Plasmids and Cultures

This database contains entries for 3,572 known and predicted gene coding sequences in Synechocystis sp PCC 6803 based on the Kazusa genome sequence and nomenclature (http://genome.microbedb.jp/cyanobase/GCA_000009725.1). Plasmids for generating marked mutants and mutant strains can be searched for by gene Name/Accession (e.g. 'sll1226' or '1513_sll1226-sacB'),  gene homology (e.g. 'hydrogenase large subunit'), Gene ID (e.g. hoxH), or by a portion of the gene coding sequence Sequence (CDS).

Please note, the library is still being completed. Plasmids and/or marked mutants may not be available. Users can also search for available materials by Plasmids made or Mutant made.

Plasmids, mutants and the unmarking spacer plasmid pUC19K-UL are currently available on request. Regardless of the segregation status of the mutant, open reception of a cyanobacterial mutant strain we recommend 1-2 cycles of restreaking on a selection plate containing kanamycin (100 μg/ml).

Name Sort ascending CDS Gene Homology Gene ID
1572_sll1257-sacB ATGTTAAGAGAACTAATTAAGCTCT… transposase
1571_sll1258-sacB ATGATTAAGAATGATATTTGGATCC… dCTP deaminase
1570_slr1336-sacB ATGTCCACCAAAAGTAAGATTTTTC… H+/Ca2+ exchanger
1569_sll1260-sacB ATGCCCGTAGTTTCTCTCGCAGATT… 30S ribosomal protein S2 rps2
1568_sll1261-sacB ATGGCAGAAATTACCGCTCAACTCG… elongation factor TS tsf
1567_sll1262-sacB ATGTTGCCATTGCCATTAATTGCTA… NAD(P)H-quinone oxidoreductase subunit N
1566_sll1263-sacB ATGACCGCCCGTCTTGCCCGTCCCT… transporter
1565_ssl1498-sacB ATGAACAACTATACTAAAGACGATG… ssl1498 family light-harvesting-like protein
1564_sll0802-sacB ATGGGGCAAAAAACTACAACTTTGT… DUF29 domain-containing protein
1563_sll0803-sacB ATGAATACCCCCTCTTCGACCCAAC… DUF29 domain-containing protein
1562_sll0804-sacB ATGAATTCCCCTGCCCCTGATCCGG… DUF697 domain-containing protein
1561_slr0823-sacB ATGCCCCGCACCCAACGTAACGATA… photosystem I assembly protein Ycf3 ycf3
1560_slr0822-sacB ATGTCTGACCCTGATGTGTCCGTCT… cation-transporting ATPase; E1-E2 ATPase
1559_sll0807-sacB ATGTCCAAAAATATCGTCGTTGCTC… pentose-5-phosphate-3-epimerase cfxE
1558_slr0821-sacB GTGGTTTCACCGGCTTTGCCCCGGT… MoaD/ThiS family protein
1557_sll0808-sacB ATGGCTTACGATCTTGATTTACGTC… transposase
1556_ssl1507-sacB ATGAATAACGCCCCCATTCATCGAA… transposase
1555_slr0820-sacB ATGAATAAGTGGTTTAGTAAAAAGT… glucosyltransferase
1554_ssr1391-sacB GTGAAAAATACTGAAAACATAATGG… glutaredoxin family protein
1553_slr0819-sacB ATGGGTTTGGCAACGGCTCCTTTAG… apolipoprotein N-acyltransferase int
1552_slr0818-sacB ATGGGGGAAACTGTCATGCGTCTCA… hypothetical protein
1551_slr0817-sacB ATGTCCGTTGCGACACCCCTCCTCG… isochorismate synthase entC
1550_sll0809-sacB ATGGCCTTGGATCAATGGTTATTGG… lipoate--protein ligase family protein
