Plasmids and Cultures

This database contains entries for 3,572 known and predicted gene coding sequences in Synechocystis sp PCC 6803 based on the Kazusa genome sequence and nomenclature (http://genome.microbedb.jp/cyanobase/GCA_000009725.1). Plasmids for generating marked mutants and mutant strains can be searched for by gene Name/Accession (e.g. 'sll1226' or '1513_sll1226-sacB'),  gene homology (e.g. 'hydrogenase large subunit'), Gene ID (e.g. hoxH), or by a portion of the gene coding sequence Sequence (CDS).

Please note, the library is still being completed. Plasmids and/or marked mutants may not be available. Users can also search for available materials by Plasmids made or Mutant made.

Plasmids, mutants and the unmarking spacer plasmid pUC19K-UL are currently available on request. Regardless of the segregation status of the mutant, open reception of a cyanobacterial mutant strain we recommend 1-2 cycles of restreaking on a selection plate containing kanamycin (100 μg/ml).

Name CDS Gene Homology Gene ID Sort descending
1870_slr1636-sacB GTGATGAATTTGCTTTGCTATAGGA… Predicted metal-dependent hydrolase domain (super family DUF309)
1682_sll1371-sacB ATGGGCACTAGTCCCCAAAATTCAG… catabolite gene activator protein
1492_sll1241-sacB ATGGGTATTACATCAAAAATATTTG… hypothetical protein
1556_ssl1507-sacB ATGAATAACGCCCCCATTCATCGAA… transposase
1178_slr1819-sacB ATGGAAGCCAAGGAATTGGTCCAAC… hypothetical protein
1116_ssr3184-sacB ATGCCCCATACCATTGTTACGGAAA… ferredoxin
0926_slr1222-sacB ATGATTGGACAGGTAGTTAGGCTTG… hypothetical protein
0800_ssr2009-sacB ATGCTACCACCTCTAAAAAATCCAA… DUF2442 domain-containing protein
0738_sll1825-sacB GTGCCAGACTGGACTAAAAATAATC… aklaviketone reductase
0612_ssr2315-sacB ATGTTTAAACCCAGCTTACTTTTGT… hypothetical protein
0422_sll1511-sacB ATGACGCTGTTAAGTAAACTCCTAG… hypothetical protein
0296_sll0939-sacB ATGGAAATTTTGGATCATTATCTGG… DUF1622 domain-containing protein
0360_slr1084-sacB ATGCAACTTAATCAATACCAGCAAG… hypothetical protein
3476_slr6021-sacB ATGTTTAAAAAATTAGGTGAAGTAG… hypothetical protein
3540_ssr6085-sacB ATGCACCACGACACCAAAGAAGCGA… hypothetical protein
3350_ssl5027-sacB ATGAAGAATAATCGTTATTCTCCTG… HNH endonuclease
3414_ssl5091-sacB ATGGACTTTAACCCCAATGAGTGGC… hypothetical protein
3288_slr8014-sacB GTGAAAGTACTTCTCGACACCAATA… PIN domain-containing protein
3162_slr0605-sacB ATGGGCTTACTCGTCAACGGCATTT… glutathione S-transferase family protein
3100_sll0436-sacB GTGATCTTTGAGCAAGGCATTGAAA… SRPBCC family protein
2910_ssl1004-sacB ATGATCGGAGTTAGCGTTAATCCAG… type II toxin-antitoxin system Phd/YefM family antitoxin
2974_sll0623-sacB ATGGTGGTCGAGAAGCTATTGATTG… hypothetical protein
