Plasmids and Cultures

This database contains entries for 3,572 known and predicted gene coding sequences in Synechocystis sp PCC 6803 based on the Kazusa genome sequence and nomenclature (http://genome.microbedb.jp/cyanobase/GCA_000009725.1). Plasmids for generating marked mutants and mutant strains can be searched for by gene Name/Accession (e.g. 'sll1226' or '1513_sll1226-sacB'),  gene homology (e.g. 'hydrogenase large subunit'), Gene ID (e.g. hoxH), or by a portion of the gene coding sequence Sequence (CDS).

Please note, the library is still being completed. Plasmids and/or marked mutants may not be available. Users can also search for available materials by Plasmids made or Mutant made.

Plasmids, mutants and the unmarking spacer plasmid pUC19K-UL are currently available on request. Regardless of the segregation status of the mutant, open reception of a cyanobacterial mutant strain we recommend 1-2 cycles of restreaking on a selection plate containing kanamycin (100 μg/ml).

Name CDS Gene Homology Gene ID Sort descending
3496_slr6041-sacB ATGCAGAACAATAGATTATTCAATC… two-component sensor histidine kinase
3560_slr6105-sacB ATGATATCAAATTTTGGACATATTG… transposase
3370_sll5047-sacB ATGACCCCCCAAGCCCAACTGGTTC… hypothetical protein
3434_slr5111-sacB GTGCAAATAAACTACTACACTGCAA… hypothetical protein
3244_slr7076-sacB ATGTCGCTGGACACGCTGGTGCCGG… HNH endonuclease
3308_sll8034-sacB ATGCTAACCACCCAAATCACCCAAA… 2-nitropropane dioxygenase
2992_slr1563-sacB GTGCCCGTGAATTCCCCAGCCCCCT… fructosamine kinase family protein
2866_slr0541-sacB ATGCAAGCTCACTTTTTCCAGCACG… amidotransferase
2930_sll1338-sacB GTGTTAAACAAATCTGTTCAGATCC… hypothetical protein
2804_sll0742-sacB ATGGTCACTCAGATGAATACCAAAA… DUF29 domain-containing protein
2614_sll0481-sacB ATGGTGCAGTCAACCGTCGAACTTT… hypothetical protein
2678_sll0095-sacB ATGATGCTCATTTCGCAACCGATGG… AarF/ABC1/UbiB kinase family protein
2488_slr0904-sacB ATGTTAGCAAGGGTTTGGAGTGCTT… magnesium chelatase
2236_sll0007-sacB ATGGTTTTAGCCTCAGCAAAAGTAC… Uma2 family endonuclease
2300_sll0072-sacB ATGACTAATATTCCTTACCGAGAAA… helix-turn-helix domain-containing protein
2110_sll0154-codA ATGAGCCATAGCCGCTTTAAGTCCG… YvcK family protein
2174_slr0782-sacB GTGGTGATACGATCAGGCAAAACTA… amine oxidase
2048_ssl1807-sacB ATGAATTTTTACTGGCCCCGTTTTG… hypothetical protein
1922_sll0266-sacB ATGTGTACTATGACTGCTGTGATTA… hypothetical protein
1796_slr1684-sacB ATGACTCGAATACCAGATATTAAAT… transposase
1544_sll0812-sacB ATGGGTTCCCCAGAATTTTCTCCTA… hypothetical protein
1608_slr1962-sacB ATGAAACGCCGTCAACTCCTTGGCC… C4-dicarboxylate ABC transporter