1549_sll0810-sacB GTGAGCCATAACCGAATTAAACGTT… IS701 family transposase
1548_sll0811-sacB GTGCAACTGTTCCGAGTTACGGTGT… IS4 transposase
1547_slr0816-sacB ATGGTTATACAGCCCATTTACTTAC… DUF177 domain-containing protein
1546_slr0815-sacB GTGTTTTTTTGTTGCCCATTGTTCC… DUF3007 family protein
1545_ssr1386-sacB ATGGAAGATTTATTAGGTTTGCTAC… NADH dehydrogenase subunit; NdhL ndhL
1544_sll0812-sacB ATGGGTTCCCCAGAATTTTCTCCTA… hypothetical protein
1543_slr0813-sacB GTGAATCTTGGCCAATGGGGGGAAA… ceramide glucosyltransferase
1542_slr0812-sacB GTGGAAACATCAAAGCCGGGTTGTG… type III pantothenate kinase
1541_sll0813-sacB ATGAGTCGCAAAAATCTCATCCTAT… cytochrome c oxidase subunit II ctaC
1540_sll0814-sacB ATGGAAAAACTAATGCGGATTGAGC… carotenoid biosynthesis protein
1539_sll0815-sacB ATGGCACGACAAGCTCGCTATCAAA… slipin family protein
1538_sll0816-sacB ATGACTAAATCCCCAAACCTAACCG… oxidoreductase
1537_sll0817-sacB ATGGCCAAAGTTCCGCCCCTGATTG… tRNA delta-2-isopentenylpyrophosphate (IPP) transferase miaA
1536_ssl1520-sacB ATGGCCATGGATAAGGATACGAAAT… hypothetical protein
1535_sll0818-sacB ATGGGCATTCTTTATTTGGTGGCCA… 16S rRNA (cytidine(1402)-2'-O)-methyltransferase rsml
1534_slr0810-sacB ATGCAATTAATCTCTGGCTTTGTGG… DUF4351 domain-containing protein
1533_slr0809-sacB ATGCCCAGCCATTTGCCAAATGCTA… dTDP-glucose 4-6-dehydratase rfbB
1532_slr0808-sacB ATGGCAGAACCCATGACAGAACAAC… ribosome maturation factor RimM rimM
1531_slr0807-sacB ATGGCAATCATTTTAGCAATTGAAA… tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD gcp/tsaD
1530_sll0819-sacB ATGAAACATTTGTTGGCGTTGCTCC… photosystem I subunit III psaF
1529_sml0008-sacB ATGGACGGTTTGAAATCCTTTTTGT… photosystem I subunit IX psaJ
1528_slr0806-sacB ATGGATTGGTCAGCCATTGCGGCTT… FAD-binding oxidoreductase glcD2
1527_slr0804-sacB ATGGTTCGCGGTTCTGAACTTTATT… D-alanyl-D-alanine carboxypeptidase dacB
1526_ssr1375-sacB GTGTCAGCTACCCAGGTAGACGTTT… hypothetical protein
1525_sll1217-sacB ATGTCAGAGCTTCAAACCCTGATCC… hypothetical protein
1524_sll1218-sacB ATGAAAGTTTTAGTTATCGGCGCCA… SDR family oxidoreductase ycf39
1523_sll1219-sacB ATGCACTACGCCATCCCCAAAACCT… hypothetical protein
1522_slr1334-sacB ATGGTTTACACTCCTGCTCCGATTA… phosphoglucosamine mutase
1521_ssr2227-sacB ATGCCATCTTTTATTTACAGCGCAC… transposase
1520_sll1220-sacB ATGACCGTTGCCACCGATCGCCAAA… bidirectional hydrogenase complex protein HoxE hoxE
1519_sll1221-sacB ATGGACATTAAAGAATTAAAGGAAA… hydrogenase subunit hoxF
1518_sll1222-sacB ATGAATGTTTTAACTGCTCCCATCA… Uma2 family endonuclease
1517_sll1223-sacB ATGTCTGTTGTTACTTTAACCATTG… hydrogenase subunit hoxU
1516_sll1224-sacB ATGGCTAAAATTCGTTTTGCTACCG… hydrogenase small subunit hoxY
1515_ssl2420-sacB ATGAATACCCAATTAGTAGAATCCT… hypothetical protein
