Plasmids and Cultures

This database contains entries for 3,572 known and predicted gene coding sequences in Synechocystis sp PCC 6803 based on the Kazusa genome sequence and nomenclature (http://genome.microbedb.jp/cyanobase/GCA_000009725.1). Plasmids for generating marked mutants and mutant strains can be searched for by gene Name/Accession (e.g. 'sll1226' or '1513_sll1226-sacB'),  gene homology (e.g. 'hydrogenase large subunit'), Gene ID (e.g. hoxH), or by a portion of the gene coding sequence Sequence (CDS).

Please note, the library is still being completed. Plasmids and/or marked mutants may not be available. Users can also search for available materials by Plasmids made or Mutant made.

Plasmids, mutants and the unmarking spacer plasmid pUC19K-UL are currently available on request. Regardless of the segregation status of the mutant, open reception of a cyanobacterial mutant strain we recommend 1-2 cycles of restreaking on a selection plate containing kanamycin (100 μg/ml).

Name Sort ascending CDS Gene Homology Gene ID
1772_slr1174-sacB ATGGGTCATTTTCCCCACAAACTGC… multidrug ABC transporter permease
1771_ssr1951-sacB ATGGATCCCTTAACCAAATTAGTTT… Hypothetical protein
1770_slr1173-sacB ATGGATAAAGCCATTCGGAAAATTT… DUF2330 domain-containing protein
1769_sll1086-sacB ATGTTACTTTTCCTACTTCCAGGCA… hypothetical protein
1768_sll1087-sacB ATGGGCATGATTGACTGGGCCATTG… sodium-coupled permease
1767_sll1089-sacB ATGAAGTACTCACTATTTGTCGCTA… hypothetical protein
1766_slr1171-sacB ATGACTGCCCAAGCCAACAACACAA… glutathione peroxidase
1765_slr1170-sacB GTGTCCCCACCATTGCCGCTGTTAC… TMEM165/GDT1 family protein
1764_slr1169-sacB ATGCAAGGTTTACTGCTCATTTTTT… DUF1049 domain-containing protein
1763_slr1168-sacB ATGTTAACCGTTACTAATTATCCCC… DUF433 domain-containing protein
1762_slr1167-sacB ATGGCCCCATCAATTTCCCCTGTCA… glycerol dehydrogenase gldA
1761_sll1091-sacB ATGGTGGATGAGTTTGATCTGCCCC… 43 kD bacteriochlorophyll synthase subunit chlP
1760_ssl2138-sacB ATGACTACTGAAGCTGCCCTATTAA… DUF2281 domain-containing protein
1759_sll1092-sacB ATGAATTCTGTTTTGATAGACACCC… type II toxin-antitoxin system VapC family toxin
1758_slr1166-sacB ATGCGCCTACTATTTGTTTCTAGTC… glycosyltransferase
1757_slr1165-sacB ATGACCACTTCCCTTGCAGCCATTG… sulfate adenylyltransferase met3
1756_slr1164-sacB ATGCATCCCACCCTCATCAGCGCCC… ribonucleotide reductase subunit alpha nrdA
1755_ssl2148-sacB ATGTTTGCTCTACCCATCCTGGCGG… hypothetical protein
1754_slr1163-sacB ATGACTTTTTATTATTTGCTTTTTG… porin
1753_slr1162-sacB ATGGATAAATACTCTAATCCAGAGA… hypothetical protein
1752_slr1161-sacB ATGTCATTTTCAGAATCTAAAATTA… nucleoside deaminase
1751_sll1094-sacB ATGATATTTGAAGGATACTGCAACG… transposase
1750_ssl2153-sacB GTGGCCGGTCAAACCGTAGAGGAAG… ribose phosphate isomerase B rpiB