1482_slr2123-sacB ATGAAATGGAAAGTTTTAGTAACCT… D-isomer specific 2-hydroxyacid dehydrogenase family
1292_slr2062-sacB ATGAAGCTAAGGTATCAGTACCGAT… transposase
1356_sll0254-sacB ATGACTGAATTACCCCCCAATCCTA… FAD-dependent oxidoreductase
1166_slr1812-sacB ATGGTTGCTGAACTCCGCAAAACAA… DUF29 domain-containing protein
1230_sll0843-sacB ATGAAGCTAGCATTTTTTCAAAAAT… hypothetical protein
1040_ssr1499-sacB ATGGACGTGTTACTCGATCGCCTAA… hypothetical protein
0978_slr1444-sacB ATGGAAACAACACATAGCTTTGGCG… CHAD domain-containing protein
0788_sll1786-sacB ATGCATTTAGTTGATACCCATGTCC… YchF/TatD family DNA exonuclease
0662_ssr2857-sacB ATGACTATTCAACTAACTGTACCCA… copper chaperone
0726_slr1147-sacB ATGGCCGGTTCCATCTCATCAATGT… sensory transduction histidine kinase
0536_slr2046-sacB ATGAGCGTCTACAATCTTGATTTGT… cadherin
0600_sll0982-sacB ATGACTACCAACAACAGCACTTTGT… hypothetical protein
0410_slr1592-sacB GTGCTGGACTTCTACTCCCAACGCT… RluA family pseudouridine synthase
0474_slr1753-sacB GTGGTGGAAATATTGTTAATTTCAC… CHAT domain-containing protein
0284_sll1186-sacB ATGTTGCTAGCCCTAGACCGCATCA… Uma2 family endonuclease
0348_slr1074-sacB ATGCCCACCATAAGAATTAATAAAT… hypothetical protein
0096_slr0728-sacB GTGTGGGCCGCCCTGACCCTATGGT… O-antigen ligase family protein
3528_slr6073-sacB ATGAGTTTACCAACTGAATTGATTG… hypothetical protein
3402_sll5079-sacB ATGATTCTCGTCAGTTTGTATCCGT… glucose 1-dehydrogenase
3466_slr6011-sacB ATGATTACTGCTTGCAGTCAGGAGC… thermonuclease family protein
3276_sll8002-sacB ATGACCGTTCCCGCTCAGCCTAAGA… DUF4433 domain-containing protein
3340_slr5017-sacB ATGCTCTCAGTAACTCACCTCAAAA… DNA polymerase subunit beta
3150_slr0596-sacB ATGCGACCTTCCGCCCTTATTCCCC… creatinine amidohydrolase
3214_ssl7046-sacB ATGCAGGTGCTTACCTACCTCAAGT… putative toxin-antitoxin system toxin component%2C PIN family
3088_sll0448-sacB ATGAATAGACTGAGAAATTTTGCAA… hypothetical protein
2772_smr0002-sacB ATGTTAAGAGAACTAATTAAGCTCT… transposase
2836_slr0042-sacB ATGAAACAATATCGATTCACTTGGC… Cyanobacterial Signature Protein
2646_ssr1038-sacB ATGAATACCACATCTCCCATTGACT… hypothetical protein
2710_sll0281-sacB ATGGTTGCCATCGATAATAATTTGA… DUF1822 family protein
2520_sll0545-sacB ATGGCCCTATGCTTAAAAATTGTCA… phosphatase PAP2 family protein
2584_sll0082-sacB GTGAACGAAGAGCGTTTTGCCGACA… hypothetical protein
2458_ssl0350-sacB GTGAAATATACAATCGTTATTCAAT… type II toxin-antitoxin system HicA/B family antitoxin
2268_sll0192-sacB ATGTTGCCGAAGATTCTACTGCTCA… hypothetical protein
2332_sll0051-sacB ATGGTTACCGAACAAGACCGTGAGT… nucleoside deaminase
2142_slr0388-sacB ATGTGGCAATCAATTCGTTCCCTCA… ComF family protein
2206_slr0358-sacB ATGACCCCATGGACAATTTGGTTTA… hypothetical protein