1514_sll1225-sacB ATGACCAACCAAACTTCTTTCACAA… PIN domain-containing protein
1513_sll1226-sacB ATGTCTAAAACCATTGTTATCGATC… hydrogenase large subunit hoxH
1512_slr1332-sacB ATGGACCGCCAGGGGAAACAAAAAA… beta ketoacyl-acyl carrier protein synthase fabF
1511_slr1331-sacB ATGTCCGATCGCCTTGTTTGCCCTA… processing protease ymxG
1510_slr1330-sacB ATGACCATTGCCTGTTATCCCCCTT… ATP synthase e subunit atpE
1509_slr1329-sacB ATGGTAGCCGTAAAAGAAGCAACTA… ATP synthase b subunit atpB
1508_sll1228-sacB GTGCGTTTTGCCATAGAGCAACTGG… hybrid sensory kinase hik4
1507_sll1229-sacB ATGGGCCCGGACTGTAAAACCCTTT… hybrid sensory kinase hik41
1506_sll1231-sacB GTGATGCTAAAAGTTTGTGTGGATG… Mannosyltransferase B mtfB
1505_sll1232-sacB ATGCTGCAAATTGCACCCCCATCGA… Uma2 family endonuclease
1504_sll1233-sacB ATGGCAACCTATCGCATTGAACATC… transglutaminase family protein
1503_slr1327-sacB ATGAACAATGAAGTTATCCGGGTTG… putative toxin-antitoxin system toxin component%2C PIN family
1502_ssr2201-sacB ATGCACTCATTGTCATCACTGGAAT… hypothetical protein
1501_sll1234-sacB ATGGTAGCAACGCCCGTTAAACAGA… S-adenosylhomocysteine hydrolase ahcY
1500_slr1325-sacB ATGAATGCCGTCGCCGCTCTGCCCA… (p)ppGpp 3-pyrophosphohydrolase spoT
1499_sll1236-sacB ATGTCGTCTACGCTACCACTCGATT… hypothetical protein
1498_ssr2194-sacB ATGTTTGCCTCCACCAACTACACCT… hypothetical protein
1497_slr1324-sacB GTGGAAGTAGAATACAGTGGAGTGT… hybrid sensory kinase
1496_sll1237-sacB ATGAATAAGGGCTTTGTCTCCGGTG… protoporphyrinogen oxidase hemK, prmC
1495_slr1322-sacB ATGCCTCCTACTCTGCTCCTCTCCC… metalloprotease
1494_sll1239-sacB GTGACCAATAATTTGACTTCAGACC… hypothetical protein
1493_sll1240-sacB ATGAATAATCATATTCAGGAAGATT… hypothetical protein
1492_sll1241-sacB ATGGGTATTACATCAAAAATATTTG… hypothetical protein
1491_slr2131-sacB ATGTTCGTTGATTTTTTCATTAAGC… cation or drug efflux system protein
1490_slr2130-sacB ATGGCCACCACTATCCCCGTTCCCC… 3-dehydroquinate synthase aroB
1489_sll1994-sacB ATGTTTCCCACCATCCGTCCCCGTC… porphobilinogen synthase hemB
1488_sll1995-sacB ATGCTTGAAGCACCTTTGTTAAGTA… glycosyltransferase family 2 protein
1487_slr2128-sacB ATGATTTCTAACCCTTCTGTCCCAA… DUF29 domain-containing protein
1486_slr2127-sacB ATGGCCACCACCCCCCAAGAAGTCT… hypothetical protein
1485_slr2126-sacB ATGTTTTTCATGCAAAATACTAAGT… glycosyltransferase family 2 protein
1484_slr2125-sacB ATGACGAAAAACACAACCGTAGAGC… DUF115 domain-containing protein
1483_slr2124-sacB ATGAAACCAGTTGTTCTTATCACCG… short-chain alcohol dehydrogenase family
1482_slr2123-sacB ATGAAATGGAAAGTTTTAGTAACCT… D-isomer specific 2-hydroxyacid dehydrogenase family
1481_slr2122-sacB ATGAACTCTGTAAAAATTGCGGCCC… acylneuraminate cytidylyltransferase
1480_slr2121-sacB ATGACTGCTTACCACCTAATTGATA… cyclase family protein
