Plasmids and Cultures

This database contains entries for 3,572 known and predicted gene coding sequences in Synechocystis sp PCC 6803 based on the Kazusa genome sequence and nomenclature (http://genome.microbedb.jp/cyanobase/GCA_000009725.1). Plasmids for generating marked mutants and mutant strains can be searched for by gene Name/Accession (e.g. 'sll1226' or '1513_sll1226-sacB'),  gene homology (e.g. 'hydrogenase large subunit'), Gene ID (e.g. hoxH), or by a portion of the gene coding sequence Sequence (CDS).

Please note, the library is still being completed. Plasmids and/or marked mutants may not be available. Users can also search for available materials by Plasmids made or Mutant made.

Plasmids, mutants and the unmarking spacer plasmid pUC19K-UL are currently available on request. Regardless of the segregation status of the mutant, open reception of a cyanobacterial mutant strain we recommend 1-2 cycles of restreaking on a selection plate containing kanamycin (100 μg/ml).

Name Sort descending CDS Gene Homology Gene ID
0601_sll0981-sacB ATGAGCCTGAAAAAATTTAAGGAAG… hypothetical protein
0602_sll0980-sacB ATGGCTAATTCTTCTCCCCCCAATG… ribonuclease HI
0603_slr1039-sacB ATGTTGGAAAGAATTCTGGAGCCAG… class I SAM-dependent methyltransferase
0604_slr1376-sacB ATGCTACACCGGAAAATCTATCAAC… hypothetical protein
0605_slr1377-sacB ATGACCGAAAATATTGTCCGCGAAA… leader peptidase I lepB
0606_slr1378-sacB ATGGGAAAGTCCAGCCATTTCCCCC… Uma2 family endonuclease
0607_slr1379-sacB ATGCAGGATTTTTTGAGTAACACAG… cytochrome oxidase d subunit I cydA
0608_slr1380-sacB ATGGAACCGTTAGAACCGCTACAAC… cytochrome oxidase d subunit II cydB
0609_sll1300-sacB GTGTTGGCCTGTCCCGATTGGGCCA… tRNA (guanosine(46)-N7)-methyltransferase TrmB trmB
0610_sll1299-sacB ATGAAATTCCTGATTCTCAATGCCG… acetate kinase `
0611_sll1298-sacB ATGACTGTTGACATCAAGACCACCT… dienelactone hydrolase clcD
0612_ssr2315-sacB ATGTTTAAACCCAGCTTACTTTTGT… hypothetical protein
0613_slr1383-sacB ATGAAAAGTACGGTTTACATTGAAA… PIN domain-containing protein
0614_ssr2317-sacB GTGCCTGCCGAGAATTTGGCTTTGA… hypothetical protein
0615_slr1384-sacB GTGAAGATTCTTTTCATTAGCAACG… Cyanobacterial Signature Protein
0616_slr1385-sacB ATGAGTATCTACGATCCCAACCCAG… GAF domain-containing protein
0617_ssr2318-sacB ATGAAGAGTTACCGGCGCTTGAAAC… hypothetical protein
0618_sll1297-sacB GTGATGAAATTTGAAGATTTTTGGT… phenoxybenzoate dioxygenase pobA
0619_ssl2559-sacB ATGAATAATTGCGTAATTTCTTTTC… ferredoxin
0620_sll1296-sacB ATGTTTGATGCCGCCACCCTCGCCG… CheA like protein
0621_sll1294-sacB ATGGTTAGCACCCCCACTAAACCCC… methyl-accepting chemotaxis protein pilJ
0622_sll1293-sacB ATGGTAGAGGACTATTTTTGGATTG… hypothetical protein
0623_sll1292-sacB GTGAAAACTGTTTTAGTTGTGGAAG… CheY subfamily