2080_slr0169-sacB ATGGGCATCGAACTCCGTAGTTACG… hypothetical protein
1954_slr0400-sacB GTGCCAAAAGTCGGCATCATTTTCA… NAD(+) kinase
1764_slr1169-sacB ATGCAAGGTTTACTGCTCATTTTTT… DUF1049 domain-containing protein
1702_sll1173-sacB ATGGCCCAGGCTCTGTTGAATAACG… FkbM family methyltransferase
1576_slr1340-sacB ATGATTGACATTGTAAAAGCAGATC… GNAT family N-acetyltransferase
1386_sll0237-sacB ATGCTTTTATCAACGAGGAAACAAT… extracellular solute-binding protein
1324_slr1716-sacB ATGTTAAGAGAACTAATTAAGCTCT… transposase
1198_sll1621-sacB ATGACCCCCGAACGAGTTCCCAGTG… peroxiredoxin
1072_slr1855-sacB ATGAGTCCCAAAATTAACTTTCCTT… AGE family epimerase/isomerase
0882_slr1535-sacB ATGGTATCGATCGCCGAACGGACAA… hypothetical protein
0504_sll1751-sacB ATGGCTGTTGAACCCATTCCCCCAA… hypothetical protein
0568_sll1830-sacB ATGATCAATCGTCAGGACCTCAAGC… hypothetical protein
0378_sll0654-sacB ATGACCATTAACAGCGGCGTTAGTT… alkaline phosphatase
0442_ssr2711-sacB GTGGGTTTGCAACGGTGGCAGGGTA… hypothetical protein
0252_sll1656-sacB ATGAACCGACGCAACACCGAATTGG… DUF3611 family protein
0316_sll0922-sacB GTGATTCCAGTTCCTGGGCCGTTAT… hypothetical protein
3497_slr6042-sacB ATGCAAAACCGGATCATTGTTCAGG… efflux RND transporter periplasmic adaptor subunit
3561_slr6106-sacB GTGCGATTCAACGATTCTGGGTCAG… hypothetical protein
3371_sll5048-sacB ATGAAAATCACCTTTGTTTTACCCT… glycosyltransferase
3435_slr5112-sacB TTGATTGTACAGGTTACTTCTGGTT… hypothetical protein
3245_sll7077-sacB ATGAATTTATCCCATCCTACTCCCC… bifunctional (p)ppGpp synthetase/guanosine-3'%2C5'-bis(diphosphate) 3'-pyrophosphohydrolase
3309_sll8035-sacB ATGTTTGCCAACGTGATCGCCACCC… hypothetical protein
3057_sll1552-sacB ATGTATGAACCAATTCAATTGGACA… N-acetyltransferase
2931_sll1336-sacB ATGGCTGACGATATTCGCATTTTGA… TIGR00300 family protein
2741_sll0788-sacB GTGGGTAATCAATTCTGGATATATG… DUF305 domain-containing protein
2615_sll0480-sacB ATGGCCAGTATCAACGACAACTATC… LL-diaminopimelate aminotransferase
2679_sll0094-sacB ATGGCAATCCACTATGCGTCCCTTG… sensory transduction histidine kinase
2363_ssl1300-sacB ATGAAAAGATCTGTAACTATGTCTT… antitoxin
2301_sll0071-sacB ATGCGTAAACTTTACTTTTTATTAC… glycosyltransferase
1985_slr0157-sacB ATGGCTATCTCTCTAGATGAAGATA… hypothetical protein
1923_sll0265-sacB ATGGCACAAACTGTTAGTGGCTTTA… ferritin-like domain-containing protein
1797_sll1559-sacB ATGGATAATAAGCAAATGTTGATGA… Serine/glyoxylate aminotransferase, soluble hydrogenase 42 kD subunit
1671_slr1474-sacB ATGGCGAGTGGAAATAAGTTTCAGT… NlpC/P60 family protein
1735_slr1533-sacB ATGACAGCTCCCCTAACCCTCAACT… hypothetical protein
1609_sll1895-sacB ATGCTTTATCAATTGGTCGTTGATT… EAL domain-containing protein