1479_slr2120-sacB ATGCCCCTTGTCTCCCTAATTATTC… glycosyltransferase
1478_slr2119-sacB ATGAGTTTTTCTGAACATCATCTTG… FkbM family methyltransferase
1477_slr2118-sacB GTGGACATGAAATATCCTAGGATTT… glycosyltransferase family 1 protein
1476_slr2117-sacB ATGCTAATCACAAAACAATTATTCT… DUF115 domain-containing protein
1475_slr2116-sacB ATGAACGAAGAAAAACAACAAGAAT… spore coat polysaccharide biosynthesis protein; SpsA spsA
1474_slr2115-sacB ATGTTCATGCAGAAAATACAAGCCA… beta-3-deoxy-D-manno-oct-2-ulosonic acid transferase
1473_slr2114-sacB ATGAAATTATCCGTTCTTACTGTGG… spore coat polysaccharide biosynthesis protein; SpsC spsC
1472_slr2113-sacB ATGTTAAGAGAACTAATTAAGCTCT… transposase
1471_slr2112-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
1470_slr2111-sacB ATGATAGTTAACCACGATAAACAAA… CBS domain-containing protein
1469_slr2110-sacB ATGACTGACTATCAAGGTTATTTAG… sugar phosphate isomerase/epimerase
1468_sll1997-sacB ATGATATCAAATTTTGGACATATTG… transposase
1467_sll1998-sacB ATGGCTTACAGTTTAGATTTGAGGC… transposase
1466_sll1999-sacB ATGGATAGAGGATTTTGTGACTTAC… transposase
1465_slr2108-sacB ATGGGAGTGGATGGGATGACCCAGG… polysialic acid transport ATP-binding protein; KpsT kpsT
1464_slr2107-sacB GTGAATGATAATCACTCAACACGTT… polysialic acid transport protein; KpsM kpsM
1463_ssr3571-sacB ATGGAAACCATTAATTATCAACAAT… type II toxin-antitoxin system Phd/YefM family antitoxin
1462_ssr3570-sacB ATGTCGGACGTGATGATCCGGGTAG… hypothetical protein
1461_sll2001-sacB GTGGCAAAATGGGGGACGGACAGTC… leucine aminopeptidase lap
1460_ssl2749-sacB ATGAAATGCCAATCAGTCCTGCAAT… DNA polymerase subunit beta
1459_sll1411-sacB ATGTCTAAATCTCCCAATCGGGAAT… DUF86 domain-containing protein
1458_slr1524-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
1457_slr1523-sacB ATGACAGCTTACTTGCGAGAGCAAG… transposase
1456_slr1522-sacB GTGAGAAGCTTTGAATACTTGCATC… transposase
1455_slr1521-sacB GTGGAATTAGCCCAGCGTTTGGGGG… GTP-binding protein; HflX hflX
1454_slr1520-sacB ATGCGGGGCTTAGGCAATCGCCAGC… aldo/keto reductase
1453_slr1519-sacB ATGGCTGGGCTGGCCTGGGCTAAGG… pentapeptide repeat-containing protein hglK
1452_slr1518-sacB ATGACCGAATCTTCGCCCCTAGCAC… 14-dihydroxy-2-naphtoic acid prenyltransferase menA
1451_ssr2554-sacB ATGGTTTTTATTCCTGATGAGAGCG… hypothetical protein
1450_slr1517-sacB ATGTCCCAGACCTATAACGTAACCC… 3-isopropylmalate dehydrogenase leuB
1449_slr1516-sacB ATGGCTTACGCACTACCTAACTTAC… superoxide dismutase sodB
1448_ssr2551-sacB ATGGCGATCGGAGAGCAAACCCATC… Cyanobacterial Signature Protein
1447_slr1515-sacB ATGGTGTCTCCCATCTCTATCTGGC… putative bicarbonate transporter%2C IctB family ictB
1446_ssr2549-sacB ATGCCAGACTTCCAGGCATTTATCG… hypothetical protein
1445_sll1414-sacB GTGACTAAAATTCGCACTGTTTCTG… photosystem II biogenesis protein Psp29 psp29