2784_sll0665-sacB ATGATAATCCGAGAATTTTACAGCA… transposase
2658_slr0624-sacB ATGCCTGTATCTCCCCTATCGGTTT… UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)
2596_slr0091-sacB ATGAATACTGCTAAAACTGTTGTTG… aldehyde dehydrogenase
2406_sll0397-sacB ATGGAACTAATCATTTCCTGGCTAC… DUF1361 domain-containing protein
2280_sll0410-codA GTGAGTGATTCCCCCAAGCCCCAAT… acyl-CoA thioesterase
0170_sll1318-sacB ATGCCCTCGTCACCAGTTCAATTTA… hypothetical protein
0108_sll0699-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
2028_slr1940-codA GTGCCACAATTTCCCATGGGTTTTT… collagen-like protein
2092_sll0169-sacB GTGTTTATCCCCCTCGACTTTTATC… DUF4101 domain-containing protein
1902_sll0424-sacB ATGCACCAAGCCCAGGCCGAAAGGC… radical SAM protein
1966_slr0142-sacB ATGAAACTATTATCAAGTGGGCAGT… DUF1275 domain-containing protein
1714_ssr2130-sacB ATGACGACCCATTTCATCACTGCTG… hypothetical protein
1462_ssr3570-sacB ATGTCGGACGTGATGATCCGGGTAG… hypothetical protein
1336_sll1601-sacB ATGACGAAGCCATTGCCATATGACC… saccharopine dehydrogenase
1146_sll2003-sacB GTGATGGGCAGTTACCATCTGCTGG… glycosyltransferase family 39 protein
1210_slr0852-sacB ATGTTACACTTCGCCCAAATTACCA… hypothetical protein
0894_slr1546-sacB GTGTCCAACTTTGTGAGGAGTGAAT… anti-sigma factor
0642_slr1699-sacB ATGGAATGGCGTGAAATTTCTGGCA… DUF1350 domain-containing protein
0580_sll0993-sacB ATGGGATTGGGATCATCAAGTCAGG… potassium channel
0390_sll0647-sacB GTGGCCGCTAACCTAACCTTTCTTG… MBL fold metallo-hydrolase
0328_slr1612-sacB ATGTCTGCCATAACTGCCCAAGAGT… hypothetical protein
3508_sll6053-sacB ATGAACAATCAAATTAGTTTGACTC… hypothetical protein
3572_sll1749a-sacB hypothetical protein
3446_sll5123-sacB ATGCCTGCCAACGTGCTACCAGAAA… translesion error-prone DNA polymerase V autoproteolytic subunit
3256_slr7088-sacB ATGGATTTAGCTGTTAGTAAGATTC… peptidase
3320_slr8046-sacB ATGTTAAGAGAACTAATTAAGCTCT… transposase
3130_slr1192-sacB ATGATTAAAGCCTACGCTGCCCTGG… zinc-containing alcohol dehydrogenase family
3194_slr7026-sacB GTGCTTAAAATGAATTCCCCAACTT… hypothetical protein
3068_slr1659-sacB ATGGAAATAACCACTGAAGACTATC… hypothetical protein
2942_ssr2439-sacB ATGCAAGCACAAACTTTCTCCCACC… hypothetical protein
2752_sll0781-sacB ATGACAACACCTTTAGTTCCTCCCT… DUF1348 family protein
2816_sll0043-sacB ATGCTCAACTCCGACATTCGTGACC… hybrid sensor histidine kinase/response regulator
2690_slr0120-sacB GTGGAGCCCCAGGGGGAAAGAAATG… TrmJ/YjtD family RNA methyltransferase
2500_slr0920-sacB GTGAATTTTCGTAACCCAGTTCCCA… NUDIX hydrolase
2564_slr0845-sacB GTGTCCGGTAAAAAAAATGATTACG… hypothetical protein
2248_sll0209-sacB ATGTTTGGTCTTATTGGTCATCTCA… long-chain acyl-[acyl-carrier-protein] reductase