1749_slr1160-sacB ATGCTTCAACGTCTTGTGCACATAT… Cyanobacterial Signature Protein
1748_slr1159-sacB ATGAAAGTGGCAGTTATTGGTAGCG… phosphoribosylamine--glycine ligase purD
1747_sll1095-sacB ATGGCTGAACAGCATTTAATTATTT… DUF2064 domain-containing protein
1746_sll1096-sacB ATGCCAACTATCCAGCAGCTAATTC… 30S ribosomal protein S12 rps12
1745_sll1097-sacB ATGTCTCGTCGTGGCAATGTCAAAA… 30S ribosomal protein S7 rps7
1744_sll1098-sacB ATGGCTCGCACAGTGCCCCTAGAAC… elongation factor EF-G fusA
1743_sll1099-sacB ATGGCACGCGCAAAATTTGAACGGA… protein synthesis elongation factor Tu tufA
1742_sll1101-sacB ATGGCAACATTGCAACAACAAAAAA… 30S ribosomal protein S10 rps10
1741_sll1102-sacB GTGGACAAATTACTCAAAATTGCCC… TRAP transporter small permease subunit
1740_sll1103-sacB ATGGTGGACTACGATTGGTTAGGGC… TRAP transporter large permease subunit
1739_sll1104-sacB GTGTTCAATAAAGTAATTAATTTTC… glutamine-binding protein glnH
1738_ssl2162-sacB ATGCAATCCTCACAGACCTGGGCGA… hypothetical protein
1737_slr1152-sacB GTGCTTTCATTGATCAAAATTGCCG… pentapeptide repeat-containing protein
1736_slr1534-sacB ATGTCTTCCCTGCCCAAAAATTTTC… LD-carboxypeptidase
1735_slr1533-sacB ATGACAGCTCCCCTAACCCTCAACT… hypothetical protein
1734_sll1432-sacB ATGTGCCAAAACTGCGGTTGTAGTG… hydrogenase isoenzymes formation protein; HypB hypB
1733_sll1433-sacB ATGGCAGTGACGTCTCCATGGTTCC… NAD(P)H-hydrate dehydratase
1732_sll1434-sacB GTGTCATCCACTAGCACCCTAAAAC… penicillin-binding protein 1B mrcA
1731_sll1435-sacB GTGAGGGAGAAAAGTGCCCGTTGGA… Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit gatB/pet112
1730_sll1436-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
1729_sll1437-sacB ATGTTAAGAGAACTAATTAAGCTCT… transposase
1728_slr1531-sacB ATGTTTGATGCCTTAGCCGATCGCC… signal recognition particle protein ffh
1727_sll1439-sacB ATGGATAATTCAGAGCAATGGTACA… hypothetical protein
1726_slr1530-sacB ATGACACCATCTGCGGCGAGTCATG… segregation/condensation protein A
1725_sll1440-sacB ATGTTAACTGCCCGCTGTGAAGATC… pyridoxamine 5-phosphate oxidase pdxH
1724_sll1441-sacB GTGCGTCTAGAAATTTCATCGCCTC… delta 15 desaturase desB
1723_slr1529-sacB ATGACCGATCGCCTTTCCTATTTGC… nitrogen assimilation regulatory protein
1722_sll1442-sacB ATGAAATTGCCCTACGGAAACCAAG… hypothetical protein
1721_sll1443-sacB ATGTCGAAGTTTGTTTTTGTGACTG… CTP synthetase pyrG
1720_sll1444-sacB ATGAGCCAAGTTAAACAAATCCAGG… 3-isopropylmalate dehydratase leuD
1719_sll1446-sacB ATGGAAACTGAGCAACTTCTTTGGC… hypothetical protein
1718_sll1447-sacB ATGAGAATGCTATCGGTGTTTGGGG… DUF4359 domain-containing protein
1717_sll1166-sacB ATGACTCAGTTAATTAAATCTTTAC… AI-2E family transporter
1716_slr1288-sacB GTGTCTTCATCCAATAGTCCTTCCG… 6S RNA ssaA
1715_slr1287-sacB GTGGGGGCGGCCCTTGGTGGTTACG… DUF3326 domain-containing protein
