Plasmids and Cultures

This database contains entries for 3,572 known and predicted gene coding sequences in Synechocystis sp PCC 6803 based on the Kazusa genome sequence and nomenclature (http://genome.microbedb.jp/cyanobase/GCA_000009725.1). Plasmids for generating marked mutants and mutant strains can be searched for by gene Name/Accession (e.g. 'sll1226' or '1513_sll1226-sacB'),  gene homology (e.g. 'hydrogenase large subunit'), Gene ID (e.g. hoxH), or by a portion of the gene coding sequence Sequence (CDS).

Please note, the library is still being completed. Plasmids and/or marked mutants may not be available. Users can also search for available materials by Plasmids made or Mutant made.

Plasmids, mutants and the unmarking spacer plasmid pUC19K-UL are currently available on request. Regardless of the segregation status of the mutant, open reception of a cyanobacterial mutant strain we recommend 1-2 cycles of restreaking on a selection plate containing kanamycin (100 μg/ml).

Name CDS Gene Homology Sort descending Gene ID
0355_slr1079-sacB ATGGCAAGTTTTCTGGCTTTACTGC… transcription termination factor Rho; Provisional
2427_sll0377-sacB ATGGCTGAGCCTAGGGCTGTCCTCA… transcription-repair coupling factor mfd
1946_slr0395-sacB ATGCGACTAGAACAGTTACAGGCTT… transcriptional activator protein; NtcB ntcB
1091_slr1871-sacB ATGGACAAACTTGAAAGTATTTACG… transcriptional regulator
1252_slr1245-sacB ATGGATCGTCTTGCTTGTATGCAGA… transcriptional regulator
3556_slr6101-sacB ATGAGCTGCACATACTTAGAATTAA… transcriptional regulator
1383_sll0241-sacB GTGAAAATGAAACCATGGCGTTTTC… transcriptional regulator
2166_slr0780-codA ATGCAATGTCCTCACTGTCAGCACC… transcriptional regulator NrdR NrdR
2642_sll0594-sacB ATGTTTGTGAACAGTTCCCCGATCG… transcriptional regulatory protein
2186_sll0322-sacB ATGTTAAAAACCGTTGCCATACAGG… transcriptional regulatory protein; HypF hypF
1199_slr1738-sacB ATGCCCTTAAACAGAGAAGAAATTA… transcriptional repressor perR
1160_slr1808-sacB GTGGTCTGCCATTCGGACTACATTG… transfer RNA-Gln reductase hemA
2795_slr0713-sacB GTGCCATTGCCTAGTGTGAATTTTA… transfer RNA-guanine transglycosylase tgt
3013_sll1483-sacB ATGAAAACCGCTGCTAGAATTGTTG… transforming growth factor induced protein
1504_sll1233-sacB ATGGCAACCTATCGCATTGAACATC… transglutaminase family protein
0077_sll1049-sacB GTGTCTATGGTTGTCGATTCTGTGC… transglutaminase family protein
0732_sll1070-sacB ATGGTCGTTGCTACCCAGTCCTTAG… transketolase tktA
2519_sll0546-sacB ATGGCCAGTTCCAAACCTCCAGCTC… translation initiation factor
3446_sll5123-sacB ATGCCTGCCAACGTGCTACCAGAAA… translesion error-prone DNA polymerase V autoproteolytic subunit
2380_sll0615-sacB ATGCTGACCGCTTTTACTGCCGGAT… transmembrane protein FT27
1566_sll1263-sacB ATGACCGCCCGTCTTGCCCGTCCCT… transporter
1827_slr0944-sacB ATGGTCAATCGCATTAACCCCAAAG… transporter
1273_slr1257-sacB ATGTTAATCCTGCGTCGCCTAATAC… transporter substrate-binding domain-containing protein
3026_slr1585-sacB ATGGCTTACGATCTTGATTTACGCA… transposase
2774_ssr1176-sacB ATGGTTTTTACCGGGAGTTTGAATG… transposase
