Plasmids and Cultures

This database contains entries for 3,572 known and predicted gene coding sequences in Synechocystis sp PCC 6803 based on the Kazusa genome sequence and nomenclature (http://genome.microbedb.jp/cyanobase/GCA_000009725.1). Plasmids for generating marked mutants and mutant strains can be searched for by gene Name/Accession (e.g. 'sll1226' or '1513_sll1226-sacB'),  gene homology (e.g. 'hydrogenase large subunit'), Gene ID (e.g. hoxH), or by a portion of the gene coding sequence Sequence (CDS).

Please note, the library is still being completed. Plasmids and/or marked mutants may not be available. Users can also search for available materials by Plasmids made or Mutant made.

Plasmids, mutants and the unmarking spacer plasmid pUC19K-UL are currently available on request. Regardless of the segregation status of the mutant, open reception of a cyanobacterial mutant strain we recommend 1-2 cycles of restreaking on a selection plate containing kanamycin (100 μg/ml).

Name CDS Gene Homology Gene ID Sort descending
3482_ssr6027-sacB ATGTATTTTGACCGTTTCGACATTG… hypothetical protein
3546_slr6091-sacB ATGGAAAACTTCGACACCTCGACCT… hypothetical protein
3356_sll5033-sacB ATGAAAAGCATCTTAAGTTTTATCA… DUF3122 domain-containing protein
3420_sll5097-sacB ATGACGGCTCAAAATGTACTTTCCC… WYL domain-containing protein
3230_sll7062-sacB ATGCCTAACGTTATTGTTTCCCCTT… hypothetical protein
3294_sll8020-sacB ATGAGCCTCCCCGACAATGTCACCA… Crp/Fnr family transcriptional regulator
3168_sll7106-sacB exodeoxyribonuclease V alpha chain
2978_slr0664-sacB ATGTCGAATAATCTCCATTTAGTCA… type II toxin-antitoxin system RelE/ParE family toxin
3042_ssl1378-sacB ATGAGTAATCCTGAAGGTTATAACG… hypothetical protein
2538_slr0583-sacB ATGAAAATTTTGGTCACCGGCGGCA… GDP-L-fucose synthase
2602_sll0489-sacB ATGATTGAGGTTGAACATCTCAGCA… ABC transporter ATP-binding protein
2476_sll0886-sacB ATGCTTTCCCTTCTACGAAAATATT… tetratricopeptide repeat protein
2286_sll0406-sacB ATGAGTATTATTTGTCTTGATACAA… PIN domain-containing protein
2350_slr0487-sacB ATGGAGTTTAAAAATTTTTTCGATG… PAS domain-containing protein
2160_sll0761-sacB ATGACCATGAAGACAGCCCAAATAA… hypothetical protein
2034_slr1944-sacB ATGATTGACTTCAAACGTTTGTTAG… alpha/beta hydrolase
0034_slr1493-sacB GTGGACCGATCGCCGCTAATGCCAT… DUF1636 domain-containing protein
2098_slr0179-sacB ATGAATATTGAAGCTAAGCTAAGTC… hypothetical protein
0098_slr0730-sacB ATGGCCAGCACCCCCATCCAGAGCG… DUF3119 family protein
1908_sll0419-sacB ATGTACTTTCTGCTTGTAACTCTGG… hypothetical protein
1972_slr0148-codA ATGACCATGCCACCATTATGGAATT… ferredoxin
1656_sll1389-sacB ATGACGGATTTACCCCATTCCCCGG… hypothetical protein
1404_sll1982-sacB GTGGGTAGGATAGAATGGAGGAAAA… transposase
1468_sll1997-sacB ATGATATCAAATTTTGGACATATTG… transposase
1278_slr1262-sacB ATGGCACTCCAAGTGGTGGGCTATT… sulfite exporter TauE/SafE family protein
1342_ssr2898-sacB ATGCTCAGAACGGGGTGTGCCTGGC… transposase
1026_slr0881-sacB ATGTTGGCCCTAATTTTGGCGATCG… hypothetical protein
1090_sll1773-sacB ATGATCACACTCCGCCCCTCCGAAG… pirin family protein
0964_slr1436-sacB ATGGATAATGTTACTCGCTATCAAA… class I SAM-dependent methyltransferase
0774_slr1895-sacB ATGCCAAGCAAGGGAAGGGGAAACG… metallophosphoesterase
0648_slr1702-sacB ATGTCCCTCCCCGTTCCCTCCACCA… DUF1995 family protein
0522_slr2038-sacB ATGCCTATTACAGAATTAGCCCCCG… Uma2 family endonuclease
0523_sll1942-sacB ATGGGCAACATCTTTTTTCCGTGGG… hypothetical protein
0587_slr1028-codA ATGAGTATAACTTTATCTGATCGCC… DUF4114 domain-containing protein
0397_sll0641-sacB ATGGCCAAACTAAATCTTGCCCATC… hypothetical protein
0271_slr1299-sacB ATGCGTGTTTGTGTTATCGGAACGG… UDP-glucose dehydrogenase
0335_slr1619-sacB GTGAATCCATTAGACTCTTTTAAAT… cephalosporin hydroxylase
0145_sgl0002-sacB GTGGAAGCAACTCCTACTCCTGTCC… hypothetical protein
3515_sll6060-sacB ATGACAGGACAAGAAATTTTGATAA… N-acetyltransferase
3389_sll5066-sacB ATGAAGATAATCGCCGTGACTGGCT… ParA family protein
3453_sll5130-sacB GTGCGATTCAACGATTCTGAGATTG… HNH endonuclease
3263_slr7095-sacB ATGACATCTGTTTTTCACGTTCTAA… adenylyl-sulfate kinase
3327_sll5004-sacB GTGAATATGTTAGGTCGCCACTCTG… DUF433 conserved domains
3137_slr0589-sacB ATGGATGTTATGGATTTACCTGTTC… cofactor assembly of complex C subunit B
3201_sll7033-sacB ATGAGTCGATTGTACGGTGACGAAA… hypothetical protein
3011_sll1485-sacB ATGTTCACCCTCAATGACCAAAATC… DUF2231 domain-containing protein
2885_ssr1558-sacB ATGGATTGGCAACTGTTTGGTCTAA… TMEM165/GDT1 family protein
2949_sll1366-sacB ATGGCGACTATCCACGGTAATTGGC… helicase of the snf2/rad54 family
2633_slr0522-sacB ATGAAGACTTCTATTTTATCTGCAT… hypothetical protein
2697_slr0299-sacB ATGGAAATTCCCGTCCGCTATCAAC… hypothetical protein
2507_slr0924-sacB ATGCCTTGGCTACAAACCTTTTCTT… hypothetical protein
2381_sll0614-sacB ATGTTTGATCCAACGGCAATTATTG… DUF4253 domain-containing protein
2319_slr0060-sacB ATGAAACCCAAAGTGGCGATCGCCT… patatin-like phospholipase family protein
2129_slr0377-codA ATGTCTATTCCCCCTAGTGCTCTGG… hypothetical protein
2003_slr1926-sacB GTGTCGAGAGCGCAACCATTGTTGC… hypothetical protein
0003_slr0613-sacB ATGTCCTATCTAATCGCTGTGGTAG… Cyanobacterial Signature Protein
2067_ssl0564-sacB ATGCTGGCCGGGAACTATCAACCCC… response regulator like protein
1877_sll1526-sacB ATGACTTGGAATGAGGGCTACGTCC… methyltransferase domain-containing protein
1941_slr0294-sacB ATGACGAAGAAAGAGGCTCTTACCT… hypothetical protein
1751_sll1094-sacB ATGATATTTGAAGGATACTGCAACG… transposase
1625_slr1972-sacB ATGTTAGACGCCGTCATTATTCTCC… PIN/TRAM domain-containing protein
1689_sll1178-sacB GTGACTCATATTCTTGGCATTTCTG… nodulation protein
1499_sll1236-sacB ATGTCGTCTACGCTACCACTCGATT… hypothetical protein
1563_sll0803-sacB ATGAATACCCCCTCTTCGACCCAAC… DUF29 domain-containing protein
1437_slr1508-sacB ATGCATATTGCTTGGTTAGGAAAAA… glycosyltransferase family 1 protein
1247_sll1162-sacB ATGATGGATTTTCAAGATACCTGGG… DUF4079 domain-containing protein
1311_slr2001-sacB ATGCCCCTATCCTCCCAACCGGCCA… cyanophycinase
1121_ssl3364-sacB ATGAGCAATATTCAAGAAAAAATCG… hypothetical protein
1185_slr1732-sacB ATGCCCATTTCTCCCACCTCCCTAG… hypothetical protein
0995_sll1276-sacB GTGGGGCGCATGGCCAAATATATCG… ABC transporter
1059_slr1407-sacB ATGAAACAGGTTAATTTTTTAGCTG… hypothetical protein
0681_slr2012-sacB ATGAAAATTGTTTACCTAATTGCGG… cation:proton antiporter
0555_sll1837-sacB ATGGTTAATAAAGGGTTATGGTCTG… DUF1036 domain-containing protein
0619_ssl2559-sacB ATGAATAATTGCGTAATTTCTTTTC… ferredoxin
0303_sll0933-sacB ATGGCTGACCCCACCAATCGAGACC… DUF3464 family protein
0367_sll1022-sacB GTGTCCATGTTTGACTTCGATCTAC… membrane protein
0241_slr1796-sacB ATGATTATGTCTGTGTGTTTGCCAT… Cyanobacterial Signature Protein (thylakoid membrane protein)
3483_slr6028-sacB ATGACAACCACCACTAAAACCACCG… siphovirus Gp157 family protein
3547_ssl6092-sacB GTGAAATTTATGGCTAAGGAAAAAA… hypothetical protein
3357_sll5034-sacB ATGCAAACTTTACCACAACGGATTT… DUF3365 domain-containing protein
3421_ssl5098-sacB ATGAAAAGTCGGCGATTATCTATCC… hypothetical protein
3231_sll7063-sacB ATGACAGTCGGAACATTGGGCGTTG… TIGR03986 family CRISPR-associated RAMP protein
3295_slr8021-sacB ATGACGGTCACTCCACTCAATCTTA… class I SAM-dependent methyltransferase
3105_slr0458-sacB ATGGCTAACGAAAAAATTATTGTTT… 2-phosphoglycolate phosphatase
3169_sll7001-sacB GTGATGTGTGCATATTGTATGATTT… transposase
3043_sll0729-sacB ATGGAGGAAACCGGGGAAATAAATA… DNA adenine methylase
2665_slr0103-sacB ATGGCCCTTTCTCCCCTCTCCCGCT… hypothetical protein
2539_slr0825-sacB GTGATTTCCATGACCACTAAACAGA… S9 family peptidase
2413_slr0418-sacB ATGGCCCCCCAACCTACCGCAACCA… TIGR04168 family protein
2477_slr0895-sacB ATGGTTTCTGGAAAAAGGCTTCGTT… TetR/AcrR family transcriptional regulator
2287_sll0405-sacB ATGACCCAAAGCTATGGAGATACCA… PQ-loop repeat-containing protein
2351_slr0488-sacB GTGTCTCCGTCTGGTAAATCGTCCC… murein biosynthesis integral membrane protein MurJ
2225_slr0013-sacB ATGAAGCTCATCGATTCCCGTGGCA… flavin reductase family protein
0035_slr1494-sacB ATGCCACCTATCTATCAACTGCTTT… ABC transporter
2099_slr0180-sacB ATGATATCAAATTTTGGACATATTG… transposase
0099_slr0731-sacB ATGACCCCAGAATTGAATCCTAATT… Cyanobacterial Signature Protein
1909_sll0418-sacB ATGCCCGAGTATTTGCTTCTGCCCG… sterol-C-methyltransferase
1973_slr0149-sacB ATGTTTAAGCCGTTGACTCGTCTCA… hypothetical protein
1657_sll1388-sacB ATGGGCTACGGAAAGATTTTAGTTG… universal stress protein
1405_slr2092-sacB ATGGCTAGGTCTTTGGGCAGAACGC… Uma2 family endonuclease
1469_slr2110-sacB ATGACTGACTATCAAGGTTATTTAG… sugar phosphate isomerase/epimerase
1279_slr1263-sacB ATGCTTTCCCTGCTCACACCTCTAG… DUF3370 domain-containing protein
1343_sll1596-sacB ATGGAAAATTTAAACGCTCTATCTG… KaiB-like protein 1
1153_ssl3291-sacB ATGGCCAAAGCAATCTGGAATGGGG… DUF427 domain-containing protein
1217_sll0854-sacB ATGGCATTTTTTAAAGAAGACCCGG… Cyanobacterial Signature Protein
1027_sll0872-sacB ATGGCTGGGGGCATTTTAAAGACTG… hypothetical protein
1091_slr1871-sacB ATGGACAAACTTGAAAGTATTTACG… transcriptional regulator
0901_sll1461-sacB ATGGTTATCGCCCCCCATCGCACTA… Uma2 family endonuclease
0965_slr1437-sacB ATGTCCGCTGAATTTTTTGACTGCC… hypothetical protein
0775_slr1896-sacB ATGGCTGAAGTTATCCCCAACAATC… DUF1823 family protein
0714_slr1140-sacB ATGGCCGCCGCAATTAAACCTTTTT… 3-amino-5-hydroxybenzoic acid synthase
0336_slr1062-sacB ATGGATCTGAAGCAGGCAGAAGTCG… type II toxin-antitoxin system PemK/MazF family toxin
0210_slr1778-sacB ATGAATATTTCTTTTATTTCTTCGA… hypothetical protein
3516_ssl6061-sacB ATGGGCGGACATCCACAAGGAAAGT… hypothetical protein
3390_sll5067-sacB ATGCTCAAAACGGCCTATATTGTCT… ATP-binding protein
3454_sll5131-sacB ATGATATCAAATTTTGGACATATTG… transposase
3264_slr7096-sacB GTGAGATATAAAAATAATTGTCGAA… hypothetical protein
3328_slr5005-sacB ATGGCCAATCCTTATGCCTCCTATG… DUF4114 domain-containing protein
3138_slr0590-sacB ATGGGCTTAGCCGTTGACAGTAATT… DUF2993 domain-containing protein
3202_sll7034-sacB ATGACGAGTGCATTACAGGCGATCG… DUF433 domain-containing protein
2950_slr1461-sacB ATGAGCCAAAATTCCAAAACTGCCC… rhomboid family intramembrane serine protease
2760_slr0697-sacB ATGACCAAATTTTTTGTGGACCGGG… 5-oxoprolinase
2634_sll0471-sacB ATGATTACCTACTGCCGCCGAACTG… FAD-dependent oxidoreductase
2698_slr0300-sacB ATGTATTCCACCATCCTCAAGCTAA… Uma2 family endonuclease
2446_slr0195-sacB ATGGATACCCTTTCCCCCAGACTTT… hypothetical protein
2256_slr0224-codA ATGGATCATTTATTTTGGATTTATA… sterol desaturase family protein, IS630 family transposase
2320_slr0061-sacB ATGCTAAAAAAAATTTTCATTCTCG… hypothetical protein
2130_slr0378-sacB ATGCTGGTGCAAATACGGGGTAAAT… 7-beta-(4-carbaxybutanamido)cephalosporanic acid acylase
2194_slr0351-sacB ATGGCCAGTTCGGTGATCGCCGCCA… SAM-dependent methyltransferase
2004_slr1927-codA GTGCGGAAGCAGAGGAGCAAAGAAA… DUF58 domain-containing protein
0004_sll0558-sacB ATGTCTGATAATTTGACCGAACTCT… Ycf53-like protein
1942_slr0392-sacB ATGCTTATGAGGAGGCAAAAATTGG… hypothetical protein
1752_slr1161-sacB ATGTCATTTTCAGAATCTAAAATTA… nucleoside deaminase
1816_slr0935-sacB ATGTCCCCTGTTTATCTCTGGATTG… NfeD family protein
1626_sll1886-sacB ATGCGAATTTGGCCAGTGGTGCTGA… hypothetical protein
1690_slr1266-sacB ATGTCGAAGAATTTTAACTTGCTAT… DUF2808 domain-containing protein
1564_sll0802-sacB ATGGGGCAAAAAACTACAACTTTGT… DUF29 domain-containing protein
1374_slr0269-sacB ATGCCATCTACTTTTTCCCAACCAT… hypothetical protein
1248_sll1161-sacB GTGAATAAAGTGCCGACTCTTATCT… adenylate cyclase
1186_sll1631-sacB ATGGATCAACCCCTACCCACCCATG… nucleoside deaminase
1060_slr1409-sacB ATGCGTATTTTTCCTGTATTTTTAC… beta transducin-like protein
0870_slr1840-sacB ATGCGTCAAATTTTGATTGCACCAG… glycerate kinase
0808_slr1205-sacB ATGTTGGATCAGGGCCCGTTGGCAA… ferredoxin component, Rieske (2Fe-2S) protein
0682_slr2013-sacB ATGGTTCCCACTCTCCGCTTTTATA… DUF58 domain-containing protein
0556_slr1912-sacB ATGATGTCGTTTAACCCCCAGATTG… anti-sigma F factor antagonist
0620_sll1296-sacB ATGTTTGATGCCGCCACCCTCGCCG… CheA like protein
0430_sll1507-sacB GTGGATTTAGTGGTTATGAATGTGC… alpha/beta hydrolase
0494_slr1770-sacB ATGCACTATACCTTTGATATTTTGG… hypothetical protein
0368_sll1021-sacB ATGCAAAGTAAATTTTGGTTTGAAT… flotillin family protein
0178_slr1097-sacB ATGGTCACCATCACCGTTACCCCAG… DUF1817 domain-containing protein
0242_sll1665-sacB ATGGAAACTTTATCTTTGGTGTTGG… hypothetical protein
3484_slr6029-sacB ATGCTCCTAGCCGAAATTCTCGAAA… hypothetical protein
3548_sll6093-sacB ATGATTATCACCGTTACTGCTTTTA… ParA family chromosome partitioning protein
3358_sll5035-sacB ATGCAAATATCTGTGAATAAAACCC… ArsR family transcriptional regulatory protein
3422_ssl5099-sacB ATGAAAGGTGATCATTATTCTCCTA… HNH endonuclease
3232_sll7064-sacB ATGCCAGCAGGAGGCCGCCTAATGA… TIGR03984 family CRISPR-associated protein
3296_slr8022-sacB ATGAAAACCCCAATCCTTTCGTTTC… cupin domain-containing protein
3106_slr0459-sacB ATGGAAATGGGTCGGCCAGTGCAAT… hypothetical protein
3170_sll7002-sacB ATGACAGATTTTCCTTGGGAATTAA… transposase
2980_slr0666-sacB ATGGACAACGCGACAATCACTGCAA… hypothetical protein
2854_slr0535-sacB ATGATCAAACGTTTTTTCCTCACCA… serine proteinase
2792_ssl1263-sacB ATGGGAGGATTGACCGTGAATCTAG… DUF2997 domain-containing protein
2666_slr0104-sacB ATGAAAGCAATTTTTGCCCTCCGCC… HD family phosphohydrolase
2604_sll0488-sacB ATGGTTCAGGTCGTTGATGATCCGA… Uma2 family endonuclease
2414_sll0385-sacB ATGTTCAACGGGTTTAGGTTTAACG… ABC transporter
2478_slr0896-sacB ATGACAGATATTTCAATGCGATTTG… MATE family efflux transporter
2352_slr0489-sacB ATGGCAACCTTCTTGGCCCTATTAC… hypothetical protein
2162_sll0759-codA ATGGGAAAGAGTTACCTCATGGGCG… ABC transporter
0036_sll1401-sacB ATGAGATATAAGGTGGATCTAGAAA… hypothetical protein
2100_sll0161-sacB ATGCCAACCCTAGTGCTGGTTGTTT… transposase
1784_slr1679-sacB ATGTCCTTTGATACCCCGCTCAAAC… D-alanyl-D-alanine dipeptidase
1848_slr0959-sacB ATGCTAGCTTCGTTAACACAGCCGT… CPBP family intramembrane metalloprotease
1722_sll1442-sacB ATGAAATTGCCCTACGGAAACCAAG… hypothetical protein
1596_slr1353-sacB ATGCCAATGTCCAGTCTGATTTCCC… hypothetical protein
1470_slr2111-sacB ATGATAGTTAACCACGATAAACAAA… CBS domain-containing protein
1280_sll1961-sacB GTGATGGCTTGGGCAAGGTTACCAG… GntR family transcriptional regulator
1218_sll0853-sacB ATGAAGCCTGTTGCCCCAAGAAGCT… Chromophore lyase CpcS/CpeS 1
1028_slr0882-sacB GTGACTATGGCCGTTGGCACCTTCA… YjgP/YjgQ family permease
0966_slr1438-sacB ATGTACAACATTAGCTTTACCCCCG… aldose 1-epimerase
0463_slr1056-sacB ATGGAATTAAAAAGTGTTAAATTAA… ATP-dependent endonuclease
0337_slr1063-sacB ATGTCCAAAAATGACAAGCCATTAG… glycosyltransferase
0147_slr0254-sacB ATGGCCCTGTTTAACCATTATCAGG… RDD family protein
3517_ssr6062-sacB ATGGATTTTAATCCCAATGAGTGGC… hypothetical protein
3391_ssl5068-sacB GTGAGGAGTTCTAGCCATGGAACCC… DNA cytosine methyltransferase
3455_slr6110-sacB EAL domain-containing protein
3329_sll5006-sacB ATGTCCATCGCTGGAAAGTCCAAAG… hypothetical protein
3139_sll0576-sacB GTGATTATGAAAATTTTGATTACCG… SDR family NAD-dependent epimerase/dehydratase
3203_ssr7035-sacB GTGCGCCCAATCCAATCTGGGTCAC… hypothetical protein
3013_sll1483-sacB ATGAAAACCGCTGCTAGAATTGTTG… transforming growth factor induced protein
3077_ssr2781-sacB ATGCCCATGGAAGCCGGACAACAAT… hypothetical protein
2951_sll1365-sacB ATGGAGCCGGTAACTGTGGGGCAAA… HAMP domain-containing protein
2761_slr0698-sacB ATGGCCATCGAGATTGAACGTAAAT… CYTH domain-containing protein
2825_sll0037-sacB ATGACCTTAACCAGTGTGCCCGCCC… sirohydrochlorin cobaltochelatase
2635_sll0470-sacB ATGTCTATGCCATCTATGCCTAAAT… DUF2808 domain-containing protein
2509_sll0556-sacB ATGGAAGGATCATTTTCCCTTACCC… hypothetical protein
2447_slr0196-sacB ATGACCAAAGTGCTAACACCAATGA… hypothetical protein
2257_sll0201-sacB ATGTTAAGAGAACTAATTAAGCTCT… transposase
2321_sll0060-sacB ATGAATTGGCCCAATATGCCCCCTG… AI-2E family transporter
2131_slr0379-sacB GTGGCGATCGCCAAGGGAAATCAAG… dTMP kinase
2195_sll0317-sacB ATGGTTGGAACTGGAAAGAATAAAA… transposase