTCAC… DUF4230 domain-containing protein
1219_slr0856-sacB ATGGCTTACAGTTTAGATTTGAGGC… transposase
1093_sll1771-sacB GTGACAGAAGTGAATTTATCAGTTG… serine/threonine-protein phosphatase
0463_slr1056-sacB ATGGAATTAAAAAGTGTTAAATTAA… ATP-dependent endonuclease
0337_slr1063-sacB ATGTCCAAAAATGACAAGCCATTAG… glycosyltransferase
0147_slr0254-sacB ATGGCCCTGTTTAACCATTATCAGG… RDD family protein
3518_slr6063-sacB ATGTCCATCGCTGGAAAATCCAAAG… hypothetical protein
3392_sll5069-sacB ATGACTCAATTCTACAAGCTAACAA… hypothetical protein
0058_slr1119-sacB ATGCAAACGATTTCCCCTGCGTCGA… hypothetical protein
3456_slr6001-sacB PAS domain S-box protein
0122_ssl0426-sacB ATGATCTTTACAGGAAGCTTGAATG… transposase
3266_slr7098-sacB ATGTACGACGCGCTATTGCCTATAG… hypothetical protein
3330_ssl5007-sacB ATGGACTTTAACCCCAATGAGTGGC… hypothetical protein
3204_ssr7036-sacB ATGGAAACAGGGCACTCCATCGCCC… hypothetical protein
3014_sll1482-sacB ATGAAAATTCCCCTTGCCTGGCACC… FtsX-like permease family protein
3078_sll1544-sacB ATGGAATTTGACCCCGATTCCCTCG… response regulator like protein
2888_ssr1562-codA GTGGCTTTTATGAGTACTGCAACTT… DUF4327 family protein
2952_slr1462-sacB ATGCCCCTGCCCCGTTTACTAACCA… DUF697 domain-containing protein
2762_slr0699-sacB ATGTTCAAAAATGGTTATTTACTAA… hypothetical protein
2700_slr0302-sacB ATGAGCGATCGCCACAAAACCAAAG… diguanylate cyclase
2384_slr0634-sacB ATGGCAACTACCGCTGATGAAGTTT… DUF3782 domain-containing protein
2258_sll0200-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
2132_slr0380-sacB GTGAGTAGATTTTGCCCTCGGTTCC… CHAT domain-containing protein
2196_slr0352-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
2070_slr0333-codA ATGACTTTGGACAAGCTTGGGTCGG… peptide-binding protein
1944_sll0364-sacB ATGTTACCGCCGACAATGGAAAGCC… DUF2358 domain-containing protein
1754_slr1163-sacB ATGACTTTTTATTATTTGCTTTTTG… porin
1818_slr0937-sacB ATGAATAACTCTGATTTCCTGTCTT… hypothetical protein
1628_slr1974-sacB ATGTCCCTTCCCATCGTCGCCATTA… ribosome biogenesis GTPase Der
1502_ssr2201-sacB ATGCACTCATTGTCATCACTGGAAT… hypothetical protein
1566_sll1263-sacB ATGACCGCCCGTCTTGCCCGTCCCT… transporter
1250_sll1159-sacB GTGAATTTACAAATTGAATTATACA… AhpC/TSA family protein
1314_sll1902-sacB ATGATTACTCCCCTTTCTTGGCAAG… glutathione S-transferase family protein
1124_slr1885-sacB ATGGTTGAGTTAGACCGGAGTCGGG… HD domain-containing protein
0998_sll1274-sacB ATGCAAAATCTCGGTTTACAGTATC… Cyanobacterial Signature Protein
1062_sll1307-sacB ATGCTCAAATTTACTTTTACTCCGC… heme-binding protein
0936_slr1229-sacB ATGATCAATTGGACGATATTAAAGC… SulP family inorganic anion transporter