2742_slr0799-sacB ATGATTCCTCCCGCAAAGCCCGGAG… transposase
2743_slr0800-sacB GTGAAAGGACGAAAGTGTCACCTAA… transposase
3027_slr1586-sacB ATGCAAAAAGACTTGATAGCGCCGA… transposase
2618_ssr0871-sacB GTGAGAAGCTTTGAATACTTTAAAT… transposase
2619_slr0511-sacB ATGATAATCCGAGAATTTTACAGCA… transposase
2022_slr1936-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
1708_slr1282-sacB ATGGCTTACGATCTTGATTTACGTA… transposase
1456_slr1522-sacB GTGAGAAGCTTTGAATACTTGCATC… transposase
3315_ssl8041-sacB ATGAAATTATCCGTTCTTACTGTGG… transposase
2023_slr1937-sacB ATGTTAAGAGAACTAATTAAGCTCT… transposase
1709_slr1283-sacB ATGTACGATACTAAAAGTCCAGTAT… transposase
1457_slr1523-sacB ATGACAGCTTACTTGCGAGAGCAAG… transposase
1079_sll1780-sacB ATGATATCAAATTTTGGACATATTG… transposase
3316_sll8042-sacB ATGTTAAGAGAACTAATTAAGCTCT… transposase
2686_ssl0172-sacB ATGACTCGAATACCAGATATTAAAT… transposase
0122_ssl0426-sacB ATGATCTTTACAGGAAGCTTGAATG… transposase
1458_slr1524-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
0386_sll0651-sacB ATGTTAAGAGAACTAATCAAGCTCT… transposase
3317_sll8043-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
2687_sll0092-sacB ATGACAAAGACAAGAGAGGCGAAAA… transposase
2781_sll0668-sacB ATGATGGACTATTCCAGAATAGAAA… transposase
1521_ssr2227-sacB ATGCCATCTTTTATTTACAGCGCAC… transposase
0387_sll0650-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
2782_sll0667-sacB ATGCTCATAGACGAAACAGGGGATA… transposase
3319_slr8045-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
1869_slr1635-sacB ATGATATCAAATTTTGGACATATTG… transposase
1365_slr0265-sacB ATGATAATTCGAGAATTTTACAGCA… transposase
0547_sll1930-sacB ATGTTAAGAGAACTAATTAAGCTCT… transposase
2783_sll0666-sacB GTGGATACCATGGGATTACTTCTCG… transposase
3320_slr8046-sacB ATGTTAAGAGAACTAATTAAGCTCT… transposase
1996_ssr0256-sacB GTGCTTAATGCCATTTTTTACATGC… transposase
1556_ssl1507-sacB ATGAATAACGCCCCCATTCATCGAA… transposase
2784_sll0665-sacB ATGATAATCCGAGAATTTTACAGCA… transposase
1997_slr0166-sacB ATGCCAACCCTAGTGCTGGTTGTTT… transposase
1557_sll0808-sacB ATGGCTTACGATCTTGATTTACGTC… transposase
3352_slr5029-sacB ATGACAAAGACAAGAGAGGCAAAAA… transposase
1401_sll1985-sacB ATGAAATTATCCGTTCTTACTGTGG… transposase
0519_ssr3452-sacB ATGGTTGCCCCCGTCAAGCAAAAGA… transposase
2662_slr0099-sacB GTGAGAATGAGAAGCTTTGAATACT… transposase
1402_sll1984-sacB ATGTTAAGAGAACTAATTAAGCTCT… transposase
1466_sll1999-sacB ATGGATAGAGGATTTTGTGACTTAC… transposase
0520_slr2036-sacB ATGATATCAAATTTTGGACATATTG… transposase
0993_slr1357-sacB ATGGCTTACAGTTTAGATTTGAGGC… transposase
1403_sll1983-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
1467_sll1998-sacB ATGGCTTACAGTTTAGATTTGAGGC… transposase
1151_sll1710-sacB ATGATAATTCGAGAATTTTACAGCA… transposase
1404_sll1982-sacB GTGGGTAGGATAGAATGGAGGAAAA… transposase
1468_sll1997-sacB ATGATATCAAATTTTGGACATATTG… transposase
1342_ssr2898-sacB ATGCTCAGAACGGGGTGTGCCTGGC… transposase
1751_sll1094-sacB ATGATATTTGAAGGATACTGCAACG… transposase
3169_sll7001-sacB GTGATGTGTGCATATTGTATGATTT… transposase
