Plasmids and Cultures

This database contains entries for 3,572 known and predicted gene coding sequences in Synechocystis sp PCC 6803 based on the Kazusa genome sequence and nomenclature (http://genome.microbedb.jp/cyanobase/GCA_000009725.1). Plasmids for generating marked mutants and mutant strains can be searched for by gene Name/Accession (e.g. 'sll1226' or '1513_sll1226-sacB'),  gene homology (e.g. 'hydrogenase large subunit'), Gene ID (e.g. hoxH), or by a portion of the gene coding sequence Sequence (CDS).

Please note, the library is still being completed. Plasmids and/or marked mutants may not be available. Users can also search for available materials by Plasmids made or Mutant made.

Plasmids, mutants and the unmarking spacer plasmid pUC19K-UL are currently available on request. Regardless of the segregation status of the mutant, open reception of a cyanobacterial mutant strain we recommend 1-2 cycles of restreaking on a selection plate containing kanamycin (100 μg/ml).

Name CDS Gene Homology Sort ascending Gene ID
3167_slr0610-sacB GTGGGCAGTGTGGTGAATCTAGGGG… ABC transporter permease
0728_slr1149-sacB ATGACCCCGTCCCCTGCTGCTCCCC… ABC transporter ATP-binding protein
1833_sll0912-sacB ATGGCTCTCATCACTGTTCAATCCC… ABC transporter ATP-binding protein
2602_sll0489-sacB ATGATTGAGGTTGAACATCTCAGCA… ABC transporter ATP-binding protein
2644_slr0615-sacB ATGGCCGCCCCCAGCGTCAAGCAGT… ABC transporter ATP-binding protein
1384_sll0240-sacB ATGATCAGAGTTGAACAGGTGAGCA… ABC transporter ATP-binding protein
0318_slr0977-sacB ATGAAAACTTCCCCCCCAGAACTGA… ABC transporter
0029_slr1488-sacB ATGCTCCTTTCGCCCCAGTCTAATC… ABC transporter
2870_slr0544-sacB ATGCTTGATTCAAACTCGTTAGTGA… ABC transporter
2273_sll0415-sacB ATGCGTTTTCGATGTTACTTAATAT… ABC transporter
0322_slr0982-sacB ATGTCTGATACAGTCATTCGAGTGG… ABC transporter rfbB
0669_sll1927-sacB GTGGCGAATCTTAGGACACATTTTG… ABC transporter
0035_slr1494-sacB ATGCCACCTATCTATCAACTGCTTT… ABC transporter
0862_sll1725-sacB ATGAACCGTGCCTCCCCCATGACCC… ABC transporter
2755_sll0778-sacB ATGGTCATGAATCAAAATAATAGAC… ABC transporter
0139_slr0251-sacB GTGACAGGCTTTTTAGCGAGAACGG… ABC transporter lptB
0995_sll1276-sacB GTGGGGCGCATGGCCAAATATATCG… ABC transporter
0171_sll1041-sacB ATGAGTGAACCAGTCCAGCCCATTA… ABC transporter
2414_sll0385-sacB ATGTTCAACGGGTTTAGGTTTAACG… ABC transporter
2162_sll0759-codA ATGGGAAAGAGTTACCTCATGGGCG… ABC transporter
1786_ssr2802-sacB ATGGCTTCTTCGGTTGGCGCGGACG… ABC transporter
0050_slr1113-sacB GTGTCCCCCATGGAATTAACCCCTG… ABC transporter