0624_sll1291-sacB ATGCAATCTCCCCTGTCTTCTTCCC… PatA subfamily rre12
0625_sll1290-sacB GTGGAAAAAGGACAACTAATTGAAT… ribonuclease II rnb
0626_sll1289-sacB ATGGTTTTAACTCCCTCCACCATGC… thioredoxin family protein
0627_slr1390-sacB ATGAGTCATCGTCCCCGTTCCGATC… cell division protein; FtsH ftsH
0628_slr1391-sacB ATGTCCGATCCTCGTACAATCTATT… hypothetical protein
0629_ssr2333-sacB ATGACGTTATTGGATTTATCGGTGG… iron ABC transporter
0630_slr1392-sacB ATGGTGAGTCATTGCCAAAGGGGGT… ferrous iron transport protein B feoB
0631_ssl2542-sacB ATGACCACCCGTGGCTTCCGCTTGG… high light-inducible protein hliA/scpC
0632_slr1393-sacB GTGGTCATAATTGGATTACTCCTAG… sensory transduction histidine kinase hik13
0633_slr1394-sacB ATGCAAGATTTTGGCGCAGTGTTCC… divergent PAP2 family protein
0634_sll1286-codA GTGAGGCGATCGGGATTTTTCCCGC… TetR/AcrR family transcriptional regulator
0635_slr1395-sacB ATGAAACGTCCCACCCTCTACTGTG… hypothetical protein
0636_slr1396-sacB ATGAAAAAACCAGATATTGATGTGT… hypothetical protein
0637_slr1397-sacB ATGGATAATCTAACCGACTTTGCAT… hypothetical protein
0638_slr1398-sacB GTGCGTCGCCCAATACAAATTCATC… hypothetical protein
0639_sll1285-sacB GTGTTGTCTATCACTTACAGTCCCG… 7%2C8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG cofG
0640_sll1284-sacB ATGGCTCTACATTTTTCGGCGATCG… serine esterase
0641_sll1283-sacB GTGAGGAAATTTGTCATGGAATTTA… sporulation protein; SpoIID spoIID
0642_slr1699-sacB ATGGAATGGCGTGAAATTTCTGGCA… DUF1350 domain-containing protein
0643_sll1584-codA ATGGAAAACCCTGTCCCCATAACTC… ferredoxin
0644_sll1583-sacB ATGACCCCATTGGAATTGAGCTACC… DNA ligase lig
0645_sll1582-sacB ATGAACGATAAGCAAAAAGCTTCAG… DEAD/DEAH box helicase
0646_sll1581-sacB ATGAATGCTATGAATCCTAGTCAAT… sugar ABC transporter substrate-binding protein gumB
0647_ssr2843-sacB ATGGCCCGCAAGCAAAAATTTCCCC… Cyanobacterial Signature Protein
0648_slr1702-sacB ATGTCCCTCCCCGTTCCCTCCACCA… DUF1995 family protein
0649_slr1703-sacB GTGTTAGACCTCAAGCAAATTCGTG… seryl-tRNA synthetase serS
0650_ssl3093-sacB ATGTTAGGTCAATCTTCTTTGGTGG… phycocyanin associated linker protein cpcD
0651_sll1580-sacB GTGGCAATTACAACCGCAGCCTCCA… phycocyanin associated linker protein cpcC
0652_sll1579-sacB ATGACTAGTTTAGTTTCGGCCCAGC… phycocyanin associated linker protein cpcC
0653_sll1578-sacB ATGAAAACCCCTTTAACTGAAGCCG… phycocyanin a subunit cpcA
0654_sll1577-sacB ATGTTCGACGTATTCACTCGGGTTG… phycocyanin b subunit cpcB
0655_ssr2848-sacB ATGTTTGATTGTACTGTTGATTGTT… hypothetical protein
0656_slr1704-sacB ATGTTTAATAGTTTTTCGTTCCCTA… hypothetical protein
0657_sll1575-sacB GTGATTAAATACCGTCCCCTCAAAG… serine/threonine protein kinase
0658_sll1574-sacB ATGACCCCTGACTCCCGTCACCGCC… hypothetical protein
0659_sll1573-sacB ATGGTGACCAAGTTTAGTTTTCCTG… hypothetical protein
0660_slr1705-sacB ATGGTAAATTCAGCAGTTCGCTCCC… aspartoacylase ASP aspA