0138_slr0250-sacB ATGGTTCGTTTGCTCATGGTATTCC… hypothetical protein
0202_slr1772-sacB ATGGTCGGGGCGATCGCCCGATGGG… linear amide C-N hydrolase
1996_ssr0256-sacB GTGCTTAATGCCATTTTTTACATGC… transposase
2060_slr0326-sacB ATGCCATGGCTGGAGGGAGAGTTGC… No conserved domains found
0077_sll1049-sacB GTGTCTATGGTTGTCGATTCTGTGC… transglutaminase family protein
0203_sll1686-sacB ATGTTAGTCACCGACTCTCTTTTGC… TM0106 family RecB-like putative nuclease
1997_slr0166-sacB ATGCCAACCCTAGTGCTGGTTGTTT… transposase
1871_slr1638-sacB ATGGAATTTAACTTTGACTTTCATA… DUF760 domain-containing protein
1935_slr0291-sacB ATGAAAAACCAACTTTACGAAACGG… DUF29 domain-containing protein
1809_slr1692-sacB ATGAATTCCTCGCTTTACCATGGTG… EAL domain-containing protein
1619_slr1969-sacB ATGCTACCCGCTTTTTCCCCCATTT… hybrid sensory kinase
1493_sll1240-sacB ATGAATAATCATATTCAGGAAGATT… hypothetical protein
1557_sll0808-sacB ATGGCTTACGATCTTGATTTACGTC… transposase
1367_ssl0461-sacB GTGAGTTGCCGACGGTTGTCAACTT… Cyanobacterial Signature Protein
1431_slr1505-sacB ATGGATTTTCTCGCCTCCGAGTCCT… hypothetical protein
1241_slr0871-sacB ATGAAAACCGACAAAATTGGCTACC… hypothetical protein
1053_ssl2595-sacB GTGGCTAAGTATGTGCTTTGGGGAA… hypothetical protein
0991_sll1280-sacB GTGAAGTTAGGCCGAATTTTAAAAA… M48 Ste24 endopeptidase-like, integral membrane metallopeptidase
0801_slr1198-sacB ATGGCCTTACAACTCGGTGATGTTG… rehydrin or peroxiredoxin
0865_sll1722-sacB ATGCACTCCATTCAATCACCCCGAC… glycosyl transferase
0675_slr2008-sacB ATGTTAGGGCCAGAAGCCTGTATTT… cation:proton antiporter
0739_sll1824-sacB ATGTTCCACGGAAGAATGCCGCACC… Ribosomal protein L25 (general stress protein Ctc)
0549_slr1906-sacB ATGGTCAAGTCCACCCCTTCTCCTC… GNAT family N-acetyltransferase
0613_slr1383-sacB ATGAAAAGTACGGTTTACATTGAAA… PIN domain-containing protein
0423_sll1510-sacB ATGGCATCATTAATCAGCTTTTGGT… sterol desaturase family protein
0487_ssr2962-sacB ATGAATAGCTTACTGTCTCGCATTA… DUF433 domain-containing protein
0297_sll0938-sacB ATGCAATTTGCTGATCGTCTCAACG… aspartate transaminase
3477_slr6022-sacB GTGGTTGCCCCTGCGGGGCATTTTT… hypothetical protein
3541_ssr6086-sacB ATGTATTTTGACCGTTTCGACATTG… hypothetical protein
3351_sll5028-sacB GTGGGAAGCAGTATTGAATCCGTTG… hypothetical protein
3415_ssr5092-sacB ATGATTAACCAAGCTATTCAATTAG… hypothetical protein
3225_slr7057-sacB ATGACAAGGACTCTGCCACCTGTGT… HNH endonuclease
3289_slr8015-sacB ATGTCAAAAACCATAGCCATAGTCA… ParA family plasmid partitioning protein
3163_slr0606-sacB ATGCGCATCCTAGCCCTTGTCCCCG… lipopolysaccharide heptosyltransferase family protein
3037_sll0733-sacB ATGGAATTTACCTTTTTACTACCCC… DUF4278 domain-containing protein