2099_slr0180-sacB ATGATATCAAATTTTGGACATATTG… transposase
3454_sll5131-sacB ATGATATCAAATTTTGGACATATTG… transposase
3170_sll7002-sacB ATGACAGATTTTCCTTGGGAATTAA… transposase
2100_sll0161-sacB ATGCCAACCCTAGTGCTGGTTGTTT… transposase
1219_slr0856-sacB ATGGCTTACAGTTTAGATTTGAGGC… transposase
2257_sll0201-sacB ATGTTAAGAGAACTAATTAAGCTCT… transposase
2195_sll0317-sacB ATGGTTGGAACTGGAAAGAATAAAA… transposase
3107_slr0460-sacB GTGAGAAGCTTTGAATACTTTAAAT… transposase
2227_sll0012-sacB ATGATAATTCGAGAATTTTACAGCA… transposase
2101_ssl0296-sacB GTGCTTAATGCCATTTTTTACATGC… transposase
1471_slr2112-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
1220_slr0857-sacB ATGTTAAGAGAACTAATCAAGCTCT… transposase
2258_sll0200-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
2196_slr0352-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
3108_sll0431-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
1472_slr2113-sacB ATGTTAAGAGAACTAATTAAGCTCT… transposase
2197_sll0315-sacB ATGATATCAAATTTTGGACATATTG… transposase
0433_ssr2699-sacB GTGAAAAAGGCTGGCGCTGGACAAG… transposase
3109_ssr0817-sacB ATGACTATAAAGGTAGTATTAGCAT… transposase
3110_slr0462-sacB ATGCCGTCAAATTCAACGTATTTTA… transposase
2292_ssl0769-sacB GTGGGGGTTTTAATCGGGATTATGC… transposase
0042_sll1397-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
1411_slr2095-sacB ATGTCTACACACTGTCACTGTCCTC… transposase
1253_ssr2078-sacB ATGAAAAGTCTGACAGCCTATGAAA… transposase
3363_slr5040-sacB ATGCTCAGAACGGGGTGTGCCTGGC… transposase
0107_sll0700-sacB ATGTTAAGAGAACTAATTAAGCTCT… transposase
1412_slr2096-sacB GTGGCATTTTCTTCAGGCAAAAAAA… transposase
0782_slr1902-sacB ATGTCTACACACTGTCACTGTCCTC… transposase
1254_slr1246-sacB GTGAAAGGGCGAAAGCGTCATCTAA… transposase
0876_sll1716-sacB ATGATAATCCGGGAATTTTACAGCA… transposase
3364_sll5041-sacB GTGGATACCTTACTAGACGAGTTGC… transposase
3176_slr7008-sacB ATGATATCAAATTTTGGACATATTG… transposase
0108_sll0699-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
1729_sll1437-sacB ATGTTAAGAGAACTAATTAAGCTCT… transposase
0783_slr1903-sacB GTGGCATTTTCTCCAGGCAAAAAAA… transposase
0595_sll0986-sacB ATGATAAGGCATATGAGCGTGTTAC… transposase
0469_ssl1922-sacB ATGGCGAACGCTCTATGGTTATTTT… transposase
2767_sll0677-sacB ATGATAATTCGAGAATTTTACAGCA… transposase
1255_sll1157-sacB GTGGCATTTTCTTCAGGCCAAAAAA… transposase
1730_sll1436-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
0784_sll1792-sacB GTGAAAGGACGAAAGCGTCATCTAA… transposase
0470_ssl1920-sacB ATGATACCGAGAGAATTTTACAGCA… transposase
3272_slr7104-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
2768_ssl1277-sacB ATGGAGCACTTCAGCAAGGGATTTT… transposase
2012_sll1861-sacB ATGATAATCCGAGAACTTTACAGCA… transposase
1572_sll1257-sacB ATGTTAAGAGAACTAATTAAGCTCT… transposase
1256_sll1156-sacB ATGTCTACACACTGTCACTGTCCTC… transposase
1793_slr1682-sacB ATGACAAAGACAAGAGAGGCGAAAA… transposase
0785_sll1791-sacB ATGAAAAGTCTGACAGCCTATGAAA… transposase
3273_slr7105-sacB ATGTTAAGAGAACTAATTAAGCTCT… transposase
3021_sll1474-sacB ATGATATCAAATTTTGGACATATTG… transposase