0661_slr1706-sacB GTGGAGGTCAATCACTGGATAGCCA… dihydroflavonol 4-reductase dfrA
0662_ssr2857-sacB ATGACTATTCAACTAACTGTACCCA… copper chaperone
0663_slr1708-sacB ATGCAGTCCCAATCGAGGATAAAAG… lysostaphin
0664_sll1572-sacB ATGGTTAAAGTTATCGGTCGTCGTT… DNA polymerase III alpha subunit dnaE
0665_sll1571-sacB ATGTCTAACCAACCTTCCCCCGGTG… hypothetical protein
0666_sll1570-sacB GTGGTGAAATCAGAATCAGGTATTT… hypothetical protein
0667_slr1710-sacB ATGGCTACCCGTTCCCGCAAAGCCC… penicillin-binding protein 1B mrcB
0668_sll1568-sacB GTGCCCAATAGTATGGATGCCAATA… fibrillin
0669_sll1927-sacB GTGGCGAATCTTAGGACACATTTTG… ABC transporter
0670_sll1926-sacB ATGGTTTTGGGCTTTGGGGCAGGGA… hypothetical protein
0671_slr2005-sacB ATGAAACGACGAAAATTTATTCGTA… hypothetical protein
0672_sll1925-sacB ATGGCTGAAAATGGTCTGAACTGTG… hypothetical protein
0673_slr2006-sacB ATGGTCGCCCTAGAGGCTTGTATTT… cation:proton antiporter
0674_slr2007-sacB ATGACCCTATTTGCAGTTTCAGCGG… NADH dehydrogenase subunit 4 ndhD
0675_slr2008-sacB ATGTTAGGGCCAGAAGCCTGTATTT… cation:proton antiporter
0676_slr2009-sacB ATGAATTTTCCCACGGCGATCGCCC… NADH dehydrogenase subunit 5 ndhF
0677_slr2010-sacB ATGACTGGACTCCTTGATATTGGTT… cation:proton antiporter
0678_ssr3409-sacB ATGGTACGAAATTCATTATCTTGGC… hypothetical protein
0679_ssr3410-sacB ATGATCACCACCATCATTAACTGGC… hypothetical protein
0680_slr2011-sacB GTGCCACCGGGGAGAAGCGCACTAA… DUF4040 domain-containing protein
0681_slr2012-sacB ATGAAAATTGTTTACCTAATTGCGG… cation:proton antiporter
0682_slr2013-sacB ATGGTTCCCACTCTCCGCTTTTATA… DUF58 domain-containing protein
0683_sll1924-sacB ATGGCACCACAAAAGCCGTCAACAA… Crp/Fnr family transcriptional regulator sycrp2
0684_slr2015-sacB ATGTACAAGTCTCCATTTTTCAAGC… prepilin-type N-terminal cleavage/methylation domain-containing protein pilA9
0685_slr2016-sacB ATGTCAGCAAAACAACTATGGAAAA… type II secretion system protein pilA10
0686_slr2017-sacB ATGAAACCATCTATCGTGTACAAAC… prepilin-type N-terminal cleavage/methylation domain-containing protein; pilA11 pilA11
0687_slr2018-sacB ATGAAAAATAAAGCGATTGGTAATC… hypothetical protein
0688_slr2019-sacB GTGACTAAACCCATTGCCCCCCTCC… ABC transporter
0689_sll1921-sacB ATGGCTCAATCCCCCTGTTCCCGAT… hypothetical protein
0690_sll1920-sacB ATGGCCCAAACCATCAATCTGCAAC… cation-transporting ATPase; E1-E2 ATPase pacS
0691_slr2023-sacB ATGAAAACTGCATGGGTATTCCCCG… malonyl coenzyme A-acyl carrier protein transacylase fabD
0692_slr2024-sacB GTGTCTGCCCACAAGATTCTAGTCA… CheY subfamily rre13
0693_slr2025-sacB ATGACTATGGCATCCCCTACACCAG… Cyanobacterial Signature Protein
0694_sll1917-sacB GTGAATACAGGTACATATTTAATGC… oxygen independent coprophorphyrinogen III oxidase hemN
0695_sll1916-sacB GTGAAAATAGCCCTTTTTGGCACCA… nicotinate-nucleotide adenylyltransferase