1714_ssr2130-sacB ATGACGACCCATTTCATCACTGCTG… hypothetical protein
1713_sll1167-sacB GTGGGGGCAGTGTTATGGGGGGAAA… penicillin-binding protein 4 pbp
1712_slr1285-sacB GTGAATGAAGTTTGCCTAAAGTTGA… sensory transduction histidine kinase
1711_sll1169-sacB ATGACCAATAATCCTCCCATAAAAT… Crp/Fnr family transcriptional regulator
1710_sll1170-sacB ATGTCCTCCTATCTTGTCAACGAAA… diguanylate cyclase
1709_slr1283-sacB ATGTACGATACTAAAAGTCCAGTAT… transposase
1708_slr1282-sacB ATGGCTTACGATCTTGATTTACGTA… transposase
1707_slr1281-sacB GTGGCTGAGGAAGTGAACTCCCCCA… NADH dehydrogenase subunit I ndhJ
1706_slr1280-sacB ATGAGTCCCAACCCTGCTAACCCCA… NADH dehydrogenase subunit; NdhK ndhK
1705_slr1279-sacB GTGTTTGTTTTAACCGGTTACGAAT… NADH dehydrogenase subunit 3 ndhC
1704_sll1172-sacB ATGATTTCTTGTCATTCTTTCACCA… threonine synthase thrC
1703_slr1278-sacB ATGGCTTGGACATTACTGCACAGTA… tRNA lysidine(34) synthetase tilS
1702_sll1173-sacB ATGGCCCAGGCTCTGTTGAATAACG… FkbM family methyltransferase
1701_sll1174-sacB ATGCGCGTTGAACCCTGTTGCCAAG… FkbM family methyltransferase
1700_slr1277-sacB GTGAGGAGCAATTCTGTGAAAAATT… type IV pilus secretin PilQ gspD/pilQ
1699_slr1276-sacB ATGACCAGCTACAGCGAAGAGTATT… Cyanobacterial Signature Protein (pilus assembly protein) pilO
1698_slr1275-sacB ATGTATAGCCTAGATGTAAATTTTC… pilus assembly protein PilN pilN
1697_slr1274-sacB ATGTTTAGCCGTTTTACCAGCTTAT… membrane protein pilM
1696_slr1273-sacB ATGTTTTTAACTGCTCTGCGGTCTT… hypothetical protein
1695_slr1272-sacB ATGATTAACCGATCGATGAAATCTT… S-layer homology domain-containing protein
1694_slr1271-sacB ATGGTCACCAACTTTGCTGAGCCAA… UDP-N-acetyl-D-mannosaminuronic acid transferase rffM
1693_slr1270-sacB ATGAAATCAATCCATCCGCTCAAAT… TolC family protein
1692_slr1269-sacB ATGGCGGGTAAAACCACTGGGGTTG… gamma-glutamyltranspeptidase ggt
1691_slr1267-sacB ATGATCACCGCCGCCAATTTGCTCC… rod-shape-determining protein mrdB
1690_slr1266-sacB ATGTCGAAGAATTTTAACTTGCTAT… DUF2808 domain-containing protein
1689_sll1178-sacB GTGACTCATATTCTTGGCATTTCTG… nodulation protein
1688_slr1265-sacB ATGAAAGCCCAATCAGAACCTCGGT… RNA polymerase gamma-subunit rpoC1
1687_sll1180-sacB ATGAGTCTGACCATTGCCGATTATC… HlyB family hlyB
1686_sll1181-sacB ATGAATAGCCCCACCCAGGAACATG… HlyD family of secretion proteins hlyD
1685_sll1182-sacB ATGGTCAAACGACGCAAGCTAATTT… cytochrome b6/f complex iron-sulfur subunit petC3
1684_sll1369-sacB ATGGTGAGAATCTTTGGGGCGACGG… sll1369
1683_sll1370-sacB GTGGAAATCCCTGGCCAGTCAATTT… GDP-mannose pyrophosphorylase rfbM
1682_sll1371-sacB ATGGGCACTAGTCCCCAAAATTCAG… catabolite gene activator protein
1681_sll1372-sacB ATGACTTTTTCTGCTGACCGATCGC… DUF2232 domain-containing protein
1680_sll1373-sacB ATGGGCCTGCTATTTCTGAAACTAA… hypothetical protein