2013_sll1860-sacB ATGATAATTCGAGAATTTTACAGCA… transposase
1573_sll1256-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
1794_sll1560-sacB ATGATATCAAATTTTGGACATATTG… transposase
2770_ssr1175-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
2266_slr0230-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
1795_slr1683-sacB GTGTCAGTAAATGCCTATGGTTACT… transposase
2771_slr0703-sacB ATGATAATTCGAGAATTTTACAGCA… transposase
1323_slr1715-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
1796_slr1684-sacB ATGACTCGAATACCAGATATTAAAT… transposase
1292_slr2062-sacB ATGAAGCTAAGGTATCAGTACCGAT… transposase
2772_smr0002-sacB ATGTTAAGAGAACTAATTAAGCTCT… transposase
1324_slr1716-sacB ATGTTAAGAGAACTAATTAAGCTCT… transposase
3560_slr6105-sacB ATGATATCAAATTTTGGACATATTG… transposase
0349_slr1075-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
2773_slr0704-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
1577_sll1255-sacB ATGATATCAAATTTTGGACATATTG… transposase
1740_sll1103-sacB ATGGTGGACTACGATTGGTTAGGGC… TRAP transporter large permease subunit
1741_sll1102-sacB GTGGACAAATTACTCAAAATTGCCC… TRAP transporter small permease subunit
0825_sll1969-sacB GTGGTAGCAGAATTTCCGGACCGTC… triacylglycerol lipase
2899_sll0533-sacB ATGAAAGTTACCCAGGAAAAATTGC… trigger factor tig
2177_slr0783-codA GTGCGAAAAATCATTATTGCGGGCA… triosephosphate isomerase tpi
2147_slr0773-codA ATGTATATTCTCATTGGTGGCATGG… TrkA family potassium uptake protein
2877_sll0493-sacB ATGAAAACTAGTCATTTTCTCAGTT… TrkA family potassium uptake protein
2690_slr0120-sacB GTGGAGCCCCAGGGGGAAAGAAATG… TrmJ/YjtD family RNA methyltransferase
1939_sll0257-sacB ATGAATGAAAACTCCATGGAATTTT… tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE tsaE
0057_sll1063-sacB ATGACCGTACCTCCTCCCCTTTCCC… tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB tsaB
1531_slr0807-sacB ATGGCAATCATTTTAGCAATTGAAA… tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD gcp/tsaD
0609_sll1300-sacB GTGTTGGCCTGTCCCGATTGGGCCA… tRNA (guanosine(46)-N7)-methyltransferase TrmB trmB
0265_sll1198-sacB GTGCAGTTTGACGTTCTCACCCTGT… tRNA (m1G37) methyltransferase trmD
0575_sll0996-sacB ATGAATGTTTCCCACCGTCGCTACC… tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB miaB
2044_slr0992-codA ATGGTCAAATTAGTCCTAGTTAATC… tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine(34)-2'-O)-methyltransferase TrmL TrmL
1229_sll0844-sacB ATGACGCAAAAAGTAGTGGTGGGAC… tRNA 2-thiouridine(34) synthase MnmA mnmA
1537_sll0817-sacB ATGGCCAAAGTTCCGCCCCTGATTG… tRNA delta-2-isopentenylpyrophosphate (IPP) transferase miaA
2397_slr0644-sacB ATGGGAAAATGTTCTTATCGATTCA… tRNA dihydrouridine synthase DusB dusB
0310_sll0926-sacB ATGACAAAAATTTTCGCTGATTCTT… tRNA dihydrouridine(20/20a) synthase DusA dusA
0988_sll1348-sacB GTGGGCATTGCGCCAGTGTCGGAAA… tRNA epoxyqueuosine(34) reductase QueG queG
1703_slr1278-sacB ATGGCTTGGACATTACTGCACAGTA… tRNA lysidine(34) synthetase tilS
3104_slr0457-sacB ATGTTTGGTTTCCTCAATCTCCATA… tRNA pseudouridine 55 synthase truB