0696_sll1915-sacB ATGCCCCTGCATTTCGCCGCCTTGA… hypothetical protein
0697_slr2026-sacB ATGGACCAGTTGGATCAATTGAGTG… dihydropteroate pyrophosphorylase folP
0698_slr2027-sacB ATGGCGATGAGTAAGCCTAACTTAA… glycosyltransferase family 39 protein
0699_sll1913-sacB ATGGCCATTGCAACAAAATCTATTG… FAD-dependent oxidoreductase
0700_sll1912-sacB ATGAAGGTCGTCCTAGATACAAACC… putative toxin-antitoxin system toxin component%2C PIN family
0701_ssl3615-sacB ATGAGCACCATCGAGCAAGTTCTCA… hypothetical protein
0702_sll1911-sacB ATGGCCGGATTATTTGGCTTATTTG… hypothetical protein
0703_sll1910-sacB ATGGATTATTCGATCGCCACACTTT… protein conferring resistance to acetazolamide; Zam zam
0704_slr2030-sacB ATGAGTGAAGTTTCTCTGCGTCCCG… TIGR03279 family radical SAM protein
0705_slr2031-sacB GTGGTCATTCTCAAGGAGTTGGTGG… sigma factor SibG regulation protein; RsbU rsbU
0706_slr1133-codA ATGACAAAAAAAACCTGGAGCGATC… L-argininosuccinate lyase argH
0707_slr1134-sacB GTGTGGAGATATGCCCAGGTTTTCA… NUDIX hydrolase
0708_slr1135-sacB ATGATTGAAGATAATCAGTCCCACA… hypothetical protein
0709_sll1084-sacB GTGAAAACCATGCCAGTGCCCGTAG… TIGR03960 family B12-binding radical SAM protein
0710_slr1136-sacB GTGAAAATTCCCGGTAGTGTCATAA… cytochrome c oxidase subunit II ctaC
0711_slr1137-sacB ATGACTATTGCCGCTGAGAATCTAA… cytochrome c oxidase subunit I ctaD
0712_slr1138-sacB ATGACCTCCCCCATGGGCCCGACCG… cytochrome c oxidase subunit III ctaE
0713_slr1139-sacB ATGAGTTTACTGGAAATCACCGACG… thioredoxin trxB
0714_slr1140-sacB ATGGCCGCCGCAATTAAACCTTTTT… 3-amino-5-hydroxybenzoic acid synthase
0715_sll1082-sacB ATGCATCTAGAAATAACTGATTTAA… nitrate transport protein; NrtD nrtD
0716_sll1081-sacB ATGACTATTGCCCAGGATAAATTAT… integral membrane components of other binding-protein-dependent transport system
0717_sll1080-sacB ATGTTATTAACAACTAGCGGAGAAA… aliphatic sulfonate ABC transporter substrate-binding protein
0718_sll1079-sacB ATGCACCAATCCATTGACACGGCGA… hydrogenase accessory protein HypB hypB
0719_sll1078-sacB ATGCATGAAACAGACATGACCAAAG… hydrogenase maturation nickel metallochaperone HypA hypA2
0720_sll1077-sacB ATGAGCGATGCCACCCCGTTTCGTC… agmatine ureohydrolase speB
0721_slr1142-sacB ATGCAACAAGCGGCCATCCCAGCCA… GAF domain-containing protein
0722_slr1143-sacB ATGGAAGCTAAATTACCGCAAAATG… diguanylate cyclase
0723_sll1076-sacB ATGGGATGGAAAACCATCTTTGTTG… Zinc exporter ziaA
0724_sll1074-sacB GTGGCATCCCCATACAACGCTGGTG… leucyl-tRNA synthetase leuS
0725_slr1145-sacB ATGGAAACTATTCAATTCAACATAC… glutamate permease gltS
0726_slr1147-sacB ATGGCCGGTTCCATCTCATCAATGT… sensory transduction histidine kinase
0727_slr1148-sacB ATGCGAATCCCTTACGAAAAAGCAA… DUF4269 domain-containing protein
0728_slr1149-sacB ATGACCCCGTCCCCTGCTGCTCCCC… ABC transporter ATP-binding protein