1679_sll1374-sacB ATGAGCCAATCCCTTTCCGCCGAAA… melibiose carrier protein melB
1678_sll1376-sacB ATGGCAATGGCTTGGTTAATGGGGT… bifunctional sterol desaturase/short chain dehydrogenase
1677_slr1478-sacB ATGGATTTTCGTCGCTGGATTGCCC… stage II sporulation protein M
1676_sll1377-sacB ATGCCCCAATTTCCGTGGAAAGATA… glycosyltransferase family 2 protein
1675_sll1378-sacB ATGGCATTAACCATGCCACGATTTT… DUF1838 domain-containing protein
1674_slr1476-sacB ATGACCATGGTGGCCAGTTGGACTC… aspartate carbamoyltransferase pyrB
1673_sll1380-sacB ATGACCACCGCAACCCATTTGCTGA… GUN4 domain-containing protein
1672_sll1381-sacB ATGGCCAATTTAGAAACCTATGTGC… hypothetical protein
1671_slr1474-sacB ATGGCGAGTGGAAATAAGTTTCAGT… NlpC/P60 family protein
1670_sll1382-sacB ATGTCCCGTTCCCACCGAGTTCTGA… ferredoxin petF
1669_sll1383-codA ATGACTTCTGCCCAAAAACCCGTTT… extragenic suppressor; suhB suhB
1668_sll1384-sacB ATGAGCTCGTTTCCCATCAAGCAAG… J domain-containing protein
1667_slr1472-sacB ATGGAAAAAATAGTTACCCAAGCCC… protein jag
1666_slr1471-sacB ATGGATTTTGGTATCGGTTTTATTT… membrane protein insertase yidC
1665_slr1470-sacB ATGGGCATTCGAGAAACCACTTATT… PH domain-containing protein
1664_slr1469-sacB GTGGGACTACCCAAAACACTGCGCT… protein subunit of ribonuclease P rnpA
1663_smr0011-sacB ATGACTCAACGAACCCTCGGCGGAA… 50S ribosomal protein L34 rpl34
1662_slr1468-sacB ATGGCTTTTTGGCTGATGAAGTCCG… tymocyte protein cThy28kD
1661_slr1467-sacB ATGGTATGGAGGCATTTCACCCCCT… precorrin isomerase
1660_sll1386-sacB ATGGTCAATTTTCGTCGCCGGGCTC… ComEA family DNA-binding protein
1659_sll1387-sacB ATGCCCAATCCTCGACGCATTGTCT… serine/threonine protein phosphatase
1658_smr0010-sacB GTGATCGAACCCCTATTGCTCGGCA… PetG subunit of the cytochrome b6f complex petG
1657_sll1388-sacB ATGGGCTACGGAAAGATTTTAGTTG… universal stress protein
1656_sll1389-sacB ATGACGGATTTACCCCATTCCCCGG… hypothetical protein
1655_ssl2717-sacB ATGGAAAAAATTTGGGTCAATGAAC… hypothetical protein
1654_sll1390-sacB GTGGAGTTTCACCGGCAATTGCCCA… YgcG family protein
1653_sll1866-sacB GTGCCCCTAGTTAGTCAATCGGATT… Sua5/YciO/YrdC/YwlC family protein
1652_sll1867-sacB ATGACAACGACTCTCCAACAGCGCG… photosystem II D1 protein psbA3
1651_sll1868-sacB ATGGATAACCTCCGTCTGCATCCAG… DNA primase dnaG
1650_slr1984-sacB ATGCCTTCTTCCTCCAACAGTGCAG… 30S ribosomal protein S1 rps1
1649_sll1869-sacB ATGAGCGCTCTTTCTTCCCATAGTC… 3-chlorobenzoate-34-dioxygenase cbaB
1648_sll1870-sacB ATGACTTCTTTGATTAAATTAATCG… methionine ABC transporter ATP-binding protein
1647_slr1983-sacB ATGATGAATCCTTCTATTAATTCAG… regulatory components of sensory transduction system
1646_slr1982-sacB ATGGAATCTATGGCTAAGGTTCTCC… response regulator
1645_sll1871-sacB ATGGTCTCAATTATTAAGTCGGTGC… sensory transduction histidine kinase