0781_slr1901-sacB GTGGTGGAAAATTTGAGCAAGGTTT… ABC transporter
2200_slr0354-sacB ATGCTGTGTTTAAACGACGTTTGCT… ABC transporter
0688_slr2019-sacB GTGACTAAACCCATTGCCCCCCTCC… ABC transporter
2608_sll0484-sacB ATGGCAATGCTTCTTTCCTCCCCCT… ABC transporter
1635_sll1878-sacB ATGACAGTCGCCCAATTTTCTCCCG… ABC transporter futC
0472_sll1001-sacB ATGACGGAACCCCTTATTCAACTCC… ABC transporter
2456_sll0182-sacB ATGACCCAAGCCCAAGCCAAGCGTT… ABC transporter
1039_slr0889-sacB ATGTTTGCCTTACCTCAAGCCGGCG… AarF/ABC1/UbiB kinase family protein
2678_sll0095-sacB ATGATGCTCATTTCGCAACCGATGG… AarF/ABC1/UbiB kinase family protein
0569_slr1919-sacB GTGCCTAACCCCAAACCCCTGCCAC… AarF/ABC1/UbiB kinase family protein
2346_slr0480-codA ATGACTTTTAGTGAAGAATTTGAAT… AAA family ATPase ycf46
0404_slr0692-sacB ATGTCGGAACTTAGCCTGGCCCATC… AAA family ATPase ycf45
0115_slr0741-sacB ATGGCCGCCAGTTTATCCCAACAGA… a negative regulator of pho regulon phoU
2497_slr0917-sacB GTGAAAACTGTAGTTGGTAAGCATA… 7-keto-8-aminopelargonic acid synthetase bioF
2845_slr0527-sacB GTGGAGAAGTGCGACAAAGACAATT… 7-cyano-7-deazaguanine synthase exsB/queC
1134_sll2011-sacB ATGAGTATGGGCCCCATTTCTGAAT… 7-carboxy-7-deazaguanine synthase QueE queE
2130_slr0378-sacB ATGCTGGTGCAAATACGGGGTAAAT… 7-beta-(4-carbaxybutanamido)cephalosporanic acid acylase
0248_sll1659-sacB ATGGTGCTATCTACCGTCAACCTTA… 7%2C8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofH cofH
0639_sll1285-sacB GTGTTGTCTATCACTTACAGTCCCG… 7%2C8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG cofG
0173_slr1093-sacB ATGGCTCCTGTCTCCCCCACAGATT… 7 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase folK
1716_slr1288-sacB GTGTCTTCATCCAATAGTCCTTCCG… 6S RNA ssaA
2272_sll0416-sacB ATGTCTAAACTTATTTCCTTTAAGG… 60kD chaperonin 2 groEL-2
0833_slr2076-sacB ATGGCTAAATCCATCATTTACAATG… 60kD chaperonin 1 groEL
2137_sll0329-sacB GTGCAATTTAACGTAGCTATTATGA… 6-phosphogluconate dehydrogenase gnd
2582_slr0078-sacB ATGTGGATTATTTATAAGGAGTTTT… 6-carboxytetrahydropterin synthase QueD queD
2556_sll0828-sacB ATGCGGAGACAGGCTGATAGGGAGT… 6-aminohexanoate-cyclic-dimer hydrolase nylA
1595_sll1244-sacB ATGGAGGTTTGTGAATTGCTCCACA… 50S ribosomal protein L9 rpl9
0757_sll1810-sacB ATGTCCCGTATCGGAAAACGCCCCA… 50S ribosomal protein L6 rpl6
0759_sll1808-sacB GTGCTCGAGTTCCCTTCGTCCATCT… 50S ribosomal protein L5 rpl5
0770_sll1800-sacB ATGGTTGATTGTATTGTAAAAAACT… 50S ribosomal protein L4 rpl4
0750_sml0006-sacB ATGAAAGTTAGAGCTTCCGTTAAGA… 50S ribosomal protein L36 rpl36
2154_ssl1426-sacB ATGCCCAAACTTAAAACTCGTAAAG… 50S ribosomal protein L35 rpl35
1663_smr0011-sacB ATGACTCAACGAACCCTCGGCGGAA… 50S ribosomal protein L34 rpl34