0729_slr1150-sacB ATGGATATGAAATTTTTCATCCTTT… hypothetical protein
0730_sll1072-sacB GTGACTATGATGGAAAAAACGGAAA… Uma2 family endonuclease
0731_sll1071-sacB ATGGCTGTCCATTTGCCGTCCTCTG… TPM domain-containing protein
0732_sll1070-sacB ATGGTCGTTGCTACCCAGTCCTTAG… transketolase tktA
0733_sll1069-sacB ATGGCAAATTTGGAAAAGAAACGTG… beta ketoacyl-acyl carrier protein synthase fabF
0734_ssl2084-sacB ATGAATCAGGAAATTTTTGAAAAAG… acyl carrier protein acp
0735_sll1068-sacB ATGGCATCAACTGTAAATCGCCTTT… hypothetical protein
0736_ssl3451-sacB ATGGCTGATTTGTTTGTCGGTGCCC… DUF3148 domain-containing protein
0737_slr1890-sacB ATGGGTAAAAATGGAAACAACAACA… bacterioferritin bfrB
0738_sll1825-sacB GTGCCAGACTGGACTAAAAATAATC… aklaviketone reductase
0739_sll1824-sacB ATGTTCCACGGAAGAATGCCGCACC… Ribosomal protein L25 (general stress protein Ctc)
0740_sll1823-sacB GTGGTGGTGCGGCCCCAGGGGGGAG… adenylosuccinate synthetase purA
0741_ssl3446-sacB ATGGTAGTGTCCCAAAATTTTATTC… DUF2949 domain-containing protein
0742_ssl3445-sacB ATGCCCAAAGCTGATATTCACCCCA… 50S ribosomal protein L31 rpl31
0743_sll1822-sacB ATGCAAGCTAACGATTCCAGCAACA… 30S ribosomal protein S9 rps9
0744_sll1821-sacB ATGAACAAAACTGTATTACCAACCA… 50S ribosomal protein L13 rpl13
0745_sll1820-sacB ATGCATTCTTCTCCGTCTGCTGGTA… pseudouridine synthase 1 truA
0746_sll1819-sacB ATGCGACACAGATGTCGAGTGCCTC… 50S ribosomal protein L17 rpl17
0747_sll1818-sacB GTGGCGCAGTTTCAAATTGAGTGTG… RNA polymerase alpha subunit rpoA
0748_sll1817-sacB ATGGCGCGTCCTACCAGAAAAACTG… 30S ribosomal protein S11 rps11
0749_sll1816-sacB GTGGCACGCATAGCTGGTGTTGACC… 30S ribosomal protein S13 rps13
0750_sml0006-sacB ATGAAAGTTAGAGCTTCCGTTAAGA… 50S ribosomal protein L36 rpl36
0751_ssl3441-sacB ATGGAAGGCACGGTGATGGAGTCAT… initiation factor IF-1 infA
0752_sll1815-sacB ATGGCTATGGCTAAAGGTTTAATTT… adenylate kinase adk
0753_sll1814-sacB ATGGTCGTAAGTCGAGACAAAGCCC… preprotein translocase SecY subunit secY
0754_sll1813-sacB ATGAATTTGAGCGAACTCTCTCCCA… 50S ribosomal protein L15 rpl15
0755_sll1812-sacB ATGGCAAAGCGTCGTAAAACCAGCC… 30S ribosomal protein S5 rps5
0756_sll1811-sacB ATGAAAAGCACTCGTAAATCTGCTA… 50S ribosomal protein L18 rpl18
0757_sll1810-sacB ATGTCCCGTATCGGAAAACGCCCCA… 50S ribosomal protein L6 rpl6
0758_sll1809-sacB ATGGCTTCAACAGACACAATTTCCG… 30S ribosomal protein S8 rps8
0759_sll1808-sacB GTGCTCGAGTTCCCTTCGTCCATCT… 50S ribosomal protein L5 rpl5
0760_sll1807-sacB ATGACTAAAACCAAACCAGCCCCCC… 50S ribosomal protein L24 rpl24
0761_sll1806-sacB GTGATTCAACAACAAACCTATCTCA… 50S ribosomal protein L14 rpl14
0762_ssl3437-sacB ATGGCGATTAAAGAACGTGTGGGCA… 30S ribosomal protein S17 rps17
0763_ssl3436-sacB ATGGCTCTTCCCAACATTGCAGACG… 50S ribosomal protein L29 rpl29
0764_sll1805-sacB ATGTTAAGTCCTAGAAGAACAAAAT… 50S ribosomal protein L16 rpl16