1644_sll1872-sacB GTGATGGCTAAAAATTCTAATAAAC… LytR family transcriptional regulator lytR
1643_sll1873-sacB ATGTTAAAAAAATTGTTTGGCGCTA… hypothetical protein
1642_sll1874-sacB ATGGTATCCACTACCCTACCGACTC… magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase acsF
1641_sll1875-sacB ATGACTAACCTTGCACAAAAACTCC… heme oxygenase ho2
1640_sll1876-sacB ATGACCACCACATTTCCTACTGTTG… oxygen independent coprophorphyrinogen III oxidase hemN
1639_slr1980-sacB ATGGTTAGAATCATTGCAAAAAGCC… hypothetical protein
1638_slr1979-sacB GTGGCATCAATTGCGCATTGTTCGG… anthranilate synthase component I trpE
1637_slr1978-sacB ATGGACTTGATGCGGTCTTTACCCA… hypothetical protein
1636_slr1977-sacB ATGATTTCAGCCGACCTCAATCCCC… hypothetical protein
1635_sll1878-sacB ATGACAGTCGCCCAATTTTCTCCCG… ABC transporter futC
1634_sll1879-sacB GTGAGTGAATCTCCCTTAACCATTG… DUF3685 domain-containing protein
1633_sll1880-sacB ATGATCTCCTCTGCCGCTACTTTTC… YjbQ family protein
1632_slr1975-sacB ATGATTGCCCATCGCCGTCAGGAGT… AGE family epimerase/isomerase
1631_sll1882-sacB GTGTTGCCTGCCATGATTTGTTTCC… tetratricopeptide repeat protein
1630_sll1883-sacB ATGTGGCAGGCTTTTCCTATGGCTG… ornithine acetyltransferase argJ
1629_sll1884-sacB GTGCCCATGACCCGTTCCATCCCTA… hypothetical protein
1628_slr1974-sacB ATGTCCCTTCCCATCGTCGCCATTA… ribosome biogenesis GTPase Der
1627_sll1885-sacB GTGAGGAACAACCGCATGACTTTCA… hypothetical protein
1626_sll1886-sacB ATGCGAATTTGGCCAGTGGTGCTGA… hypothetical protein
1625_slr1972-sacB ATGTTAGACGCCGTCATTATTCTCC… PIN/TRAM domain-containing protein
1624_ssl3549-sacB ATGAATGACAATACCACCGCCTCGC… hypothetical protein
1623_sll1888-sacB ATGGGACAGCCGAGCGATTTGACGG… sensory transduction histidine kinase hik8
1622_slr1971-sacB ATGGGTTTTCGTCGCTATCAAAGTT… hypothetical protein
1621_slr1970-sacB ATGAGCATCCAAGAAATCTTTACCA… hypothetical protein
1620_ssr3341-sacB ATGAGCAGATTTGATAGCGGATTAC… RNA-binding protein hfq hfq
1619_slr1969-sacB ATGCTACCCGCTTTTTCCCCCATTT… hybrid sensory kinase
1618_sll1890-sacB ATGCATCGTCTTGCTAGTCTTCCCG… CobN protein cobN
1617_sll1891-sacB ATGGTTAATCATCCCTTGCCGCTTT… DUF928 domain-containing protein
1616_slr1968-sacB GTGGTCATGGCAGTGCGTTTTTTGT… CHAT domain-containing protein
1615_sll1892-sacB ATGATTACCCCACCCAGCTCACCCA… hypothetical protein
1614_sll1893-sacB ATGACCTTAGCAAAACGGATTTTGC… cyclase hisF
1613_slr1966-sacB ATGATTGACCGCGAATTTTTGCTTG… glycoside hydrolase
1612_sll1894-sacB ATGTTTGATGCCATTGATGCAGCCC… GTP cyclohydrolase II ribA
1611_slr1964-sacB GTGGGCTTCTCGTTGCAGAGCAGGC… hypothetical protein
1610_slr1963-sacB ATGCCATTCACCATTGACTCTGCCC… orange carotenoid-binding protein
1609_sll1895-sacB ATGCTTTATCAATTGGTCGTTGATT… EAL domain-containing protein
1608_slr1962-sacB ATGAAACGCCGTCAACTCCTTGGCC… C4-dicarboxylate ABC transporter
