Plasmids and Cultures

This database contains entries for 3,572 known and predicted gene coding sequences in Synechocystis sp PCC 6803 based on the Kazusa genome sequence and nomenclature (http://genome.microbedb.jp/cyanobase/GCA_000009725.1). Plasmids for generating marked mutants and mutant strains can be searched for by gene Name/Accession (e.g. 'sll1226' or '1513_sll1226-sacB'),  gene homology (e.g. 'hydrogenase large subunit'), Gene ID (e.g. hoxH), or by a portion of the gene coding sequence Sequence (CDS).

Please note, the library is still being completed. Plasmids and/or marked mutants may not be available. Users can also search for available materials by Plasmids made or Mutant made.

Plasmids, mutants and the unmarking spacer plasmid pUC19K-UL are currently available on request. Regardless of the segregation status of the mutant, open reception of a cyanobacterial mutant strain we recommend 1-2 cycles of restreaking on a selection plate containing kanamycin (100 μg/ml).

Name CDS Gene Homology Gene ID Sort descending
0349_slr1075-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
0223_sll1675-sacB ATGACCCTTTCTTCTGGTTTACCTA… VOC family protein
3529_slr6074-sacB ATGAAAATTATTGTTAAATTACAAG… hypothetical protein
3403_sll5080-sacB ATGAGCACCATCACTACCAAAGACG… non-heme chloroperoxidase
3467_slr6012-sacB ATGGACAGCCCCCGGCAATTGTCAT… hypothetical protein
3277_ssl8003-sacB ATGACCAATCAACAGGGTAATGTTA… hypothetical protein
3341_slr5018-sacB ATGAATCGTGACAACGCTTATCTGC… DUF86 domain-containing protein
3215_sll7047-sacB ATGACAAACCGAATGATAGAGACTT… DUF4386 domain-containing protein
3089_sll0447-sacB ATGGAATTTTTTAAACTTATATCAG… hypothetical protein
2963_slr0654-sacB GTGGTAATTCCAACCCTTAAGGCAC… hypothetical protein
2773_slr0704-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
2647_slr0617-sacB ATGATTAACGGAAAGCCCCAACCTC… hypothetical protein
2711_sll0280-sacB ATGGAAAAAGATCATTGTTCCCTCG… hypothetical protein
2395_slr0643-sacB ATGTGGCTTCTTTTGCTCATCCTTG… fbt
2459_sll0180-sacB ATGGTTAGAAAACGCTCCCAATTCC… efflux RND transporter periplasmic adaptor subunit
2269_slr0232-codA ATGGGTTGGGAATTTTTTTCGCTAG… DedA family protein
2144_slr0770-codA ATGGCGACAACCCTAATCAATCATA… DUF433 domain-containing protein
2208_sll0309-sacB ATGGTCAATCTTCTCGTAATTAGTT… hypothetical protein
1766_slr1171-sacB ATGACTGCCCAAGCCAACAACACAA… glutathione peroxidase
1830_slr0947-sacB GTGGTCGATGACGAGGCCAGCATCC… response regulator transcription factor
1514_sll1225-sacB ATGACCAACCAAACTTCTTTCACAA… PIN domain-containing protein
1578_sll1254-sacB ATGCTGGAAATTGTAGCGGCCATTT… hemolysin
1388_sll0236-sacB ATGACCGTTTCTCCCTTTGATTTCA… hypothetical protein
1326_sll1608-sacB ATGACTTTCTCCTTCCCCATGGCCC… DUF3488 domain-containing protein
1136_sll2009-sacB ATGCGTAATCATCAGTCCATCCATC… insulinase family protein
1200_sll1620-sacB ATGGGTGCGCTATTGGCTGTGTTGC… DUF1499 domain-containing protein
0884_slr1537-sacB ATGGTTAATCAGCCCCTAGTAAGCA… glycosyltransferase family 2 protein
0948_sll1131-sacB ATGATTACCAGGGAAACCTTGCCCG… GtrA family protein
0822_sll1971-sacB ATGCACTCACAAAAATTGGTCACAG… glycosyltransferase family 1 protein
0696_sll1915-sacB ATGCCCCTGCATTTCGCCGCCTTGA… hypothetical protein
0506_sll1749-sacB ATGGAATCTCAACTGCAATTCCCCA… DUF29 domain-containing protein
0570_slr1920-sacB ATGTTTCTCAAGATTTTTCAAAAGA… hypothetical protein
0254_sll1654-sacB ATGTCGATCAATTGCTGGCGATCGC… universal stress protein
0318_slr0977-sacB ATGAAAACTTCCCCCCCAGAACTGA… ABC transporter
0128_sll0230-sacB GTGTGTCAAAATCTAGGGAAATTTG… MTH1187 family thiamine-binding protein
0192_slr1107-sacB ATGGCAGGTAACGAGAATATTGCCG… hypothetical protein
3498_slr6043-sacB ATGCTTAATGCCATCCTCAAATGGT… CusA/CzcA family heavy metal efflux RND transporter
3562_slr6107-sacB ATGATTTTATTTCAGGGGAAAGATT… CAP domain-containing protein
3372_sll5049-sacB ATGGCTTCCCTCAATAAACTGGCCA… hypothetical protein
3436_ssl5113-sacB ATGTCCACTGTTACCGAGTCAGACC… hypothetical protein
3246_sll7078-sacB GTGGATGCTAACTTTAATTTTCCTA… TIGR03985 family CRISPR-associated protein
3310_slr8036-sacB GTGCTGTCTCTAGGGCAAATCTATG… GNAT family N-acetyltransferase
3120_slr1182-sacB ATGAATCAATTTAGGGACTGGGGTT… isoprenylcysteine carboxylmethyltransferase family protein
2994_slr1565-sacB ATGCTGCAATTGACCCCCAGTGCCG… iron-sulfur cluster assembly accessory protein
2932_slr1428-sacB ATGGCGATCGCCAATTCCCGTTTTC… GTPase family protein
2742_slr0799-sacB ATGATTCCTCCCGCAAAGCCCGGAG… transposase
2806_sll0740-sacB ATGGCCAAACGGCGATCGACGCAAA… Uma2 family endonuclease
2616_slr0509-sacB ATGTCCCAGTGGATCACAGAATGGA… alkaline phosphatase like protein
2680_slr0110-sacB GTGTCCACACCAAAGATTTTGGCAG… ParA family protein
2364_sll0689-sacB ATGTTTATGAACCCATTGCTCCCTC… Na/H+ antiporter
2428_sll0376-sacB ATGACCCCATCAGATTATCAGGATC… hypothetical protein
2238_sll0005-codA ATGTCTCCAGCCCCCATGCCCGTTA… ABC1-like
2112_slr0359-sacB ATGGACAAGGGAGGAAAGACCTATA… EAL domain-containing protein
2176_sll0749-sacB GTGGAAAAAATCATGAGCGAACAAA… hypothetical protein
1986_sll0142-sacB ATGTCCTCCCCCAACTCCGTTTTTA… efflux RND transporter permease subunit
1924_sll0264-sacB GTGTTTGGCGGAAGTGTCAACGGAA… aromatic ring-hydroxylating dioxygenase subunit alpha
1798_slr1686-sacB ATGGCCGCCATCACCCTCACCCTCC… FHA domain-containing protein
1672_sll1381-sacB ATGGCCAATTTAGAAACCTATGTGC… hypothetical protein
1736_slr1534-sacB ATGTCTTCCCTGCCCAAAAATTTTC… LD-carboxypeptidase