0810_slr1207-sacB GTGCCCATGGCCATGCCCCTTGTCC… HlyD family efflux transporter periplasmic adaptor subunit
0558_slr1914-sacB GTGATGGTAGGTTCGGGGCAATGTG… hypothetical protein
0496_sll1635-sacB ATGGATGTTCGTTTCATTTCCCTCA… FAD-dependent thymidylate synthase
0306_sll0931-sacB ATGGCTTCCACCAAAAAGATTTTAC… tetratricopeptide repeat protein
0244_sll1663-sacB ATGAGTGATTCCCTCACCGCCATCA… HEAT repeat domain-containing protein
3486_slr6031-sacB ATGAAGCATTATAAAACTTCACACG… hypothetical protein
3550_slr6095-sacB ATGTTATTCCTTAAGCGAGCTTCAG… methyltransferase
3360_slr5037-sacB ATGTATTACTTTAGTAAAAAATTGC… DUF302 domain-containing protein
3424_slr5101-sacB ATGCGAAGACGCAGACCTACCAGGC… hypothetical protein
3234_sll7066-sacB ATGCGAGGAATTGAGATAACCATAA… hypothetical protein
3298_ssl8024-sacB GTGCAACATCATATTTGCTATTGTT… No conserved domains
3108_sll0431-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
3172_ssl7004-sacB ATGGCTAATTTAATTGTTCGCAATA… DNA-binding protein
2982_slr0668-sacB ATGCTTAAAAAAGTATCGTTTTCTA… hypothetical protein
3046_slr0755-sacB ATGTCAATTCATAGTGGTATTCCTT… NYN domain-containing protein
2856_sll0509-sacB ATGGGTAATGTTGTTGCCCGGTGCC… Ap-4-A phosphorylase II
2920_slr1421-sacB ATGAGCCACACTTTTCAGCAGATTT… DUF4258 domain-containing protein
2730_slr0793-sacB GTGATGAAAACAATTCAATTAGCAA… hypothetical protein
2668_sll0102-sacB ATGACCCATTCCCCTGAATCCAACC… hypothetical protein
2290_sll0403-codA ATGTCATCTTTTAATCAGATAACTA… hypothetical protein
1786_ssr2802-sacB ATGGCTTCTTCGGTTGGCGCGGACG… ABC transporter
1850_sll1541-sacB ATGGTCACTTCCCCCCCAACCAGTT… carotenoid oxygenase family protein
1660_sll1386-sacB ATGGTCAATTTTCGTCGCCGGGCTC… ComEA family DNA-binding protein
1534_slr0810-sacB ATGCAATTAATCTCTGGCTTTGTGG… DUF4351 domain-containing protein
1598_slr1956-sacB ATGGTTAACCATGGTTATCCCCTAG… tetratricopeptide repeat protein
1472_slr2113-sacB ATGTTAAGAGAACTAATTAAGCTCT… transposase
1220_slr0857-sacB ATGTTAAGAGAACTAATCAAGCTCT… transposase
1030_sll0871-sacB ATGAACACTTTTTTGGCATCCCCTA… hypothetical protein
1094_sll1770-sacB GTGTCTGCCCTATCCACTAAGCTTG… ABC1-like
0904_ssr2611-sacB GTGACCCCTAAAAGTGGTATTCTTC… hypothetical protein
0968_ssr2406-sacB ATGAATGAACCAAAACAGACCGAAA… hypothetical protein
0716_sll1081-sacB ATGACTATTGCCCAGGATAAATTAT… integral membrane components of other binding-protein-dependent transport system
0526_slr2042-sacB ATGTTGCCCACTGCCATTGTCCTCA… zinc-dependent peptidase
0590_slr1032-sacB ATGCCCACCCCACAAGCACTGTATC… hypothetical protein
0400_ssr1155-sacB ATGAGTCAAACTAACTACTATCAGA… DUF2949 domain-containing protein