1444_sll1415-sacB GTGGAACTGAAACAGGTGATCATTG… NAD(+) kinase
1443_slr1513-sacB ATGGCTAAACCAGCGAACAAGCTCG… hypothetical protein
1442_slr1512-sacB ATGGATTTTTTGTCCAATTTCTTGA… sodium-dependent bicarbonate transport family permease
1441_sll1418-sacB ATGTTGAAAAAGTCCCTATCCACTG… photosystem II oxygen evolving complex protein PsbP plsX
1440_slr1511-sacB ATGCGCCAACGCTACATTTGTTCGG… beta-ketoacyl-acyl carrier protein synthase III fabH
1439_slr1510-sacB ATGGCTGTAACGCGGGCGAAAATTG… PlsX protein plsX
1438_slr1509-sacB ATGACTATTTCCCGTACCATTTGCC… Na+ -ATPase subunit J ntpJ/ktrB
1437_slr1508-sacB ATGCATATTGCTTGGTTAGGAAAAA… glycosyltransferase family 1 protein
1436_slr1507-sacB ATGGCAGGGTTTTCCCGTGTCATAC… adenosyl-hopene transferase HpnH hpnH
1435_slr1506-sacB ATGGAGAAAAAAATAACTTTACGTT… alpha/beta hydrolase
1434_ssl2781-sacB ATGCAAAAAGCCGACGAATTTGCCA… hypothetical protein
1433_sll1423-sacB ATGGATCAGTCCCTAACCCAAGATC… global nitrogen regulator ntcA
1432_sll1424-sacB ATGACCAGTGCCTATATTCTGGTTC… DUF3084 domain-containing protein
1431_slr1505-sacB ATGGATTTTCTCGCCTCCGAGTCCT… hypothetical protein
1430_sll1425-sacB GTGTGGGATAATGGGTCAGTGCGTC… proline-tRNA ligase proS
1429_sll1426-sacB GTGATGAAATCTTTACTGCGGGGAA… hypothetical protein
1428_sll1427-sacB ATGGCAATCCATCTGAAGGCATCAC… protease; HhoB hhoB
1427_slr1503-sacB ATGACAATTAGCACCACAGATACTT… aldo/keto reductase
1426_sll1428-sacB ATGGAGTCCAATTTTTTAACAACTA… bile acid:sodium symporter family protein
1425_ssl2789-sacB GTGGGGCAGTTTGAAAGAGAGATGA… resolvase; recombinase family protein
1424_sll1429-sacB ATGATATTAGTTCTTCCTTGGTTAA… restriction endonuclease
1423_sll1430-sacB ATGGATTTAAAAGCTTTAATTCGGG… adenine phosphoribosyltransferase apt
1422_slr2105-sacB ATGGCTCGGCTTACTGCTCTATTTC… hypothetical protein
1421_sll1973-sacB ATGACCACCGCTCTTTTACTCTGCC… glycerol-3-phosphate 1-O-acyltransferase plsY
1420_slr2104-sacB ATGAAGTCTTTTTTCCTCAACACAT… hybrid sensory kinase rre22
1419_slr2103-sacB GTGCTAAGAGCGACCAGTGATCGAT… acyltransferase family protein
1418_slr2102-sacB ATGTTTAATTGGTTCCGTCGTCAGT… cell division protein; FtsY ftsY
1417_slr2101-sacB ATGAAATTTATCTCCAGCTTCTTTG… cupin domain-containing protein
1416_slr2100-sacB ATGAACACTCCCCCCGATCCCAACT… regulatory components of sensory transduction system rre20
1415_slr2099-sacB ATGGATACAGCAACAACCAAGGGCA… hybrid sensory kinase
1414_slr2098-sacB ATGTTTTGGCAACCTGTTAGTCCCC… hybrid sensory kinase hik21
1413_slr2097-sacB ATGTCAACTTTGTATGAAAAATTAG… cyanoglobin glbN
1412_slr2096-sacB GTGGCATTTTCTTCAGGCAAAAAAA… transposase
1411_slr2095-sacB ATGTCTACACACTGTCACTGTCCTC… transposase
1410_slr2094-sacB GTGGACAGCACCCTCGGTTTAGAAA… GlpX protein glpX
1409_sll1979-sacB ATGACTGAGTCCGTAATCTCCCCAG… Cyanobacterial Signature Protein