2911_sll0524-sacB ATGGTAGTCTACGCCAGTCCTACTT… hypothetical protein
2785_sll0664-sacB ATGATAGCTGATAGTTTTTTACTTA… hypothetical protein
2659_slr0625-sacB ATGCTCAGTTTAATTAATGTTTTAT… sodium:glutamate symporter
2723_sll0800-sacB ATGTTTGACAATCTGTGCAAATTCC… contain a domain for predicted transposase
2533_slr0580-sacB ATGAAATATTCCAGCTTCCTTAAAC… aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
2597_slr0092-sacB ATGGCCGACCGTCCCCAGTTGAGTA… glycosyltransferase
2407_sll0396-sacB ATGAGTCACCGTGTTCTAGTTGTGG… OmpR subfamily
2281_sll0409-sacB ATGGATAAACCCTATCACGTTAAAT… o-succinylbenzoate synthase
2345_slr0479-sacB ATGACTGCCCCCTATTTTTCCCTCA… PD-(D/E)XK nuclease family protein
0171_sll1041-sacB ATGAGTGAACCAGTCCAGCCCATTA… ABC transporter
2219_slr0006-codA ATGGTTACACTAGATAAAACTGCAA… Glutamate/glyoxylate aminotransferase
0235_ssr2998-sacB ATGACGATTGAAATAGGTCAAAAAG… DUF2862 domain-containing protein
2029_ssr3300-codA GTGGTGGTGCAGGTTTACGGTTCTA… hypothetical protein
2093_sll0168-sacB GTGTTGATGAAATGTTGGTTAGCGG… hypothetical protein
1903_sll0423-sacB ATGTTGACCCACCACCGTCGTCCGG… hypothetical protein
1967_slr0143-sacB ATGTCGCCGATCGCCCTCAATTTAT… beta transducin-like protein
1841_slr0953-sacB ATGCGACAGTTATTGCTAATTTCTG… sucrose-phosphate phosphatase
1715_slr1287-sacB GTGGGGGCGGCCCTTGGTGGTTACG… DUF3326 domain-containing protein
1525_sll1217-sacB ATGTCAGAGCTTCAAACCCTGATCC… hypothetical protein
1463_ssr3571-sacB ATGGAAACCATTAATTATCAACAAT… type II toxin-antitoxin system Phd/YefM family antitoxin
1273_slr1257-sacB ATGTTAATCCTGCGTCGCCTAATAC… transporter substrate-binding domain-containing protein
1337_slr1724-sacB ATGTTATTTGCCCATGAGGCTTCCA… DUF3153 domain-containing protein
1021_slr0878-sacB ATGACTCCCCATGTGGTGAAAGCTG… M23 family metallopeptidase
0895_slr1547-sacB ATGATTAATTTGGTTGAATTTAATC… permease
0959_slr1240-sacB ATGGCCAGAAAATCAAAAGAATTTC… hypothetical protein
0643_sll1584-codA ATGGAAAACCCTGTCCCCATAACTC… ferredoxin
0707_slr1134-sacB GTGTGGAGATATGCCCAGGTTTTCA… NUDIX hydrolase
0455_sll1011-sacB GTGGGCCATTGCACAGCGGTGATTA… hypothetical protein
0329_slr1613-sacB ATGGTTTTTACATTAGAAAAGTCTC… Uma2 family endonuclease
3509_sll6054-sacB GTGATGACTTTTTTACCTGAGAGCG… hypothetical protein
3447_slr5124-sacB ATGTTTGACAATCTCTGCAAATTCC… Rpn family recombination-promoting nuclease/putative transposase
3321_ssr8047-sacB ATGTCATTGGATAGACAATTAAACC… hypothetical protein
3195_sll7027-sacB GTGGTACTCGGGCTAAATCCTGGTG… hypothetical protein
3005_ssl2874-sacB ATGGAAATTCAACTCATCAACATTG… DUF370 domain-containing protein
3069_slr1660-sacB ATGGCCCGCAGACCCCCACCCCGTT… DUF3172 domain-containing protein
2753_sll0780-sacB ATGCAAATTTCAATTCCCGACTCGA… contain UPF0175 super family conserved domains
2627_sll0473-sacB GTGTTGGCCGGAATAGGTGCATTGA… hypothetical protein
2691_slr0121-sacB ATGATTACTTCCATGCCCCGCCGTC… class A beta-lactamase
2375_slr0719-sacB ATGCCACAACGTCTGCCCAGGGGAC… pentapeptide repeat-containing protein
2439_slr0427-sacB ATGGCGGCTGAGATTATCTGTGTTG… competence/damage-inducible protein A
2187_sll0321-codA ATGGTTCAAGTTGGTGCGGCGGCAA… FAD-dependent oxidoreductase
0140_slr0252-sacB ATGGTGGATAGCCTGGCAACCGTTT… precorrin-6A reductase
2188_slr0347-sacB ATGACCACTCTGTACAATCTGCTCG… ABC transporter permease
0078_slr1127-sacB ATGCCGTTAGAATGGAAAGGAGGGC… hypothetical protein
0204_ssr2972-sacB GTGTCAGGATTCAATCAACAGTTAA… hypothetical protein
1810_slr1693-sacB ATGAGCAATTCAGTTTTGTCCACTT… PatA subfamily
1684_sll1369-sacB ATGGTGAGAATCTTTGGGGCGACGG… sll1369
1494_sll1239-sacB GTGACCAATAATTTGACTTCAGACC… hypothetical protein
1558_slr0821-sacB GTGGTTTCACCGGCTTTGCCCCGGT… MoaD/ThiS family protein
1368_sll0249-sacB ATGACAAACCAGAATATGCCCCCGG… alpha/beta hydrolase
1432_sll1424-sacB ATGACCAGTGCCTATATTCTGGTTC… DUF3084 domain-containing protein
1306_sll1906-sacB ATGACCGTTAGCGAATCGATGGCCG… 44.5 kD bacteriochlorophyll synthase subunit
1054_sll1315-sacB ATGAAGCATATATTTAGGTTTAAAA… hypothetical protein
0928_sll1142-sacB ATGATTGAGATGAGAGTAGCTGGCA… bifunctional nuclease family protein
0866_slr1837-sacB ATGGCCAATATCCTCTTAGTGGACG… response regulator transcription factor
0550_slr1907-sacB ATGGAGTTGGCGGGCTTGGCTATGG… hypothetical protein
0614_ssr2317-sacB GTGCCTGCCGAGAATTTGGCTTTGA… hypothetical protein
0488_slr1767-sacB ATGAATATTTGGGTTGATGCTCAAC… hypothetical protein
0298_ssl1792-sacB ATGGCTTTCTTTAAAAGTTTATTTT… SH3 domain-containing protein
0362_slr1087-sacB GTGGCCTGTGGGGTTTCCCCCGATG… hypothetical protein
3478_ssl6023-sacB ATGAGTGGCCGAGGTCGTCCTGGTG… hypothetical protein
3542_slr6087-sacB ATGACAACCACCACTAAAACCACCG… siphovirus Gp157 family protein
3352_slr5029-sacB ATGACAAAGACAAGAGAGGCAAAAA… transposase
3416_slr5093-sacB ATGATCAGGCGACGAAGTTTTTTTA… FAD-dependent oxidoreductase
3226_slr7058-sacB ATGAAAGATGACCGTTATCCCTCCG… contain a COG3183 super family conserved domain
3290_slr8016-sacB ATGGCAAAACGTCAATCTCTAGACA… plasmid partitioning protein
3164_slr0607-sacB ATGACTAGCATTATGATGAATACCG… cyclic nucleotide-binding domain-containing protein
3038_slr0751-sacB ATGAAAGTTAATTTAGGCAATTGCT… tetratricopeptide repeat protein
2786_slr0709-sacB ATGACCATGAAAATTATTCAAACTG… RidA family protein
2724_slr0787-sacB ATGCAAACTAAATATCAATACGGGA… bifunctional nicotinamide-nucleotide adenylyltransferase/Nudix hydroxylase
2534_slr0581-sacB ATGAAAAATTCCTATTCCGCTCTCT… hypothetical protein