1607_ssl3573-sacB GTGATTGTTGATCAACCTAATGGCG… hypothetical protein
1606_sll1897-sacB ATGGCCTACTGGTTATTTCAAGGCA… EVE domain-containing protein
1605_slr1959-sacB ATGGATAAACCCAGTTCCTTTTTCG… hypothetical protein
1604_sll1898-sacB GTGACTGGGGTTTTTCTCCCCCCCT… heme A synthase
1603_sll1899-sacB ATGGTTACTTCGACAAAAATCCATC… cytochrome c oxidase folding protein ctaB
1602_ssl3580-sacB ATGTGTCTAGCCCTACCTGGCCAGG… hydrogenase expression/formation protein; HypC hypC
1601_sll1900-sacB ATGTACGGCCCAGATCCCCAAAATA… Vat family streptogramin A O-acetyltransferase act/vat
1600_slr1958-sacB ATGGCTGATTCCATCACCCCAGACT… GUN4 domain-containing protein
1599_slr1957-sacB ATGAGACATTTTTGCGACGCTTGGA… hypothetical protein
1598_slr1956-sacB ATGGTTAACCATGGTTATCCCCTAG… tetratricopeptide repeat protein
1597_sll1242-sacB ATGCGCGCCCTATTAATCTATCCGT… B12-binding domain-containing radical SAM protein
1596_slr1353-sacB ATGCCAATGTCCAGTCTGATTTCCC… hypothetical protein
1595_sll1244-sacB ATGGAGGTTTGTGAATTGCTCCACA… 50S ribosomal protein L9 rpl9
1594_sll1245-sacB ATGGCCCCTGTAATCGAAAAAAGTC… cytochrome; CytM cytM
1593_slr1351-sacB ATGAACTCCAAACTTTCCCTATTTG… UDP-N-acetylmuramoylalanyl-D-glutamyl-2 6-diamino-pimelate-D-alanyl-D-alanine ligase murF
1592_sll1247-sacB GTGTCTTTGACCTTATCTCATGATT… hypothetical protein
1591_slr1350-sacB ATGACTGCCACGATTCCCCCGTTGA… fatty acid desaturase desA
1590_slr1349-sacB ATGAATAACCAACAACTTTGGCAAC… glucose-6-phosphate isomerase pgi
1589_slr1348-sacB GTGCTGAATTCACTAATTGCTGACT… serine acetyltransferase cysE
1588_slr1347-sacB ATGGCCGAAGTTTCATTGATATCCC… carbonic anhydrase icfA
1587_sll1249-sacB ATGGTGCAGGTTTTTCGCACAATCG… pantothenate synthetase/cytidylate kinase panC/kcy
1586_sll1250-sacB GTGGAGTGTCGAGGCGAATCTAAAA… Endonuclease, Uma2 family
1585_ssl2471-sacB ATGGGTTGGTTGATTAATCCGAAAG… Endonuclease, Uma2 family
1584_sll1251-sacB ATGCCCTCCCACCCATCCCGCAGTA… Uma2 family endonuclease
1583_slr1344-sacB ATGCGCCTATGGTTTCGTCCCCCCT… ABC transporter permease
1582_sll1252-sacB ATGTTACCAAGAGAAGCTTTGTTAA… photosystem II S4 domain protein
1581_sll1253-sacB ATGGATTTAATTCTTTGCCATCAAA… polyA polymerase pcnB
1580_slr1343-sacB ATGACCATTGGCATTTGGATATTGG… cryptochrome/photolyase family protein
1579_slr1342-sacB ATGGCTGACCCCACCAAAATCATTG… four-carbon acid sugar kinase family protein
1578_sll1254-sacB ATGCTGGAAATTGTAGCGGCCATTT… hemolysin
1577_sll1255-sacB ATGATATCAAATTTTGGACATATTG… transposase
1576_slr1340-sacB ATGATTGACATTGTAAAAGCAGATC… GNAT family N-acetyltransferase
1575_slr1339-sacB ATGCTATTGAGGATTGAAACCAGAT… hypothetical protein
1574_slr1338-sacB ATGTCAAACCAACGGGATTACACGC… VWA domain-containing protein
1573_sll1256-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase