Plasmids and Cultures

This database contains entries for 3,572 known and predicted gene coding sequences in Synechocystis sp PCC 6803 based on the Kazusa genome sequence and nomenclature (http://genome.microbedb.jp/cyanobase/GCA_000009725.1). Plasmids for generating marked mutants and mutant strains can be searched for by gene Name/Accession (e.g. 'sll1226' or '1513_sll1226-sacB'),  gene homology (e.g. 'hydrogenase large subunit'), Gene ID (e.g. hoxH), or by a portion of the gene coding sequence Sequence (CDS).

Please note, the library is still being completed. Plasmids and/or marked mutants may not be available. Users can also search for available materials by Plasmids made or Mutant made.

Plasmids, mutants and the unmarking spacer plasmid pUC19K-UL are currently available on request. Regardless of the segregation status of the mutant, open reception of a cyanobacterial mutant strain we recommend 1-2 cycles of restreaking on a selection plate containing kanamycin (100 μg/ml).

Name CDS Gene Homology Gene ID Sort descending
3545_slr6090-sacB ATGAAGCATTATAAAACTTCACACG… hypothetical protein
3355_sll5032-sacB ATGAACTCAGAAAATCTCGCGGCTC… DUF4079 domain-containing protein
3419_ssl5096-sacB ATGATGACTAATTTTATTGATCTTG… hypothetical protein
3229_slr7061-sacB ATGAAAATCATCTCTTTTCTCGGTT… TIGR02221 family CRISPR-associated protein
3293_sll8019-sacB GTGCTAACGACCAAGCATCTGCCCC… hypothetical protein
3103_slr0456-sacB ATGGAAGATTGGGAGAAAAACCTCT… hypothetical protein
3167_slr0610-sacB GTGGGCAGTGTGGTGAATCTAGGGG… ABC transporter permease
2977_ssr1114-sacB ATGATGAGAGCTTTTGAGGTAATGG… hypothetical protein
0023_sll1407-sacB ATGAAAAAAAATGTTTACTACAGCA… SAM-dependent methyltransferase
0087_sll0711-sacB ATGCATTCCTACACCCTCCATGCCC… 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase
2789_slr0712-sacB ATGACCGCCTGGCAAAAGATACAAA… UPF0104 family protein
2537_sll0539-sacB ATGATGGAACTCAATTTTTTCCTTC… DUF4105 domain-containing protein
2601_slr0498-sacB ATGTTTGGCAAATATCGACAGAAAA… two pore domain potassium channel family protein
2411_slr0416-sacB ATGGAAGAATTGTTAGAACTGAAAA… DUF29 family protein
2475_sll0887-sacB ATGCTCGATATTCAGGCGATCGCCG… TldD/PmbA family protein
2159_sll0762-sacB ATGGTACTGAAACTGAAACGGGGGA… No conserved domains found in itself, however some matches have a DUF4340 domain
2097_sll0162-codA ATGGGCTTGTTTGACGATGTCGGCC… TIGR04376 family protein
1971_slr0147-sacB ATGGCTCGAAGGTATGGTTCAAGCC… hypothetical protein
1781_slr1677-sacB GTGACCACCTGGGTTCGTCCTGTTG… hypothetical protein
1845_slr0957-sacB ATGACAGCAAACAAATCCCATTACC… DUF1816 domain-containing protein
1655_ssl2717-sacB ATGGAAAAAATTTGGGTCAATGAAC… hypothetical protein
1719_sll1446-sacB ATGGAAACTGAGCAACTTCTTTGGC… hypothetical protein
1403_sll1983-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
1467_sll1998-sacB ATGGCTTACAGTTTAGATTTGAGGC… transposase
1277_slr1261-sacB ATGGCTAGCTCAACCCAAACCAATG… DUF2892 domain-containing protein
1151_sll1710-sacB ATGATAATTCGAGAATTTTACAGCA… transposase
1089_slr1870-sacB ATGCCGCAATCGGAATCAAACATTG… NYN domain-containing protein
0647_ssr2843-sacB ATGGCCCGCAAGCAAAAATTTCCCC… Cyanobacterial Signature Protein
0521_slr2037-sacB GTGCGATTCAACGATTCTGAGCTTC… hypothetical protein
0585_sll0992-sacB ATGGAACGATTAGAACACCACGCCA… esterase
0459_slr1052-sacB ATGGGATCCGAGTATCAAGGCCAAT… tetratricopeptide repeat protein
0333_slr1617-sacB ATGAAAATACGTTGGATTACACCAC… NAD(P)-dependent oxidoreductase
0207_slr1776-sacB GTGATTAAACAAATATTTCCCATTT… high affinity sulfate transporter
3513_slr6058-sacB ATGAGACGTTATCGTTATCGATCGC… CAP domain-containing protein
3387_ssl5064-sacB ATGAAAGATAACCGGTATTCTCCTG… HNH endonuclease
3451_sll5128-sacB ATGACGACTCAATCTCTCACTGCTG… hypothetical protein
3325_sll5002-sacB ATGCCTGACATTCAAACTTGGGAAT… hypothetical protein
3135_sll0577-sacB ATGCTGAAAGTGTTTCGTCAGTCCT… pentapeptide repeat-containing protein
3199_sll7031-sacB ATGACCCAGATCACCAAGTCCAAAG… DUF1778 domain-containing protein
3009_slr1579-sacB GTGAAACCCCGTTCTTTTTTCGTTC… DUF3352 domain-containing protein
2883_slr0929-sacB ATGATTATTGCCATCACTGCCCTCA… ParA family protein
0055_sll1064-sacB ATGATTGTCACTAGTTTGTTATTAA… metallophosphoesterase family protein
0119_slr0236-sacB ATGTTGTTGCTCCAATTCAGCACTT… glutathione S-transferase family protein
2821_sll0038-sacB ATGACAGCTCCCACCCCCTCCTCCC… response regulator PatA subfamily
2443_slr0192-sacB ATGACTTCCATGCCCATCGAAATTT… hypothetical protein
2317_slr0058-sacB ATGGTTTTTGCTATGGTTGACGAGA… hypothetical protein
2127_slr0374-codA ATGCAAGAAGAGCTGAGTGTACTGC… cell division cycle protein
2191_slr0348-sacB ATGGATACCAAAGCTTTTAAACGGT… 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
2065_sll0297-codA ATGAAGCCCCCCACTTACAACGCAC… NYN domain-containing protein
1875_sll1528-sacB ATGAAGGTATTAATCACAGATTTTG… glycosyltransferase
1749_slr1160-sacB ATGCTTCAACGTCTTGTGCACATAT… Cyanobacterial Signature Protein
1497_slr1324-sacB GTGGAAGTAGAATACAGTGGAGTGT… hybrid sensory kinase
1435_slr1506-sacB ATGGAGAAAAAAATAACTTTACGTT… alpha/beta hydrolase
1245_sll1164-sacB ATGAAACATGTTTTTTCTGGCTTTC… EamA family transporter
1309_slr1999-sacB ATGAAGGTTAAAGTAATCCTCAAAA… type II toxin-antitoxin system HicA family toxin
1119_sll1757-sacB ATGGGGGGAAAGTGCTTAGCTAAGA… hypothetical protein
0993_slr1357-sacB ATGGCTTACAGTTTAGATTTGAGGC… transposase
1057_sll1308-sacB ATGCCCATGGCCATCGATATTAGCA… SDR family oxidoreductase
0679_ssr3410-sacB ATGATCACCACCATCATTAACTGGC… hypothetical protein
0617_ssr2318-sacB ATGAAGAGTTACCGGCGCTTGAAAC… hypothetical protein
0301_slr0971-sacB ATGAAGCTGGTGAAGGATGTACAAC… DUF4335 domain-containing protein
0365_sll1024-sacB GTGCTAGTGTGTATGGCCTTTTCCC… hypothetical protein
0175_sll1039-sacB GTGGGAGCTTTAGGGCGGACTAGGT… alpha-E domain-containing protein
3482_ssr6027-sacB ATGTATTTTGACCGTTTCGACATTG… hypothetical protein
3546_slr6091-sacB ATGGAAAACTTCGACACCTCGACCT… hypothetical protein
3356_sll5033-sacB ATGAAAAGCATCTTAAGTTTTATCA… DUF3122 domain-containing protein
3420_sll5097-sacB ATGACGGCTCAAAATGTACTTTCCC… WYL domain-containing protein
3230_sll7062-sacB ATGCCTAACGTTATTGTTTCCCCTT… hypothetical protein
3294_sll8020-sacB ATGAGCCTCCCCGACAATGTCACCA… Crp/Fnr family transcriptional regulator
3168_sll7106-sacB exodeoxyribonuclease V alpha chain
2978_slr0664-sacB ATGTCGAATAATCTCCATTTAGTCA… type II toxin-antitoxin system RelE/ParE family toxin
3042_ssl1378-sacB ATGAGTAATCCTGAAGGTTATAACG… hypothetical protein
0088_sll0710-sacB ATGTGGAACTTTTCGCAACTTAATC… hypothetical protein
2538_slr0583-sacB ATGAAAATTTTGGTCACCGGCGGCA… GDP-L-fucose synthase
2602_sll0489-sacB ATGATTGAGGTTGAACATCTCAGCA… ABC transporter ATP-binding protein
2476_sll0886-sacB ATGCTTTCCCTTCTACGAAAATATT… tetratricopeptide repeat protein
2286_sll0406-sacB ATGAGTATTATTTGTCTTGATACAA… PIN domain-containing protein
2350_slr0487-sacB ATGGAGTTTAAAAATTTTTTCGATG… PAS domain-containing protein
2160_sll0761-sacB ATGACCATGAAGACAGCCCAAATAA… hypothetical protein
2034_slr1944-sacB ATGATTGACTTCAAACGTTTGTTAG… alpha/beta hydrolase
2098_slr0179-sacB ATGAATATTGAAGCTAAGCTAAGTC… hypothetical protein
1908_sll0419-sacB ATGTACTTTCTGCTTGTAACTCTGG… hypothetical protein
1972_slr0148-codA ATGACCATGCCACCATTATGGAATT… ferredoxin
1656_sll1389-sacB ATGACGGATTTACCCCATTCCCCGG… hypothetical protein
1404_sll1982-sacB GTGGGTAGGATAGAATGGAGGAAAA… transposase
1468_sll1997-sacB ATGATATCAAATTTTGGACATATTG… transposase
1278_slr1262-sacB ATGGCACTCCAAGTGGTGGGCTATT… sulfite exporter TauE/SafE family protein
1342_ssr2898-sacB ATGCTCAGAACGGGGTGTGCCTGGC… transposase
1026_slr0881-sacB ATGTTGGCCCTAATTTTGGCGATCG… hypothetical protein
1090_sll1773-sacB ATGATCACACTCCGCCCCTCCGAAG… pirin family protein
0964_slr1436-sacB ATGGATAATGTTACTCGCTATCAAA… class I SAM-dependent methyltransferase
0774_slr1895-sacB ATGCCAAGCAAGGGAAGGGGAAACG… metallophosphoesterase