1419_slr2103-sacB GTGCTAAGAGCGACCAGTGATCGAT… acyltransferase family protein
1483_slr2124-sacB ATGAAACCAGTTGTTCTTATCACCG… short-chain alcohol dehydrogenase family
1293_sll1951-sacB ATGGCACTAAGTCCTAACGTAATTG… hemolysin
1357_sll0253-sacB GTGAAAACTGCGATGATCCCCATTT… hypothetical protein
1167_slr1813-sacB ATGGTTGCCGAACTCCGCAAAACTA… DUF29 domain-containing protein
1041_slr0890-sacB ATGGGTTTAGTTTATGCCAATATTG… clan AA aspartic protease
0915_sll1634-sacB ATGAGCAAGGAATTTCGAGAGCTAT… hypothetical protein
0979_ssr2422-sacB ATGACTAACAATGACAATATTCGCT… thylakoid membrane protein
0853_sll1736-sacB GTGAACAACTTTTCCCCCAAATTTG… hypothetical protein
0663_slr1708-sacB ATGCAGTCCCAATCGAGGATAAAAG… lysostaphin
0727_slr1148-sacB ATGCGAATCCCTTACGAAAAAGCAA… DUF4269 domain-containing protein
0601_sll0981-sacB ATGAGCCTGAAAAAATTTAAGGAAG… hypothetical protein
0411_slr1593-sacB ATGTTTATATTTCCACGCTTTCCCC… EAL domain-containing protein
0349_slr1075-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
0097_slr0729-sacB ATGACCTCAACTACCCCAGAGATTG… Cyanobacterial Signature Protein
0223_sll1675-sacB ATGACCCTTTCTTCTGGTTTACCTA… VOC family protein
3529_slr6074-sacB ATGAAAATTATTGTTAAATTACAAG… hypothetical protein
3403_sll5080-sacB ATGAGCACCATCACTACCAAAGACG… non-heme chloroperoxidase
3467_slr6012-sacB ATGGACAGCCCCCGGCAATTGTCAT… hypothetical protein
3277_ssl8003-sacB ATGACCAATCAACAGGGTAATGTTA… hypothetical protein
3341_slr5018-sacB ATGAATCGTGACAACGCTTATCTGC… DUF86 domain-containing protein
3215_sll7047-sacB ATGACAAACCGAATGATAGAGACTT… DUF4386 domain-containing protein
3089_sll0447-sacB ATGGAATTTTTTAAACTTATATCAG… hypothetical protein
2963_slr0654-sacB GTGGTAATTCCAACCCTTAAGGCAC… hypothetical protein
2773_slr0704-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
2647_slr0617-sacB ATGATTAACGGAAAGCCCCAACCTC… hypothetical protein
2711_sll0280-sacB ATGGAAAAAGATCATTGTTCCCTCG… hypothetical protein
2395_slr0643-sacB ATGTGGCTTCTTTTGCTCATCCTTG… fbt
2459_sll0180-sacB ATGGTTAGAAAACGCTCCCAATTCC… efflux RND transporter periplasmic adaptor subunit
2269_slr0232-codA ATGGGTTGGGAATTTTTTTCGCTAG… DedA family protein
2143_slr0769-codA ATGCAGAAACAAGTCTCTCCCCTAG… L-2CD-transpeptidase
2207_sll0310-codA ATGAGTTTGAGTTACCGTATTCGTC… N-acetyltransferase
2017_slr1935-codA ATGGAATCTAAGTTGCTGAGTGCAA… MFS transporter
1955_slr0401-sacB ATGAATTTACCCTGCTATTCCCGCC… spermidine/putrescine-binding periplasmic protein
1765_slr1170-sacB GTGTCCCCACCATTGCCGCTGTTAC… TMEM165/GDT1 family protein
1639_slr1980-sacB ATGGTTAGAATCATTGCAAAAAGCC… hypothetical protein
1577_sll1255-sacB ATGATATCAAATTTTGGACATATTG… transposase
1387_ssl0438-sacB ATGGGCATGACTATAATTTTGATAT… 50S ribosomal protein L12 honologue