1408_sll1980-sacB ATGACCCCGGCCAAAATTCGTAACG… thiol:disulfide interchange protein; TrxA trxA
1407_ssl3769-sacB ATGTTGGTACTTTCCGTCCTATCTT… hypothetical protein
1406_sll1981-sacB ATGGGGCAAATGAACACCGCAGACC… Glyoxylate carboligase; acetolactate synthase large subunit ilvB
1405_slr2092-sacB ATGGCTAGGTCTTTGGGCAGAACGC… Uma2 family endonuclease
1404_sll1982-sacB GTGGGTAGGATAGAATGGAGGAAAA… transposase
1403_sll1983-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
1402_sll1984-sacB ATGTTAAGAGAACTAATTAAGCTCT… transposase
1401_sll1985-sacB ATGAAATTATCCGTTCTTACTGTGG… transposase
1400_slr2089-sacB ATGGTTATTGCCGCCTCTCCCTCCG… squalene-hopene-cyclase shc
1399_slr2088-sacB GTGGTTGCATCAATTCCTAATCCCA… acetohydroxy acid synthase ilvG
1398_slr2087-sacB ATGACCATTGCCAATCCTTCCCCTA… cytochrome c biogenesis protein ycf44
1397_sll1987-sacB ATGGGCACCCAACCCGCCAGGAAAT… catalase hpi katG
1396_sll1988-sacB ATGGCAGACCAATTGATCCGCGCCA… Hsp33 family molecular chaperone HslO hslO
1395_slr2084-sacB ATGGCCGTTAATCTAGAAACTCGCA… Uma2 family endonuclease
1394_slr2083-sacB ATGGAATCAGGTAATCATCTCCCCC… cytochrome c oxidase subunit III ctaE
1393_slr2082-sacB ATGACTAACCAGCCCACCGCATCGG… cytochrome c oxidase subunit I ctaD
1392_slr2081-sacB ATGAAAATTGGTGTTGTTGGTTTGG… prephenate dehydrogenase tyrA
1391_slr2080-sacB ATGCCAATCAGTGAAGATCTCAAAC… HNH endonuclease
1390_ssr3532-sacB ATGGTTACAACTTTTAGCAAACCAT… hypothetical protein
1389_slr2079-sacB ATGGGGATTGGCGTAAACTCAGATC… glutaminase
1388_sll0236-sacB ATGACCGTTTCTCCCTTTGATTTCA… hypothetical protein
1387_ssl0438-sacB ATGGGCATGACTATAATTTTGATAT… 50S ribosomal protein L12 honologue
1386_sll0237-sacB ATGCTTTTATCAACGAGGAAACAAT… extracellular solute-binding protein
1385_sll0238-sacB ATGCGATCGCCAACTAGCTTTGGGG… iron ABC transporter permease
1384_sll0240-sacB ATGATCAGAGTTGAACAGGTGAGCA… ABC transporter ATP-binding protein
1383_sll0241-sacB GTGAAAATGAAACCATGGCGTTTTC… transcriptional regulator
1382_sll0242-sacB ATGGACTTTGTCGAAGCCGAGCAAA… hypothetical protein
1381_sll0243-sacB ATGATTGATTTTATTAAAAAAAAAG… zinc ribbon domain-containing protein
1380_slr0273-sacB ATGCCCAAAAATATGTCACCAATCT… hypothetical protein
1379_slr0272-sacB ATGACTACTCCCGTTTTTTGTACTA… zinc ribbon domain-containing protein
1378_slr0271-codA ATGCGAATCAACCATAAGCCTCTAT… hypothetical protein
1377_ssl0452-codA ATGAAACCTGAATCCTTCGATCTCA… phycobilisome degradation protein; NblA nblA
1376_ssl0453-sacB ATGATCAACAACGAAGCCTTTAACC… phycobilisome degradation protein; NblA nblA
1375_slr0270-sacB ATGATCAATCCCCAACCAGACGAAA… DUF2605 domain-containing protein
1374_slr0269-sacB ATGCCATCTACTTTTTCCCAACCAT… hypothetical protein
1373_sll0244-sacB ATGGCCACGCAACAAACAATTTTGG… UDP-glucose 4-epimerase galE