0464_sll1006-sacB ATGGAGGAAAATTTGGGCATGGACA… hypothetical protein
0274_sll1191-sacB ATGCTCGATTTTTTCTGCAGTGGCA… LapA family protein
0465_sll1005-sacB ATGGATGCCACTGCCCCCATTCTCC… regulatory protein for beta-lactamase
0275_ssr2153-sacB ATGAAATTACAGCATCCCAAACCCC… hypothetical protein
0339_slr1065-sacB ATGAATCCAATAGTAAAAGCTCCCA… glycosyltransferase
3519_slr6064-sacB ATGGATGGGCTACTCCATTCCCTTT… ATP-binding protein
3393_ssl5070-sacB GTGGTTTTACATGGGAAAATATATT… no conserved domains
0059_sll1062-sacB ATGTCTAAATTTAGCAAATTACTAG… hypothetical protein
3457_ssr6002-sacB ATGGACTTTAACCCCAATGAGTGGC… hypothetical protein
3267_slr7099-sacB ATGACTGATTTCAAAGCATTGATTG… hypothetical protein
3331_ssl5008-sacB GTGGATGTCCGCCCATGGCACCAGA… no conserved domains
3205_slr7037-sacB ATGAAAGTTAGACCCCAGCACTGGC… DUF3854 domain-containing protein
3015_sll1481-sacB ATGGGTGAATCCACTAGGACTGGAC… biotin/lipoyl-binding protein
3079_sll1543-sacB GTGAAACTTTATCTAGACACCAGCG… PIN domain-containing protein
2763_slr0700-sacB ATGACGGTACTGACTAATTCTTCTT… APC family permease
2701_slr0303-sacB ATGACCTATCTGCAAACCACCGCCG… methyltransferase domain-containing protein
2385_slr0635-sacB ATGGCCCTTCCCTTTGACCTGGAGC… folate-binding protein
2449_sll0185-sacB ATGGCTAAAGAAGACCGACCCTCCC… DUF4912 domain-containing protein
2133_slr0381-codA ATGTTCTTGCTACACACCATGATTC… lactoylglutathione lyase
2197_sll0315-sacB ATGATATCAAATTTTGGACATATTG… transposase
2071_slr0334-sacB ATGAAAAAATTCTCTAGAACTGTTT… hypothetical protein
1755_ssl2148-sacB ATGTTTGCTCTACCCATCCTGGCGG… hypothetical protein
1819_slr0938-sacB ATGAGTAATCTTTCGATCGCCGATG… Mur ligase family protein
1629_sll1884-sacB GTGCCCATGACCCGTTCCATCCCTA… hypothetical protein
1693_slr1270-sacB ATGAAATCAATCCATCCGCTCAAAT… TolC family protein
1503_slr1327-sacB ATGAACAATGAAGTTATCCGGGTTG… putative toxin-antitoxin system toxin component%2C PIN family
1567_sll1262-sacB ATGTTGCCATTGCCATTAATTGCTA… NAD(P)H-quinone oxidoreductase subunit N
1251_sll1158-sacB ATGATATCTCAATCAATAATTCCCA… hypothetical protein
1315_ssr3402-sacB ATGAAGCAAATTATTCCCGCACTGA… hypothetical protein
1189_sll1628-sacB ATGCAGAAATTTTTCCAGCGTATTT… tetratricopeptide repeat protein
1063_sll1306-sacB ATGCAAAGAAGAGATCTGTTTAAAT… hypothetical protein
0937_slr1230-sacB GTGAAAAATATTTTGCTTTGCACTG… universal stress protein
0811_ssr2016-sacB ATGTTCGCCCCCATCGTTATCTTGG… hypothetical protein
0433_ssr2699-sacB GTGAAAAAGGCTGGCGCTGGACAAG… transposase
0307_sll0930-sacB GTGGCCGACTATGCCTTCTTCGTTT… hypothetical protein