1451_ssr2554-sacB ATGGTTTTTATTCCTGATGAGAGCG… hypothetical protein
1325_sll1609-sacB ATGATGGTCGTTGCTACAACTAAAA… Uma2 family endonuclease
1073_slr1856-sacB ATGGATATTCAAATTAATCAACAGG… anti-sigma B factor antagonist
0947_sll1132-sacB ATGATGGGTAAATTTTTTCACTTCA… hypothetical protein
0695_sll1916-sacB GTGAAAATAGCCCTTTTTGGCACCA… nicotinate-nucleotide adenylyltransferase
0569_slr1919-sacB GTGCCTAACCCCAAACCCCTGCCAC… AarF/ABC1/UbiB kinase family protein
0317_slr0976-sacB ATGTCAGCAATAACGGCCCAGGAAC… Uma2 family endonuclease
0127_slr0243-sacB ATGCGAAAATCACTTTCGGGCAAGC… hypothetical protein
3498_slr6043-sacB ATGCTTAATGCCATCCTCAAATGGT… CusA/CzcA family heavy metal efflux RND transporter
3562_slr6107-sacB ATGATTTTATTTCAGGGGAAAGATT… CAP domain-containing protein
3372_sll5049-sacB ATGGCTTCCCTCAATAAACTGGCCA… hypothetical protein
3436_ssl5113-sacB ATGTCCACTGTTACCGAGTCAGACC… hypothetical protein
3246_sll7078-sacB GTGGATGCTAACTTTAATTTTCCTA… TIGR03985 family CRISPR-associated protein
3310_slr8036-sacB GTGCTGTCTCTAGGGCAAATCTATG… GNAT family N-acetyltransferase
3120_slr1182-sacB ATGAATCAATTTAGGGACTGGGGTT… isoprenylcysteine carboxylmethyltransferase family protein
2994_slr1565-sacB ATGCTGCAATTGACCCCCAGTGCCG… iron-sulfur cluster assembly accessory protein
2932_slr1428-sacB ATGGCGATCGCCAATTCCCGTTTTC… GTPase family protein
2742_slr0799-sacB ATGATTCCTCCCGCAAAGCCCGGAG… transposase
2806_sll0740-sacB ATGGCCAAACGGCGATCGACGCAAA… Uma2 family endonuclease
2616_slr0509-sacB ATGTCCCAGTGGATCACAGAATGGA… alkaline phosphatase like protein
2680_slr0110-sacB GTGTCCACACCAAAGATTTTGGCAG… ParA family protein
2364_sll0689-sacB ATGTTTATGAACCCATTGCTCCCTC… Na/H+ antiporter
2428_sll0376-sacB ATGACCCCATCAGATTATCAGGATC… hypothetical protein
2238_sll0005-codA ATGTCTCCAGCCCCCATGCCCGTTA… ABC1-like
2112_slr0359-sacB ATGGACAAGGGAGGAAAGACCTATA… EAL domain-containing protein
2176_sll0749-sacB GTGGAAAAAATCATGAGCGAACAAA… hypothetical protein
1986_sll0142-sacB ATGTCCTCCCCCAACTCCGTTTTTA… efflux RND transporter permease subunit
1924_sll0264-sacB GTGTTTGGCGGAAGTGTCAACGGAA… aromatic ring-hydroxylating dioxygenase subunit alpha
1798_slr1686-sacB ATGGCCGCCATCACCCTCACCCTCC… FHA domain-containing protein
1672_sll1381-sacB ATGGCCAATTTAGAAACCTATGTGC… hypothetical protein
1736_slr1534-sacB ATGTCTTCCCTGCCCAAAAATTTTC… LD-carboxypeptidase
1546_slr0815-sacB GTGTTTTTTTGTTGCCCATTGTTCC… DUF3007 family protein
1610_slr1963-sacB ATGCCATTCACCATTGACTCTGCCC… orange carotenoid-binding protein
1484_slr2125-sacB ATGACGAAAAACACAACCGTAGAGC… DUF115 domain-containing protein