1546_slr0815-sacB GTGTTTTTTTGTTGCCCATTGTTCC… DUF3007 family protein
1610_slr1963-sacB ATGCCATTCACCATTGACTCTGCCC… orange carotenoid-binding protein
1484_slr2125-sacB ATGACGAAAAACACAACCGTAGAGC… DUF115 domain-containing protein
1294_sll1950-sacB ATGTCTTCCCCCAGCCTTTCCCCCC… FkbM family methyltransferase
0058_slr1119-sacB ATGCAAACGATTTCCCCTGCGTCGA… hypothetical protein
1168_slr1814-sacB ATGGTTGCTGAACTCCACAAAACCA… DUF29 domain-containing protein
0122_ssl0426-sacB ATGATCTTTACAGGAAGCTTGAATG… transposase
1232_slr0864-sacB ATGCTCCGACTCGAACACATCCGCA… ABC-F family ATP-binding cassette domain-containing protein
0916_slr1748-sacB ATGGCCCTCAAACTTTATTTCCTGC… histidine phosphatase family protein
0854_sll1735-sacB ATGCCTAACATTGTTGAAATTGCGG… fasciclin domain-containing protein
0728_slr1149-sacB ATGACCCCGTCCCCTGCTGCTCCCC… ABC transporter ATP-binding protein
0538_slr2048-sacB ATGCCAAGCCGTCCCTTGGGGCGGA… tetratricopeptide repeat protein
0602_sll0980-sacB ATGGCTAATTCTTCTCCCCCCAATG… ribonuclease HI
0476_sll1647-sacB GTGATCCCATCTGACCTTTTCCTAC… N-acetyltransferase
0350_slr1076-sacB ATGCCTAGAAACCTCAAAGTTCACC… glycosyltransferase family 4 protein
0224_slr1787-sacB ATGGGCGGTTCTGCCAAATTTTTGT… thiamine-phosphate kinase
3530_slr6075-sacB ATGACCAGACTCTTTAACCTAGAAT… hypothetical protein
3404_sll5081-sacB ATGAATGAGAAATTTTTCAAATTAG… DUF1963 domain-containing protein
3468_slr6013-sacB ATGGAAGGGGATGTTGTACAGCTAA… DUF2357 domain-containing protein
3278_sll8004-sacB ATGTGGAACGGGAGAGAATATATGT… hypothetical protein
3342_ssr5019-sacB ATGCAAAGCAATAAGCAGATCCACC… aminotransferase class V-fold PLP-dependent enzyme
3152_sll0565-sacB ATGGAAGAAACTTTTGTCGCACCGA… hypothetical protein
3216_ssl7048-sacB ATGCTTGCTAAGTTGACATCTAAGA… AbrB/MazE/SpoVT family DNA-binding domain-containing protein
3026_slr1585-sacB ATGGCTTACGATCTTGATTTACGCA… transposase
3090_sll0446-sacB ATGACTAACCAACCCCTACTTCCCA… hypothetical protein
2964_slr0655-sacB ATGCCCCAACCCATTACCCCCCAAC… DUF427 domain-containing protein
2774_ssr1176-sacB ATGGTTTTTACCGGGAGTTTGAATG… transposase
2648_sll0590-sacB ATGAAAAGAATTGGTCACATGTTGG… mechanosensitive ion channel family protein
2522_slr0572-sacB GTGGATATTTTGGCACAACTTTTGT… hypothetical protein
2396_sll0606-sacB GTGTTTGGTCGGTTGCCCTTAAGTG… hypothetical protein
2460_slr0204-sacB ATGGGGACATTTACCTATGAAAGGC… 1%2C4-dihydroxy-2-naphthoyl-CoA hydrolase
2271_sll0191-sacB ATGAACAGGGGAGCAAAAGTAAAGA… hydroxylase
2335_slr0468-sacB ATGGCACTCCCGAGCAAATTCAATC… hypothetical protein
2145_slr0771-sacB ATGGCAAACAGGATTAAATTTCATC… hypothetical protein
2209_sll0024-sacB GTGAAAATTACTTGTTTAAAACATA… hypothetical protein