0648_slr1702-sacB ATGTCCCTCCCCGTTCCCTCCACCA… DUF1995 family protein
0522_slr2038-sacB ATGCCTATTACAGAATTAGCCCCCG… Uma2 family endonuclease
0586_sll0990-sacB ATGAAATCCCGTGCCGCCGTTGCCT… formaldehyde dehydrogenase (glutathione)
0460_slr1053-sacB ATGGAATGGTTCGCCATTGCCCTGT… DUF2993 domain-containing protein
0270_sll1193-sacB ATGGCTAAGGTTTTAGTCCTCAACG… HNH endonuclease
0334_slr1618-sacB ATGCACCTAAAAACAGAAAAAGAAC… class I SAM-dependent methyltransferase
3514_sll6059-sacB ATGAAAATTAACCGTCAGGGGCAGG… site-specific integrase
3388_ssl5065-sacB ATGGGACGGCTCAGTAAGGTGTTTG… hypothetical protein
3452_ssl5129-sacB ATGACAGGATTATGGTTGCATATGA… hypothetical protein
3262_slr7094-sacB ATGAATAGTATTTTCACCATTAACC… hypothetical protein
3326_sll5003-sacB GTGATCGAGCTTACCAACCCCTTTA… hypothetical protein
3136_slr0588-sacB ATGATCAGGGATGTCTTTTATCTTC… hypothetical protein
3200_slr7032-sacB ATGAATCGTGATCTGGCCTCAATTT… DUF86 domain-containing protein
3010_sll1486-sacB ATGCATCCAAATCTTCCTTGGCTCC… DUF2231 domain-containing protein
3074_slr1664-sacB ATGGACTATTTTTTAGTTTGTGGGT… hypothetical protein
2884_slr0930-sacB ATGACGGTTCCCTACCCTACTCCCC… ATP-binding protein
2758_sll0775-sacB ATGAAAATTATCTTCAGTCCCAAAA… DUF4189 domain-containing protein
2822_slr0031-sacB ATGCTCCCTACTCTCCCCCATCTGC… M61 family peptidase
2632_slr0521-sacB ATGGCCTGGCCATGTTTATCAGTTA… hypothetical protein
2506_slr0923-sacB GTGACTACAGCCGAAGCAGCATCTA… 30S ribosomal protein PSRP-3
2570_slr0848-sacB ATGACCCGCCGAGAGAGTGCCAATC… DivIVA domain-containing protein
2380_sll0615-sacB ATGCTGACCGCTTTTACTGCCGGAT… transmembrane protein FT27
2444_slr0193-sacB ATGTCCATTCGTCTCTACGTCGGTA… RNA-binding protein
2254_slr0222-codA ATGCCTATCATTCCTAGCCCCAAAG… hybrid sensory kinase
2318_slr0059-sacB ATGTTGCTGTTCGTTATCTGTTTTA… hypothetical protein
2128_slr0376-sacB ATGTCTCATTTCAGCACTCTCCGTA… Cyanobacterial Signature Protein
2192_sll0318-sacB ATGAACCGCCAGGGAACCTATCAAG… DUF3318 domain-containing protein
2002_sll1864-sacB ATGGCTTGGTTTCCCTTTTGGCAAC… chloride channel protein
2066_sll0296-codA ATGGTTACTACTCCAGTAAAGACAC… unidentified open reading frame
1876_sll1527-sacB ATGAAAAAATTTGTTGTTATTGACC… glycosyltransferase
1814_sll0921-sacB ATGGAGAAAATTCGCATTGCCTTAA… NarL subfamily
1624_ssl3549-sacB ATGAATGACAATACCACCGCCTCGC… hypothetical protein
1498_ssr2194-sacB ATGTTTGCCTCCACCAACTACACCT… hypothetical protein
1562_sll0804-sacB ATGAATTCCCCTGCCCCTGATCCGG… DUF697 domain-containing protein
1246_sll1163-sacB GTGATTCCGTCGGTAAAACCTGTCC… cupin domain-containing protein
1310_slr2000-sacB ATGGCTCAAAAATCTTCGTCGTTTT… S-layer homology domain-containing protein