1294_sll1950-sacB ATGTCTTCCCCCAGCCTTTCCCCCC… FkbM family methyltransferase
1168_slr1814-sacB ATGGTTGCTGAACTCCACAAAACCA… DUF29 domain-containing protein
1232_slr0864-sacB ATGCTCCGACTCGAACACATCCGCA… ABC-F family ATP-binding cassette domain-containing protein
0916_slr1748-sacB ATGGCCCTCAAACTTTATTTCCTGC… histidine phosphatase family protein
0854_sll1735-sacB ATGCCTAACATTGTTGAAATTGCGG… fasciclin domain-containing protein
0728_slr1149-sacB ATGACCCCGTCCCCTGCTGCTCCCC… ABC transporter ATP-binding protein
0538_slr2048-sacB ATGCCAAGCCGTCCCTTGGGGCGGA… tetratricopeptide repeat protein
0602_sll0980-sacB ATGGCTAATTCTTCTCCCCCCAATG… ribonuclease HI
0476_sll1647-sacB GTGATCCCATCTGACCTTTTCCTAC… N-acetyltransferase
0350_slr1076-sacB ATGCCTAGAAACCTCAAAGTTCACC… glycosyltransferase family 4 protein
0034_slr1493-sacB GTGGACCGATCGCCGCTAATGCCAT… DUF1636 domain-containing protein
0098_slr0730-sacB ATGGCCAGCACCCCCATCCAGAGCG… DUF3119 family protein
0224_slr1787-sacB ATGGGCGGTTCTGCCAAATTTTTGT… thiamine-phosphate kinase
3530_slr6075-sacB ATGACCAGACTCTTTAACCTAGAAT… hypothetical protein
3404_sll5081-sacB ATGAATGAGAAATTTTTCAAATTAG… DUF1963 domain-containing protein
3468_slr6013-sacB ATGGAAGGGGATGTTGTACAGCTAA… DUF2357 domain-containing protein
3278_sll8004-sacB ATGTGGAACGGGAGAGAATATATGT… hypothetical protein
3342_ssr5019-sacB ATGCAAAGCAATAAGCAGATCCACC… aminotransferase class V-fold PLP-dependent enzyme
3152_sll0565-sacB ATGGAAGAAACTTTTGTCGCACCGA… hypothetical protein
3216_ssl7048-sacB ATGCTTGCTAAGTTGACATCTAAGA… AbrB/MazE/SpoVT family DNA-binding domain-containing protein
3026_slr1585-sacB ATGGCTTACGATCTTGATTTACGCA… transposase
3090_sll0446-sacB ATGACTAACCAACCCCTACTTCCCA… hypothetical protein
2964_slr0655-sacB ATGCCCCAACCCATTACCCCCCAAC… DUF427 domain-containing protein
2774_ssr1176-sacB ATGGTTTTTACCGGGAGTTTGAATG… transposase
2648_sll0590-sacB ATGAAAAGAATTGGTCACATGTTGG… mechanosensitive ion channel family protein
2522_slr0572-sacB GTGGATATTTTGGCACAACTTTTGT… hypothetical protein
2396_sll0606-sacB GTGTTTGGTCGGTTGCCCTTAAGTG… hypothetical protein
2460_slr0204-sacB ATGGGGACATTTACCTATGAAAGGC… 1%2C4-dihydroxy-2-naphthoyl-CoA hydrolase
2144_slr0770-codA ATGGCGACAACCCTAATCAATCATA… DUF433 domain-containing protein
2208_sll0309-sacB ATGGTCAATCTTCTCGTAATTAGTT… hypothetical protein
1766_slr1171-sacB ATGACTGCCCAAGCCAACAACACAA… glutathione peroxidase
1830_slr0947-sacB GTGGTCGATGACGAGGCCAGCATCC… response regulator transcription factor
1514_sll1225-sacB ATGACCAACCAAACTTCTTTCACAA… PIN domain-containing protein
1578_sll1254-sacB ATGCTGGAAATTGTAGCGGCCATTT… hemolysin
1388_sll0236-sacB ATGACCGTTTCTCCCTTTGATTTCA… hypothetical protein