0765_sll1804-sacB ATGGGACAAAAAATACATCCAGTTG… 30S ribosomal protein S3 rps3
0766_sll1803-sacB ATGACAAAACTTGATACGACGGCCG… 50S ribosomal protein L22 rpl22
0767_ssl3432-sacB ATGGGTCGTTCACTGAAAAAAGGTC… 30S ribosomal protein S19 rps19
0768_sll1802-sacB ATGGGTATTCGTAATTATCGGCCAA… 50S ribosomal protein L2 rpl2
0769_sll1801-sacB GTGAGTAAGGTAATTGATCAGCGTC… 50S ribosomal protein L23 rpl23
0770_sll1800-sacB ATGGTTGATTGTATTGTAAAAAACT… 50S ribosomal protein L4 rpl4
0771_sll1799-sacB GTGTCTATCGGTATTTTAGGAACAA… 50S ribosomal protein L3 rpl3
0772_slr1894-sacB ATGGCTACGATTAATATCGGCATTC… DNA starvation/stationary phase protection protein mrgA
0773_sll1797-sacB GTGGATGTGATTGACATGGCTCCAG… DUF98 domain-containing protein ycf21
0774_slr1895-sacB ATGCCAAGCAAGGGAAGGGGAAACG… metallophosphoesterase
0775_slr1896-sacB ATGGCTGAAGTTATCCCCAACAATC… DUF1823 family protein
0776_sll1796-codA ATGTTTAAATTATTCAACCAAGCTA… cytochrome c553; petJ petJ
0777_slr1897-sacB ATGGTTTCATGGTGCCGATGGCGAT… sugar ABC transporter substrate-binding protein srrA
0778_slr1898-sacB ATGAGCAGTACCCAAGATTATATCG… N-acetylglutamate kinase argB
0779_slr1899-sacB GTGGGAGCCTACAACTATTCCGAAG… urease accessory protein F ureF
0780_slr1900-sacB ATGGGGAGTTATAGCCAATTAGACC… Cyanobacterial Signature Protein
0781_slr1901-sacB GTGGTGGAAAATTTGAGCAAGGTTT… ABC transporter
0782_slr1902-sacB ATGTCTACACACTGTCACTGTCCTC… transposase
0783_slr1903-sacB GTGGCATTTTCTCCAGGCAAAAAAA… transposase
0784_sll1792-sacB GTGAAAGGACGAAAGCGTCATCTAA… transposase
0785_sll1791-sacB ATGAAAAGTCTGACAGCCTATGAAA… transposase
0786_sll1789-sacB ATGACGTTTTATAACTACACCATCG… RNA polymerase beta prime subunit rpoC2
0787_sll1787-sacB ATGACAAACCTTGCCACCACGATGT… RNA polymerase beta subunit rpoB
0788_sll1786-sacB ATGCATTTAGTTGATACCCATGTCC… YchF/TatD family DNA exonuclease
0789_ssl2233-sacB GTGGCTAATATCAAGTCCGCCCTGA… 30S ribosomal protein S20 rps20
0790_sll1124-sacB ATGACTTTTGCCGCCACTCCCAGGG… sensory transduction histidine kinase hik3
0791_sll1123-sacB GTGCTATTTTTGTGCAACTTGCTTT… hypothetical protein
0792_sll1121-sacB ATGGGTAGATTGAGGGGAACACTAA… ATP-dependent helicase
0793_sll1120-sacB ATGGTTTATGTCAAGCGCATCGAAC… chromosome segregation protein SMC1 smc
0794_sll1119-sacB ATGCCCCCCCTGCAACTACTCCGAT… phosphotransferase enzyme family protein
0795_slr1194-sacB ATGGCCAATCGTACCCAAAGTCGTT… DUF533 domain-containing protein
0796_slr1195-sacB ATGGAAGTGCAATTTCGGGAAGTAA… DUF3531 family protein
0797_slr1196-sacB ATGTATCCATCCTCGTCCCCGGGCC… hypothetical protein
0798_slr1197-sacB ATGGCGAATTCTGAACAGGCCTATT… DNA-protecting protein DprA dprA
0799_sll1118-sacB ATGCTGACTTCCACAACGGATATTG… YbjQ family protein
0800_ssr2009-sacB ATGCTACCACCTCTAAAAAATCCAA… DUF2442 domain-containing protein