2540_ssr1398-sacB ATGGCTAAAAAAGGTAAGGGGGCAC… 50S ribosomal protein L33 rpl33
0456_ssr1736-sacB ATGGCAGTTCCCAAGAAGAAAACCT… 50S ribosomal protein L32 rps32
0742_ssl3445-sacB ATGCCCAAAGCTGATATTCACCCCA… 50S ribosomal protein L31 rpl31
0771_sll1799-sacB GTGTCTATCGGTATTTTAGGAACAA… 50S ribosomal protein L3 rpl3
0763_ssl3436-sacB ATGGCTCTTCCCAACATTGCAGACG… 50S ribosomal protein L29 rpl29
0288_ssr1604-sacB ATGGCCCGTCGCTGTCAACTGACCG… 50S ribosomal protein L28 rpl28
1783_ssr2799-sacB ATGGCCCATAAGAAAGGAACGGGGA… 50S ribosomal protein L27 rpl27
0760_sll1807-sacB ATGACTAAAACCAAACCAGCCCCCC… 50S ribosomal protein L24 rpl24
0769_sll1801-sacB GTGAGTAAGGTAATTGATCAGCGTC… 50S ribosomal protein L23 rpl23
0766_sll1803-sacB ATGACAAAACTTGATACGACGGCCG… 50S ribosomal protein L22 rpl22
1782_slr1678-sacB ATGAGTTACGCCATTATTGAAATTG… 50S ribosomal protein L21 rpl21
2153_sll0767-sacB ATGACCAGAGTTAAACGGGGCAACG… 50S ribosomal protein L20 rpl20
0768_sll1802-sacB ATGGGTATTCGTAATTATCGGCCAA… 50S ribosomal protein L2 rpl2
0844_sll1740-sacB ATGACCATGAACGCCCAAGCCATAA… 50S ribosomal protein L19 rpl19
0756_sll1811-sacB ATGAAAAGCACTCGTAAATCTGCTA… 50S ribosomal protein L18 rpl18
0746_sll1819-sacB ATGCGACACAGATGTCGAGTGCCTC… 50S ribosomal protein L17 rpl17
0764_sll1805-sacB ATGTTAAGTCCTAGAAGAACAAAAT… 50S ribosomal protein L16 rpl16
0754_sll1813-sacB ATGAATTTGAGCGAACTCTCTCCCA… 50S ribosomal protein L15 rpl15
0761_sll1806-sacB GTGATTCAACAACAAACCTATCTCA… 50S ribosomal protein L14 rpl14
0744_sll1821-sacB ATGAACAAAACTGTATTACCAACCA… 50S ribosomal protein L13 rpl13
1387_ssl0438-sacB ATGGGCATGACTATAATTTTGATAT… 50S ribosomal protein L12 honologue
0838_sll1746-sacB ATGTCCGCTGCAACCGATCAAATTT… 50S ribosomal protein L12 rpl12
0841_sll1743-sacB ATGGCCAAGAAAGTCGTCGCTCTGA… 50S ribosomal protein L11 rpl11
0839_sll1745-sacB ATGGGAAGAACGAGAGAAAATAAAG… 50S ribosomal protein L10 rpl10
0840_sll1744-sacB ATGACTAAAAAGCTTTCAAAACGCA… 50S ribosomal protein L1 rpl1
1960_sll0356-sacB ATGGCCATGGAGGTAAAAATTTGCG… 5-phosphoribosyl anthranilate isomerase trpF
2760_slr0697-sacB ATGACCAAATTTTTTGTGGACCGGG… 5-oxoprolinase
1104_slr1877-sacB ATGGTCCAACGTTACGTTCGTATCC… 5-oxo-125-tricarboxilic-3-penten acid decarboxilase/isomer hpcE
2470_slr0212-sacB ATGAAAAGTGCTTTTTTAGACCGTA… 5-methyltetrahydrofolate--homocysteine methyltransferase; type II toxin-antitoxin system HicA family toxin metH
0481_sll1643-sacB GTGGATAAAGCCCAATTACGAGCCC… 5-formyltetrahydrofolate cyclo-ligase
0902_sll1459-sacB ATGAATTTTTTGCTCACCAATGACG… 5'/3'-nucleotidase SurE surE