1120_ssr3188-sacB ATGAGCCTCCCCGCACCGGAAACTC… DUF3143 domain-containing protein
1058_slr1406-sacB GTGAAAGTGAGCAAACGTTTTTTCC… heme-binding protein
0932_sll1138-sacB ATGTTAAAGGCAGTATTGTTAGACT… HAD family phosphatase
0806_slr1203-sacB ATGACAACACTGTATGAAACGGACT… DUF29 domain-containing protein
0680_slr2011-sacB GTGCCACCGGGGAGAAGCGCACTAA… DUF4040 domain-containing protein
0554_slr1911-sacB ATGTTTTCCCCCGACCCCATACTTC… hypothetical protein
0428_slr1601-sacB ATGACTGCCCAAACTTTCAAACCCA… hypothetical protein
0492_slr1768-sacB ATGGGTGCTGTTATCTCGGCGATCG… prohibitin family protein
0176_slr1095-sacB ATGACCGCCGCCCTCGACCAAATCA… Uma2 family endonuclease
3483_slr6028-sacB ATGACAACCACCACTAAAACCACCG… siphovirus Gp157 family protein
3547_ssl6092-sacB GTGAAATTTATGGCTAAGGAAAAAA… hypothetical protein
3357_sll5034-sacB ATGCAAACTTTACCACAACGGATTT… DUF3365 domain-containing protein
3421_ssl5098-sacB ATGAAAAGTCGGCGATTATCTATCC… hypothetical protein
3231_sll7063-sacB ATGACAGTCGGAACATTGGGCGTTG… TIGR03986 family CRISPR-associated RAMP protein
3295_slr8021-sacB ATGACGGTCACTCCACTCAATCTTA… class I SAM-dependent methyltransferase
3105_slr0458-sacB ATGGCTAACGAAAAAATTATTGTTT… 2-phosphoglycolate phosphatase
3169_sll7001-sacB GTGATGTGTGCATATTGTATGATTT… transposase
3043_sll0729-sacB ATGGAGGAAACCGGGGAAATAAATA… DNA adenine methylase
0025_sll1405-sacB ATGACCAACCGGAGGAAAAAGAGTA… biopolymer transporter ExbD
2665_slr0103-sacB ATGGCCCTTTCTCCCCTCTCCCGCT… hypothetical protein
2539_slr0825-sacB GTGATTTCCATGACCACTAAACAGA… S9 family peptidase
2413_slr0418-sacB ATGGCCCCCCAACCTACCGCAACCA… TIGR04168 family protein
2477_slr0895-sacB ATGGTTTCTGGAAAAAGGCTTCGTT… TetR/AcrR family transcriptional regulator
2287_sll0405-sacB ATGACCCAAAGCTATGGAGATACCA… PQ-loop repeat-containing protein
2351_slr0488-sacB GTGTCTCCGTCTGGTAAATCGTCCC… murein biosynthesis integral membrane protein MurJ
2225_slr0013-sacB ATGAAGCTCATCGATTCCCGTGGCA… flavin reductase family protein
2099_slr0180-sacB ATGATATCAAATTTTGGACATATTG… transposase
1909_sll0418-sacB ATGCCCGAGTATTTGCTTCTGCCCG… sterol-C-methyltransferase
1973_slr0149-sacB ATGTTTAAGCCGTTGACTCGTCTCA… hypothetical protein
1657_sll1388-sacB ATGGGCTACGGAAAGATTTTAGTTG… universal stress protein
1405_slr2092-sacB ATGGCTAGGTCTTTGGGCAGAACGC… Uma2 family endonuclease
1469_slr2110-sacB ATGACTGACTATCAAGGTTATTTAG… sugar phosphate isomerase/epimerase
1279_slr1263-sacB ATGCTTTCCCTGCTCACACCTCTAG… DUF3370 domain-containing protein
1343_sll1596-sacB ATGGAAAATTTAAACGCTCTATCTG… KaiB-like protein 1
1153_ssl3291-sacB ATGGCCAAAGCAATCTGGAATGGGG… DUF427 domain-containing protein
1217_sll0854-sacB ATGGCATTTTTTAAAGAAGACCCGG… Cyanobacterial Signature Protein
1027_sll0872-sacB ATGGCTGGGGGCATTTTAAAGACTG… hypothetical protein
1091_slr1871-sacB ATGGACAAACTTGAAAGTATTTACG… transcriptional regulator
0901_sll1461-sacB ATGGTTATCGCCCCCCATCGCACTA… Uma2 family endonuclease
0965_slr1437-sacB ATGTCCGCTGAATTTTTTGACTGCC… hypothetical protein
0775_slr1896-sacB ATGGCTGAAGTTATCCCCAACAATC… DUF1823 family protein
0523_sll1942-sacB ATGGGCAACATCTTTTTTCCGTGGG… hypothetical protein
0587_slr1028-codA ATGAGTATAACTTTATCTGATCGCC… DUF4114 domain-containing protein
0397_sll0641-sacB ATGGCCAAACTAAATCTTGCCCATC… hypothetical protein
0271_slr1299-sacB ATGCGTGTTTGTGTTATCGGAACGG… UDP-glucose dehydrogenase
0335_slr1619-sacB GTGAATCCATTAGACTCTTTTAAAT… cephalosporin hydroxylase
0145_sgl0002-sacB GTGGAAGCAACTCCTACTCCTGTCC… hypothetical protein
3515_sll6060-sacB ATGACAGGACAAGAAATTTTGATAA… N-acetyltransferase
3389_sll5066-sacB ATGAAGATAATCGCCGTGACTGGCT… ParA family protein
3453_sll5130-sacB GTGCGATTCAACGATTCTGAGATTG… HNH endonuclease
3263_slr7095-sacB ATGACATCTGTTTTTCACGTTCTAA… adenylyl-sulfate kinase
3327_sll5004-sacB GTGAATATGTTAGGTCGCCACTCTG… DUF433 conserved domains
3137_slr0589-sacB ATGGATGTTATGGATTTACCTGTTC… cofactor assembly of complex C subunit B
3201_sll7033-sacB ATGAGTCGATTGTACGGTGACGAAA… hypothetical protein
3011_sll1485-sacB ATGTTCACCCTCAATGACCAAAATC… DUF2231 domain-containing protein
2885_ssr1558-sacB ATGGATTGGCAACTGTTTGGTCTAA… TMEM165/GDT1 family protein
2949_sll1366-sacB ATGGCGACTATCCACGGTAATTGGC… helicase of the snf2/rad54 family
0121_slr0238-sacB ATGAGATTAATTAAACAAATTGTGG… hypothetical protein
2633_slr0522-sacB ATGAAGACTTCTATTTTATCTGCAT… hypothetical protein
2697_slr0299-sacB ATGGAAATTCCCGTCCGCTATCAAC… hypothetical protein
2507_slr0924-sacB ATGCCTTGGCTACAAACCTTTTCTT… hypothetical protein
2381_sll0614-sacB ATGTTTGATCCAACGGCAATTATTG… DUF4253 domain-containing protein
2319_slr0060-sacB ATGAAACCCAAAGTGGCGATCGCCT… patatin-like phospholipase family protein
2129_slr0377-codA ATGTCTATTCCCCCTAGTGCTCTGG… hypothetical protein
2003_slr1926-sacB GTGTCGAGAGCGCAACCATTGTTGC… hypothetical protein
2067_ssl0564-sacB ATGCTGGCCGGGAACTATCAACCCC… response regulator like protein
1877_sll1526-sacB ATGACTTGGAATGAGGGCTACGTCC… methyltransferase domain-containing protein
1941_slr0294-sacB ATGACGAAGAAAGAGGCTCTTACCT… hypothetical protein
1751_sll1094-sacB ATGATATTTGAAGGATACTGCAACG… transposase
1625_slr1972-sacB ATGTTAGACGCCGTCATTATTCTCC… PIN/TRAM domain-containing protein
1689_sll1178-sacB GTGACTCATATTCTTGGCATTTCTG… nodulation protein
1499_sll1236-sacB ATGTCGTCTACGCTACCACTCGATT… hypothetical protein