0181_slr1100-sacB ATGGCAAGACGTAAAAAAACTTTTC… hypothetical protein
3487_ssr6032-sacB ATGAAAAGGAGTTTTAGCCATGGAA… DNA cytosine methyltransferase
3551_slr6096-sacB ATGCAATATTTTGATTTTTTGCCGG… Chromosome segregation ATPase
3361_slr5038-sacB ATGAAAGAAATACATAGCTTAGAAA… chromate transporter
0027_slr1484-sacB ATGTCAATCTCTAATTTCTGCCTGA… TonB family protein
3425_slr5102-sacB ATGTCTAGCACCCTGGCAATCACAG… nucleotidyl transferase AbiEii/AbiGii toxin family protein
0091_slr0722-sacB ATGTTGGCCAAAGCGTTTGCGGGGT… 16S rRNA (uracil(1498)-N(3))-methyltransferase
3235_sll7067-sacB ATGTTTCTAGTTCTAATTGAGACTT… hypothetical protein
3299_sll8025-sacB ATGAGATTAAAGATTAGTAAGAGAA… hypothetical protein
3109_ssr0817-sacB ATGACTATAAAGGTAGTATTAGCAT… transposase
3173_slr7005-sacB ATGAAAATTAACCGCCAGGGGCAGG… site-specific integrase
3047_ssr1258-sacB ATGAACAAGCAAGAATTTTATGTTC… type II toxin-antitoxin system HicB family antitoxin
2857_sll0508-sacB ATGCCCACATCTATGTCGGAATGGA… hypothetical protein
2921_sll1344-sacB GTGGACAGATGCAAATTCTCGAATG… hypothetical protein
2731_slr0794-sacB ATGTTAAATACGCTTCTCAATCAAA… CusA/CzcA family heavy metal efflux RND transporter
2605_sll0487-sacB ATGTTGTCCAACTCCGACCAGCACC… class I SAM-dependent methyltransferase
2669_slr0105-sacB ATGTCTGATTCGTCTCTGAAACAAG… ATPase
2543_slr0829-codA GTGCTGCAAGTTTTGCTGGTTATGG… PAS domain S-box protein
2417_sll0382-sacB ATGAAATTTAACCTAGCTCTATTTT… hypothetical protein
2291_slr0439-sacB ATGAGTTATCTGAACCTAGACACAT… WD40 repeat domain-containing protein, IS630 family transposase
2039_slr1949-sacB ATGACCTCCTATTCCTCTGCAACGG… Cyanobacterial Signature Protein (thylakoid membrane protein)
2103_ssl0294-codA ATGTTTCTTGAAGAACTTAAGCCAG… hypothetical protein
1913_sll0274-sacB ATGTTAATGAATTTTTTAGTAATTT… pentapeptide repeat-containing protein
1977_sll0149-sacB ATGGGTATGCCATGGACCTTGGTGC… hypothetical protein
1787_ssr2803-sacB ATGGACAACATTAAAATCGATCAGC… DUF29 domain-containing protein
1661_slr1467-sacB ATGGTATGGAGGCATTTCACCCCCT… precorrin isomerase
1599_slr1957-sacB ATGAGACATTTTTGCGACGCTTGGA… hypothetical protein
1409_sll1979-sacB ATGACTGAGTCCGTAATCTCCCCAG… Cyanobacterial Signature Protein
1347_slr1727-sacB GTGGATACAGCGGTCAACGAATCCC… eukaryotic Na+/H+ exchanger
1095_sll1769-sacB ATGCAAAACCAAGTCCTCCAGGCCT… thylakoid lumen protein
0717_sll1080-sacB ATGTTATTAACAACTAGCGGAGAAA… aliphatic sulfonate ABC transporter substrate-binding protein
0527_sll1940-sacB ATGTTTAGATTATTCAATTCGGGGA… peptidase
0591_slr1033-sacB ATGACAATACTTTTTACCAAAATTC… hypothetical protein
0401_slr0689-sacB ATGGCGACGATCGCCGAGATTAATG… hypothetical protein
0466_sll1004-sacB ATGCTGATCATTGCCATACTCTGCT… glycosyltransferase
0276_slr1301-sacB GTGCTCTATCTGGCTGAAATTAAGA… hypothetical protein
0340_slr1066-sacB ATGGATAAAAAGCAATTAAAAATCT… glycosyltransferase family 1 protein
0214_slr1780-sacB GTGGAAAGTTGGGCATTGACGACCC… Ycf54-like protein
3520_slr6065-sacB ATGCTCACCATTACCCATCTATTAG… metal-dependent hydrolase
3394_slr5071-sacB ATGGATGACAGGGATCTAGTAAAAA… XRE family transcriptional regulator
0060_sll1061-sacB ATGGATCGAATAGAACAAAAAGTTA… hypothetical protein
3458_ssr6003-sacB ATGTCCATCGCTGGAAAGTCCAAAG… no conserved domains
0124_slr0240-sacB ATGAGCTGGATTCCCCCCTACCGTC… hypothetical protein
3268_slr7100-sacB ATGACCATCAACACCGATGCCATTC… hypothetical protein
3332_ssr5009-sacB GTGACAACTGTTACCGATGCAGACC… hypothetical protein
3142_slr0591-sacB ATGGTTGTCAGCACCGTTAATCCCA… ribonucleotide-diphosphate reductase subunit beta
3206_ssl7038-sacB ATGGAAACCCTTAAAACTATCCCTT… putative addiction module antidote protein
3080_slr1667-sacB ATGTTCACTAAATTCAATCAAGTTC… hypothetical protein
2890_ssl1707-sacB ATGAGCCTGGATAATGAATCAATCT… sulfurtransferase TusA family protein
2954_slr1464-sacB ATGAACACAACTTTTCCGGCGGTGT… radical SAM protein
2828_sll0034-sacB ATGGGTAAAAAACCAAAATCTTCCT… D-alanyl-D-alanine carboxypeptidase family protein
2702_slr0304-sacB ATGGTTCAACAATTAGAACGTAGTC… radical SAM/Cys-rich domain protein
2512_sll0553-sacB GTGGGGGCAAAAGTTATTGCAACGG… alpha/beta hydrolase
2386_sll0611-sacB ATGAATCCTGAATTTCATCCCCTCC… hypothetical protein
2260_slr0226-sacB ATGAATCCTTGCAAATTTTTTCGTT… hypothetical protein
2198_slr0353-sacB ATGAAAATAGATTATAAATTAACTC… hypothetical protein
2072_ssr0536-sacB ATGAAAAACTTCCCCGCAATGATTG… hypothetical protein
1882_sll1524-sacB GTGTCAATCAAGTTAGTAGTATTGG… Cof-type HAD-IIB family hydrolase
1504_sll1233-sacB ATGGCAACCTATCGCATTGAACATC… transglutaminase family protein
1378_slr0271-codA ATGCGAATCAACCATAAGCCTCTAT… hypothetical protein
1442_slr1512-sacB ATGGATTTTTTGTCCAATTTCTTGA… sodium-dependent bicarbonate transport family permease
1252_slr1245-sacB ATGGATCGTCTTGCTTGTATGCAGA… transcriptional regulator
1316_slr2004-sacB ATGCACCAAATATCAATGAAGCAAA… hypothetical protein
1126_sll1755-sacB GTGAAGCAATGGAGGAAACTCCCTA… hypothetical protein
1064_sll1305-sacB ATGAATAGCCCCTTTATTCCTATCG… alpha/beta hydrolase
0938_sll1135-sacB ATGAAGCAAATATCCGTGGTTATTG… NAD(P)/FAD-dependent oxidoreductase
0812_slr1208-sacB ATGAAGAGTTTATGGGATGACCAGG… short-chain alcohol dehydrogenase family
0622_sll1293-sacB ATGGTAGAGGACTATTTTTGGATTG… hypothetical protein