2019_sll1853-sacB ATGGCGATGGAAGTGCAACTATTGT… DUF3750 domain-containing protein
2083_sll0177-sacB ATGCGTATTGTTGCCTACGTTTATT… recombinase family protein, metal-sensing transcriptional repressor
1893_slr0442-sacB ATGAATACTCGCTTTTTCCTCAATT… hypothetical protein
1767_sll1089-sacB ATGAAGTACTCACTATTTGTCGCTA… hypothetical protein
1831_slr0948-sacB ATGAGTGCAGATCCCAATCGTATTG… cofactor assembly of complex C subunit B
1515_ssl2420-sacB ATGAATACCCAATTAGTAGAATCCT… hypothetical protein
1579_slr1342-sacB ATGGCTGACCCCACCAAAATCATTG… four-carbon acid sugar kinase family protein
1389_slr2079-sacB ATGGGGATTGGCGTAAACTCAGATC… glutaminase
0027_slr1484-sacB ATGTCAATCTCTAATTTCTGCCTGA… TonB family protein
1137_sll2008-sacB ATGGATATACGCCTTGTGTCTGTGC… insulinase family protein
0091_slr0722-sacB ATGTTGGCCAAAGCGTTTGCGGGGT… 16S rRNA (uracil(1498)-N(3))-methyltransferase
1011_sll1268-sacB GTGAACACTGACCTTTGTAGGGATC… hypothetical protein
1075_slr1859-sacB ATGGCTTTCAACATCGAATCGGAAA… STAS domain-containing protein
0823_slr2070-sacB GTGCTAAATGTCCGGAGACTCCACC… DUF1868 domain-containing protein
0633_slr1394-sacB ATGCAAGATTTTGGCGCAGTGTTCC… divergent PAP2 family protein
0507_slr1851-sacB ATGAAAACTATGGATGCCCAGGAAA… pentapeptide repeat-containing protein
0571_sll0998-sacB ATGTCGGATATCCCGTTCACGCTGG… LysR transcriptional regulator
0445_sll1500-sacB ATGTTGACAGTTTATACCCAGTCTG… TIGR00303 family protein
0319_slr0978-sacB GTGCTATTGATTACGATCGCCTTTT… hypothetical protein
0129_slr0244-sacB ATGCTTAGCAAAATTTTATACGCAG… universal stress protein
0193_sll1033-sacB ATGCTGATCTGTCTCCAGTGCTCCG… serine/threonine phosphatase
3499_slr6044-sacB ATGAAGTTCTCAATCCCCACCAATC… hypothetical protein
3563_slr6108-sacB ATGCTTGACTTCTCAGCAATTTCTG… hypothetical protein
3437_ssl5114-sacB ATGGCAACCGTTACTGATACAGACC… hypothetical protein
3247_ssr7079-sacB ATGCAACGCAGAAGTACCCAAAGCC… No conserved domains
3311_slr8037-sacB GTGTTTCGATGGTTTATCGCTGCGA… GNAT family N-acetyltransferase
3121_slr1183-sacB ATGTGGGATGAAAGATTTAGCCAGT… class I SAM-dependent methyltransferase
2995_slr1566-sacB ATGGTCACCTTTGTCTTGGCAATTA… glycosyltransferase
3059_slr1652-sacB ATGGGCATTGAGCAAAATAATCCTA… phytol kinase
2869_sll0499-sacB ATGGATGGGGAAGGTAATAAGTTGG… tetratricopeptide repeat protein
2933_sll1334-sacB ATGTTTGTCAATCAACATGGTTACA… GAF domain-containing sensor histidine kinase
2743_slr0800-sacB GTGAAAGGACGAAAGTGTCACCTAA… transposase
2617_slr0510-sacB GTGATTGCACAAATTAATCCACCAC… mechanosensitive ion channel
2681_slr0111-sacB ATGGCCAGAAAAAGCTTATCGGATC… hypothetical protein
2491_slr0907-sacB ATGGTCGAATTAACTGAAAATCACT… FkbM family methyltransferase
2365_sll0688-sacB ATGGAATCCCTAAACCCGATCTCCC… hypothetical protein
2113_slr0360-codA/sacB ATGAGTGCTACGGCGATCGCCCCCC… NCS2 family permease
1987_sll0141-sacB ATGAACAAGTACATCCCCCACCAAC… efflux RND transporter periplasmic adaptor subunit
2051_slr0320-sacB ATGATCGATCGCCTTTTGTACGTTC… B12-binding domain-containing radical SAM protein
1861_slr1628-sacB ATGGCTACTCTCCAGGATTCCCGGG… DUF2237 family protein
1925_sll0263-sacB ATGATCGAAGCCTTTCTGTTGCCCG… hypothetical protein
1799_ssl3044-sacB GTGACCATTACCTTTGTTAAAGAGC… hydrogenase component
1673_sll1380-sacB ATGACCACCGCAACCCATTTGCTGA… GUN4 domain-containing protein
1547_slr0816-sacB ATGGTTATACAGCCCATTTACTTAC… DUF177 domain-containing protein
1611_slr1964-sacB GTGGGCTTCTCGTTGCAGAGCAGGC… hypothetical protein
1485_slr2126-sacB ATGTTTTTCATGCAAAATACTAAGT… glycosyltransferase family 2 protein
1295_sll1949-sacB ATGAAGAAGCGATCTCTGTTCTCCC… hypothetical protein
1359_ssl0467-sacB ATGAGCACCCAAGATAAAGCCCGTG… hypothetical protein
0059_sll1062-sacB ATGTCTAAATTTAGCAAATTACTAG… hypothetical protein
1169_slr1815-sacB ATGACTCAAACTGAGATTATTAAGT… methyltransferase domain-containing protein
1107_sll1765-sacB GTGATAGTCTCCCTGGCAATTGTTG… hypothetical protein
0791_sll1123-sacB GTGCTATTTTTGTGCAACTTGCTTT… hypothetical protein
0855_sll1734-sacB ATGACTACCCTGACCCCAAAAGCTA… CO2 hydration protein
0665_sll1571-sacB ATGTCTAACCAACCTTCCCCCGGTG… hypothetical protein
0729_slr1150-sacB ATGGATATGAAATTTTTCATCCTTT… hypothetical protein
0603_slr1039-sacB ATGTTGGAAAGAATTCTGGAGCCAG… class I SAM-dependent methyltransferase
0287_slr1307-sacB ATGACCTACACAACCCAGCAATTGC… hypothetical protein
0351_slr1077-sacB ATGAGAATTTCACACATAATTGCAG… glycosyltransferase
0225_slr1788-sacB ATGGTTAGAGCTATACGTCCTCCCA… hypothetical protein
3531_sll6076-sacB ATGTTCGATAATCTGTGCAAATTTC… Rpn family recombination-promoting nuclease/putative transposase
3405_slr5082-sacB ATGTTTGACAATCTGTGCAAATTTC… Rpn family recombination-promoting nuclease/putative transposase
3469_slr6014-sacB ATGAGTTTACCAACTGAATTGATTG… hypothetical protein
3279_ssl8005-sacB ATGAAACGCCAATCTGTCCTGCAAT… DNA polymerase subunit beta
3343_ssr5020-sacB GTGATTCGTAACTTTAAAGATAAAG… hypothetical protein
3153_sll0564-sacB ATGCCTAGACAGGTTTGGATTTTTC… class I SAM-dependent methyltransferase
3217_slr7049-sacB ATGCTCATTGGTTATATGAGGGTTT… resolvase
3027_slr1586-sacB ATGCAAAAAGACTTGATAGCGCCGA… transposase
3091_sll0445-sacB ATGCAAAAAATTTATGCCATCGGTG… hypothetical protein
2965_slr0656-sacB ATGGCCAAGTCCCATTCTTCTGGTT… GNAT family N-acetyltransferase
2775_sll0672-sacB ATGAAAGCTTGTTGCTATTTTTTCA… cation-transporting ATPase; E1-E2 ATPase
2523_sll0543-sacB ATGTTTAGTTTGAAAAATTATTCCC… DUF2752 domain-containing protein
2524_ssl1046-sacB ATGACAAATCAGTATGTACCAAATT… CD225/dispanin family protein
2462_slr0207-sacB ATGAATAACCTTACTGATCAGCTTG… hypothetical protein
2210_sll0023-sacB ATGCAACCGATAAAAATTAGTCGTC… glutathionylspermidine synthase preATP-grasp family protein
2084_sll0176-codA ATGACGGCTATGTGTGGTTTTGGAT… DNA-binding transcriptional regulator, FrmR family
1894_sll0428-sacB ATGATTATTGAAGAGATTGTCAATA… type II toxin-antitoxin system VapC family toxin, BrnT family toxin
1958_slr0404-sacB ATGCTTAAGATGCTCAAGAATTTAC… DUF1517 domain-containing protein
1768_sll1087-sacB ATGGGCATGATTGACTGGGCCATTG… sodium-coupled permease
1832_sll0913-sacB GTGAGAATAGTTACTATGCTTGCCT… Uma2 family endonuclease
1580_slr1343-sacB ATGACCATTGGCATTTGGATATTGG… cryptochrome/photolyase family protein
1390_ssr3532-sacB ATGGTTACAACTTTTAGCAAACCAT… hypothetical protein
1454_slr1520-sacB ATGCGGGGCTTAGGCAATCGCCAGC… aldo/keto reductase
1328_sll1606-sacB ATGTTCGTTTTTCTCTCCAAACTTT… YdcF family protein
0028_slr1485-sacB ATGTTTAAATTTGCTCAAATTATTT… hypothetical protein
0092_slr0723-sacB ATGTATAAAGCCATTGCCGATGCCA… hypothetical protein
1202_slr1740-sacB GTGTTGCTAAATCTTCCCGCCACCG… peptide ABC transporter substrate-binding protein
1012_sll1267-sacB GTGGGGCAAATTTCAACTTTTACGG… hypothetical protein
0886_slr1540-sacB ATGCGCATTTTAATTATGGGAGGAA… NAD-dependent epimerase/dehydratase family protein
0950_sll1130-sacB ATGAATACAATTTACGAACAATTTG… type II toxin-antitoxin system PemK/MazF family toxin
0824_slr2071-sacB ATGTTTAAATTCCTTGCCAATAATT… hypothetical protein
0634_sll1286-codA GTGAGGCGATCGGGATTTTTCCCGC… TetR/AcrR family transcriptional regulator
0698_slr2027-sacB ATGGCGATGAGTAAGCCTAACTTAA… glycosyltransferase family 39 protein
0508_ssr3129-sacB ATGTGTTTTTTTATTATCCAAGAGG… hypothetical protein
0572_ssl1911-sacB ATGTCTACTCAACAACAGGCTCGCG… hypothetical protein
0446_slr1609-sacB GTGGACAGTGGCCATGGCGCTCAAT… long-chain-fatty-acid CoA ligase
0256_sll1652-sacB ATGTTAAACACTCTCTCCAAGAAGA… Predicted DNA binding protein, CopG/RHH family
0320_slr0980-sacB ATGGAGCAACTTTACGAAAGAGATT… DUF29 domain-containing protein
3500_slr6045-sacB ATGCTCTTAACCAGTATGGATCAAA… hypothetical protein
3564_sll6109-sacB ATGAAAATTAACCGTCAGGGGCAGG… site-specific integrase
3374_slr5051-sacB ATGCCAACAGTTGAAACTGACTTGG… hypothetical protein
3438_slr5115-sacB ATGTTGCAGATAACTAAAAGCCTCA… aminoacyl-tRNA hydrolase
3248_slr7080-sacB ATGGTTAGTTATCATTTGCACCTGA… hypothetical protein
3312_slr8038-sacB ATGCCGTTTGAAGATGCCCTTGCGA… WD-repeat protein
3122_slr1184-sacB ATGGCATCAATTGTTTTCCGCTACC… rhodanese-like domain-containing protein
3186_ssr7018-sacB GTGAGGGGGCCAGATCCCTGCCAGA… No conserved domains
2996_sll1491-sacB ATGAACAACTATTTCCCTCGATTGA… beta transducin-like protein