3118_sll1108-sacB ATGACCCCATCCCCGGTCCTCAATC… 5'/3'-nucleotidase surE
2830_sll0031-sacB GTGACAAGTAGCGAAATTTCACTTA… 4Fe-4S ferredoxin
1306_sll1906-sacB ATGACCGTTAGCGAATCGATGGCCG… 44.5 kD bacteriochlorophyll synthase subunit
1761_sll1091-sacB ATGGTGGATGAGTTTGATCTGCCCC… 43 kD bacteriochlorophyll synthase subunit chlP
2793_sll0660-sacB ATGGATTGTATGAGTTTGCCCCGTT… 4-hydroxythreonine-4-phosphate dehydrogenase, pyridoxal phosphate biosynthetic protein; PdxA pdxA
2595_slr0090-sacB ATGGAATTCGACTATCTTCATTTAT… 4-hydroxyphenylpyruvic acid dioxgenase hppD
2881_slr0926-sacB ATGGTTGCCCAAACCCCATCTTCCC… 4-hydroxybenzoate-octaprenyl transferase ubiA
2901_slr0550-sacB ATGGCTGATTTTGTAAGCACTTCCC… 4-hydroxy-tetrahydrodipicolinate synthase dapA
2191_slr0348-sacB ATGGATACCAAAGCTTTTAAACGGT… 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
0222_sll1676-sacB ATGTTAGATAAACGCTGTAGCGGTA… 4-alpha-glucanotransferase malQ
0087_sll0711-sacB ATGCATTCCTACACCCTCCATGCCC… 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase
2169_sll0754-sacB ATGGCTACCAGTCGTCGAGTTTCCC… 30S ribosome-binding factor RbfA rbfA
0743_sll1822-sacB ATGCAAGCTAACGATTCCAGCAACA… 30S ribosomal protein S9 rps9
0758_sll1809-sacB ATGGCTTCAACAGACACAATTTCCG… 30S ribosomal protein S8 rps8
1745_sll1097-sacB ATGTCTCGTCGTGGCAATGTCAAAA… 30S ribosomal protein S7 rps7
1103_sll1767-sacB GTGCTTGTGAATAGTTACGAACTGA… 30S ribosomal protein S6 rps6
0755_sll1812-sacB ATGGCAAAGCGTCGTAAAACCAGCC… 30S ribosomal protein S5 rps5
2336_slr0469-sacB ATGTCTCGTTATAGAGGACCTCGTC… 30S ribosomal protein S4 rps4
0765_sll1804-sacB ATGGGACAAAAAATACATCCAGTTG… 30S ribosomal protein S3 rps3
2201_ssl0601-sacB ATGACTCAAGTTGTTGTAGGTCAAA… 30S ribosomal protein S21 rps21
0789_ssl2233-sacB GTGGCTAATATCAAGTCCGCCCTGA… 30S ribosomal protein S20 rps20
1569_sll1260-sacB ATGCCCGTAGTTTCTCTCGCAGATT… 30S ribosomal protein S2 rps2
0767_ssl3432-sacB ATGGGTCGTTCACTGAAAAAAGGTC… 30S ribosomal protein S19 rps19
2541_ssr1399-sacB ATGAACTACTACCGTAAACGCCTTT… 30S ribosomal protein S18 rps18
0762_ssl3437-sacB ATGGCGATTAAAGAACGTGTGGGCA… 30S ribosomal protein S17 rps17
1932_ssr0482-sacB ATGATTAAACTCCGTCTAAAACGCT… 30S ribosomal protein S16 rps16
0304_ssl1784-sacB ATGTCCTTAACCCAAATCCGTAAAC… 30S ribosomal protein S15 rps15
2376_slr0628-sacB ATGGCAAAAAAATCCATGATCGAGC… 30S ribosomal protein S14 rps14
0749_sll1816-sacB GTGGCACGCATAGCTGGTGTTGACC… 30S ribosomal protein S13 rps13
2587_slr0082-sacB ATGGGCCAAACGCCAACGATCGCCA… 30S ribosomal protein S12 methylthiotransferase RimO rimO
1746_sll1096-sacB ATGCCAACTATCCAGCAGCTAATTC… 30S ribosomal protein S12 rps12