2408_sll0395-sacB ATGACCCTCAATCTCTACTTTTTGC… histidine phosphatase family protein
2472_sll0178-sacB ATGTCGCAACAAAACTATAATTGGA… NACHT domain-containing NTPase
2282_sll0408-codA ATGGGGGCGTTGAAGTGGGAAAATT… peptidyl-prolyl cis-trans isomerase
2156_sll0765-sacB ATGGCTTATCAGGTAACAACTTTTT… rhodanese-related sulfurtransferase
0172_sll1040-sacB ATGCCTATGGGTTGCCGATTTGCCA… mechanosensitive ion channel family protein
2220_slr0007-codA ATGGCTCTTTCCCCCGCAGACGTTA… nucleotidyltransferase
0236_slr1794-sacB GTGGCGTTAGTTCTGACTTTTTTAG… arsenic-transporting ATPase
2030_sll1845-sacB GTGTTTATGATTCCAGCTTGGCTAT… hypothetical protein
2094_sll0167-codA ATGTTTACCAAAATCCGTGACCTTG… hypothetical protein
1904_sll0422-sacB ATGACCCCCAAATTAATCATCCATG… asparaginase
1968_slr0144-sacB ATGGGTTACCTGCCAAGCCAAACTG… hypothetical protein
1778_slr1674-sacB GTGACCCATGAACCCCAACGTCCCC… DUF760 domain-containing protein
1842_ssr1600-sacB GTGGTGCTGGACTTGTCCACCATTG… anti-sigma factor antagonist
1526_ssr1375-sacB GTGTCAGCTACCCAGGTAGACGTTT… hypothetical protein
1274_slr1258-sacB ATGAGTACCATCAAGGCCCTGTTAC… SIMPL domain-containing protein
1338_ssl3127-sacB GTGGTGCTGGGGGGAGCTGACAGTA… branched-chain amino acid ABC transporter permease
1148_sll2002-sacB ATGGGCGTTACCTGGGAATTGGATT… DUF1092 family protein
1086_sll1775-sacB ATGTCCCTGTTAGTCCAGAAACCTG… hypothetical protein
0896_sll1466-sacB ATGAACGTTCTCTTTCTTCACCAAA… glycosyltransferase
0960_slr1241-sacB ATGCAAATTTCCCCAGCATTTAAAT… hypothetical protein
0834_slr2077-sacB ATGAATGGTATTCACCGTTGGCTTT… EAL domain-containing protein
0708_slr1135-sacB ATGATTGAAGATAATCAGTCCCACA… hypothetical protein
0582_slr1023-sacB ATGAAAAACCTTTGGCAATTGCCCG… cupin domain-containing protein
0392_sll0645-sacB ATGTCTAACCGCCCAGGAAAGTTAC… DUF928 domain-containing protein
0266_ssl2384-sacB ATGTTTGATCGTTCCAACAAAGATT… hypothetical protein
0330_slr1614-sacB ATGTTTTTACATGTTGTTTCTGCTT… DUF2442 domain-containing protein
3510_sll6055-sacB GTGGTGGTAAATGCACAGCAATTCA… hypothetical protein
3384_sll5061-sacB ATGATAACCCTGACCAGTCCTGGAG… PAS domain S-box protein
3448_ssl5125-sacB ATGGGAAAAGCAGTTGCCTTTGGCA… hypothetical protein
3322_sll8048-sacB ATGAATACTAGCATCACCACCACTC… M48 family peptidase
3132_slr0586-sacB GTGGCTAATATGGTGCAGAAGCTCG… HAD family hydrolase
3196_sll7028-sacB ATGAGCGATGATTGCCAAGCTCTGC… hypothetical protein
3006_slr1575-sacB ATGCCCTTTGTTGCCATTGCTTTCG… mechanosensitive ion channel
2754_sll0779-sacB ATGGCAATTTCCGCACAAAGTTTCA… PAS domain S-box protein
2628_slr0517-sacB ATGGAAAAATCACCGTTGAGTCCCC… GNAT family N-acetyltransferase
2440_sll0189-sacB ATGACGGATTTAGGACAGGCCGGGG… YraN family protein