0217_sll1679-sacB ATGAAATATCCCACTTGGTTACGCC… trypsin-like serine protease hhoA
0294_slr0966-sacB ATGAACGCTGTTGCCGCTTGTTTTA… tryptophan synthase alpha chain trpA
2868_slr0543-sacB GTGAACATTACTTCCCCTCTTTCTG… tryptophan synthase beta subunit trpB
1122_slr1884-sacB ATGAAGAATTGTGAAAATGATCACA… tryptophanyl-tRNA synthetase trpS
2703_slr0305-sacB ATGGCCGATTATCTACTAAATGCTC… TVP38/TMEM64 family membrane protein
2264_sll0194-sacB ATGTCAACCCAGCTTGATAACATCA… twin-arginine translocase subunit TatC TatC
0897_ssl2823-sacB GTGACCCTCCAGGAGCAAAAAATGT… twin-arginine translocase TatA/TatE family subunit tatA
1865_sll1533-sacB ATGAACCAACCTCCCCGCCCCTCTG… twitching mobility protein pilT
1988_slr0161-sacB ATGGCTTTGGAATACATGATCGAAG… twitching motility protein pilT
2601_slr0498-sacB ATGTTTGGCAAATATCGACAGAAAA… two pore domain potassium channel family protein
3383_sll5060-sacB GTGATTAATTCGGGAACCTTAATTA… two-component hybrid sensor and regulator xssS
3382_sll5059-sacB ATGACTGAGACTTCTCCGACGGTTG… two-component response regulator xssR
3495_slr6040-sacB ATGAGATTGTTGCTGGTGGAGGATG… two-component response regulator
2586_slr0081-sacB ATGTTGGTTAAATACCATCTAGTAG… two-component response regulator OmpR subfamily hisB, phoB, rre29, sph
3496_slr6041-sacB ATGCAGAACAATAGATTATTCAATC… two-component sensor histidine kinase
1662_slr1468-sacB ATGGCTTTTTGGCTGATGAAGTCCG… tymocyte protein cThy28kD
2005_slr1928-codA ATGCTCCCCCCAGGCTTTTATCTCT… type 4 pilin-like protein pilA5
2006_slr1929-sacB ATGGTGATGAAACTTCCTAATCCTA… type 4 pilin-like protein pilA6
2007_slr1930-sacB ATGGCTTACAAGAATGAACTGATAA… type 4 pilin-like protein pilA7
2008_slr1931-codA GTGAAAATTCTATGGTACTTAATGA… type 4 pilin-like protein; pilA8 pilA8
0064_slr1120-sacB ATGGATCCCCTGATTGCCCCCCTTG… type 4 prepilin peptidase hofD/tapD/pilD
3283_sll8009-sacB GTGCAAGACATAGATGGTAACGAGG… type I restriction-modification system M subunit
3284_ssl8010-sacB ATGAACCCAGTTAGCCACAACAACA… type I restriction-modification system M subunit
3557_slr6102-sacB GTGTCTAGGATTATGAAATCAAGCC… type I restriction-modification system R subunit
3280_sll8006-sacB ATGAAACTGAAGCCCTATCCCGAAT… type I restriction-modification system S subunit
3274_sll8049-sacB type I site-specific deoxyribonuclease chain R
3184_slr7016-sacB ATGTCTACACTTTACTTGACTCAAC… type I-D CRISPR-associated endonuclease cas1d
3178_slr7010-sacB ATGTCATTGCCCAAAGTAGGTGCTA… type I-D CRISPR-associated helicase cas3
3179_slr7011-sacB ATGACAACACTTCTTCAAACTTTGC… type I-D CRISPR-associated protein cas10d
3180_slr7012-sacB ATGTTAGATAGTCTCAAGTCTCAAT… type I-D CRISPR-associated protein cas7d
3181_slr7013-sacB ATGACAAAAATTTATCGCTGTAAAT… type I-D CRISPR-associated protein cas5d
0685_slr2016-sacB ATGTCAGCAAAACAACTATGGAAAA… type II secretion system protein pilA10
3552_slr6097-sacB ATGTCTAATAATTGGAATATATTAA… type Ii site-specific deoxyribonuclease subunit S
0353_ssr1766-sacB GTGAGCAATCTTCCAAGCGTCCAAG… type II toxin-antitoxin system HicA family toxin
1309_slr1999-sacB ATGAAGGTTAAAGTAATCCTCAAAA… type II toxin-antitoxin system HicA family toxin