0748_sll1817-sacB ATGGCGCGTCCTACCAGAAAAACTG… 30S ribosomal protein S11 rps11
1742_sll1101-sacB ATGGCAACATTGCAACAACAAAAAA… 30S ribosomal protein S10 rps10
1650_slr1984-sacB ATGCCTTCTTCCTCCAACAGTGCAG… 30S ribosomal protein S1 rps1
0992_slr1356-sacB ATGGTCAGTCAAACTTCTACAGCAA… 30S ribosomal protein S1 rps1
2506_slr0923-sacB GTGACTACAGCCGAAGCAGCATCTA… 30S ribosomal protein PSRP-3
1901_slr0444-sacB ATGGCCTTGCTTTCCCTCAACAATC… 3-phosphoshikimate 1-carboxyvinyltransferase aroA
0231_slr1791-sacB ATGTCCCATACTCTGACTAAGCTCG… 3-phosphoadenosine-5-phosphosulfate sulfotransferase cysH
1036_slr0886-sacB ATGACGGCATTAACGGCACAGGTGG… 3-oxoacyl-acyl-carrier protein reductase fabG
0180_slr1099-sacB ATGGCACAACCTTTGATTTTGGGGG… 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ubiX
1305_slr1994-sacB ATGTTAAGTCTTGGTTTGGAAGATA… 3-ketoacyl-acyl carrier protein reductase fabG
2134_sll0330-sacB ATGAATTTACTCAACAAAACTGCTT… 3-ketoacyl-acyl carrier protein reductase fabG
1450_slr1517-sacB ATGTCCCAGACCTATAACGTAACCC… 3-isopropylmalate dehydrogenase leuB
3028_sll1470-sacB ATGAGCGCAAGAACCTTATTTGACA… 3-isopropylmalate dehydratase leuC
1720_sll1444-sacB ATGAGCCAAGTTAAACAAATCCAGG… 3-isopropylmalate dehydratase leuD
2265_slr0229-sacB ATGAACGTTTCCAAAATTGCAGTTT… 3-hydroxyisobutyrate dehydrogenase, Tartronic semialdehyde reductase mmsB
1490_slr2130-sacB ATGGCCACCACTATCCCCGTTCCCC… 3-dehydroquinate synthase aroB
1649_sll1869-sacB ATGAGCGCTCTTTCTTCCCATAGTC… 3-chlorobenzoate-34-dioxygenase cbaB
0714_slr1140-sacB ATGGCCGCCGCAATTAAACCTTTTT… 3-amino-5-hydroxybenzoic acid synthase
1844_slr0955-sacB ATGACTGAAATGCCCAAGAAGAAAT… 23S rRNA (guanosine(2251)-2'-O)-methyltransferase rlmB
2674_sll0098-sacB ATGGCCCCTTCCCCCGCTCCTCTAC… 23S rRNA (adenine(2503)-C(2))-methyltransferase rlmN
2035_slr1945-codA ATGGCAGAGGCACCGATCGCCCCGG… 23-bisphosphoglycerate-independent phosphoglycerate mutase yibO
2398_sll0603-sacB ATGGTTGATTTCACTAACCCCAATA… 2-succinyl-6-hydroxy-2 4-cyclohexadiene-1-carboxylate synthase menD
1330_slr1718-sacB GTGGAAATCTTTGTTTATCACACGC… 2-phosphosulfolactate phosphatase family protein
3105_slr0458-sacB ATGGCTAACGAAAAAATTATTGTTT… 2-phosphoglycolate phosphatase
3308_sll8034-sacB ATGCTAACCACCCAAATCACCCAAA… 2-nitropropane dioxygenase
2502_sll0891-sacB ATGAATATTTTGGAGTATGCTCCGA… 2-ketoacid dehydrogenase; malate dehydrogenase; lactate dehydrogenase, Hydroxyacid reductase citH/mdh
2111_slr0186-sacB ATGAATAGTCCTGTTGATCGTATTT… 2-isopropylmalate synthase leuA
2984_slr1556-sacB ATGAAAATCGCTTTTTTTAGCAGTA… 2-hydroxyaciddehydrogenase ddh
0952_sll1129-sacB ATGACTCCTTCCCTAACCCTTCCCG… 2-hydroxy-6-oxohepta-24-dienoate hydrolase todF
0953_ssr2060-sacB GTGGTAGGATTAGGCGAAAATAATC… 2-hydroxy-6-oxohepta-24-dienoate hydrolase
1839_slr0951-sacB ATGCATTTACTAATTCCAGCGGCGG… 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
0888_slr1542-sacB ATGACTGCTCTACGCATCGGCAACG… 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase
0091_slr0722-sacB ATGTTGGCCAAAGCGTTTGCGGGGT… 16S rRNA (uracil(1498)-N(3))-methyltransferase
2135_slr0383-codA ATGCGTATTTACGGCAATCGCCTCC… 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD rsmD
2571_slr0072-sacB GTGTCATTGAATCTAGACAAAGATA… 16S rRNA (guanine(527)-N(7))-methyltransferase, glucose inhibited division protein B gidB/rsmG
0922_sll1144-sacB ATGGGAGCCAAATCCATGGAAGGAA… 16S rRNA (cytosine(1402)-N(4))-methyltransferase rsmH
1535_sll0818-sacB ATGGGCATTCTTTATTTGGTGGCCA… 16S rRNA (cytidine(1402)-2'-O)-methyltransferase rsml
1452_slr1518-sacB ATGACCGAATCTTCGCCCCTAGCAC… 14-dihydroxy-2-naphtoic acid prenyltransferase menA
2105_sll0158-codA ATGACCTACACCATCAACGCTGACC… 14-alpha-glucan branching enzyme glgB
0832_slr2075-sacB ATGACTTCTATGGCCGCTATTTCCA… 10kD chaperonin groES
0511_sll1945-sacB ATGCACATCAGCGAACTGACCCACC… 1-deoxy-D-xylulose-5-phosphate synthase
2215_sll0019-sacB ATGGTGAAACGCATTTCTATCCTCG… 1-deoxy-D-xylulose-5-phosphate reductoisomerase dxr
2026_sll1848-codA GTGGATTCCGAGATTAATCATCGTG… 1-acyl-sn-glycerol-3-phosphate acyltransferase
0498_sll1752-sacB ATGACCAATTCTCCCCTGGCGATCG… 1-acyl-sn-glycerol-3-phosphate acyltransferase
1288_slr2060-sacB ATGGAATCCCCCATCCAAGCCCAAC… 1-acyl-sn-glycerol-3-phosphate acyltransferase
0957_sll1127-sacB ATGGATTGGCACATTGCAAAACATT… 1%2C4-dihydroxy-2-naphthoyl-CoA synthase menB
2460_slr0204-sacB ATGGGGACATTTACCTATGAAAGGC… 1%2C4-dihydroxy-2-naphthoyl-CoA hydrolase
1500_slr1325-sacB ATGAATGCCGTCGCCGCTCTGCCCA… (p)ppGpp 3-pyrophosphohydrolase spoT
1329_sll1605-codA ATGGCAATGTCAACTCCGGAGGTGA… (3R)-hydroxymyristol acyl carrier protein dehydrase fabZ
2651_ssr1041-sacB ATGGCAGTAACGATACACTTTTTGC… (2Fe-2S)-binding protein
2120_slr0366-codA GTGACCTTTAACGGCACGACCTATA… Ig-like domain, DUF4114 (multiple), Ca2+-stabilized adhesin repeat, S (surface)-layer proteins similar to Pseudoalteromonas tunicata Slr4, Herpes virus major outer envelope glycoprotein (BLLF1)
2119_slr0364-codA ATGCCTAACTCGACCTTGTTCGTCC… DUF 4347, Ig-like domains, Ca2+-stabilized adhesin repeats (multiple)
3567_ssr2849-sacB nblD
3570_ssl2163-sacB ndhQ
0089_llaI.2-sacB GTGCGGAATGTGAGTAATATTATAT… llaI.2