Plasmids and Cultures

This database contains entries for 3,572 known and predicted gene coding sequences in Synechocystis sp PCC 6803 based on the Kazusa genome sequence and nomenclature (http://genome.microbedb.jp/cyanobase/GCA_000009725.1). Plasmids for generating marked mutants and mutant strains can be searched for by gene Name/Accession (e.g. 'sll1226' or '1513_sll1226-sacB'),  gene homology (e.g. 'hydrogenase large subunit'), Gene ID (e.g. hoxH), or by a portion of the gene coding sequence Sequence (CDS).

Please note, the library is still being completed. Plasmids and/or marked mutants may not be available. Users can also search for available materials by Plasmids made or Mutant made.

Plasmids, mutants and the unmarking spacer plasmid pUC19K-UL are currently available on request. Regardless of the segregation status of the mutant, open reception of a cyanobacterial mutant strain we recommend 1-2 cycles of restreaking on a selection plate containing kanamycin (100 μg/ml).

Name CDS Gene Homology Gene ID Sort ascending
1288_slr2060-sacB ATGGAATCCCCCATCCAAGCCCAAC… 1-acyl-sn-glycerol-3-phosphate acyltransferase
1162_sll1699-sacB ATGCGTTGGGGAAACAAAGTAGCAA… ABC transporter substrate-binding protein
1226_sll0846-sacB ATGAAATTTTCCCTCGAGTCTCTCT… DUF1232 domain-containing protein
3524_sll6069-sacB ATGACACTCATTGCAATTATGAAAT… hypothetical protein
3398_sll5075-sacB ATGAAAGAAGACTTTGGTTTTACAC… VOC family protein
3462_slr6007-sacB ATGTTTGCCTCCAATCCAAAACCTA… DUF853 family protein
3272_slr7104-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
3336_slr5013-sacB GTGACTACACTCAGCCAATATTTTC… hypothetical protein
1116_ssr3184-sacB ATGCCCCATACCATTGTTACGGAAA… ferredoxin
3146_slr0593-sacB ATGGAACTGGGAAAGATTAGTCCAA… cAMP protein kinase regulatory chain
0926_slr1222-sacB ATGATTGGACAGGTAGTTAGGCTTG… hypothetical protein
3210_ssl7042-sacB ATGGGCACTGCCACTAGATATACGG… DUF1819 family protein
3211_sll7043-sacB ATGCCTAAAAAACTATCAGTTCCTG… hypothetical protein
0991_sll1280-sacB GTGAAGTTAGGCCGAATTTTAAAAA… M48 Ste24 endopeptidase-like, integral membrane metallopeptidase
3021_sll1474-sacB ATGATATCAAATTTTGGACATATTG… transposase
0801_slr1198-sacB ATGGCCTTACAACTCGGTGATGTTG… rehydrin or peroxiredoxin
0865_sll1722-sacB ATGCACTCCATTCAATCACCCCGAC… glycosyl transferase
0675_slr2008-sacB ATGTTAGGGCCAGAAGCCTGTATTT… cation:proton antiporter
0739_sll1824-sacB ATGTTCCACGGAAGAATGCCGCACC… Ribosomal protein L25 (general stress protein Ctc)
2769_sll0676-sacB ATGGCTAAAAATGATTTGCAATCTC… DUF4334 domain-containing protein
0549_slr1906-sacB ATGGTCAAGTCCACCCCTTCTCCTC… GNAT family N-acetyltransferase
0613_slr1383-sacB ATGAAAAGTACGGTTTACATTGAAA… PIN domain-containing protein
0423_sll1510-sacB ATGGCATCATTAATCAGCTTTTGGT… sterol desaturase family protein
2707_sll0283-sacB ATGTTTAATTCCATTCGTCGGCTAT… hypothetical protein
0487_ssr2962-sacB ATGAATAGCTTACTGTCTCGCATTA… DUF433 domain-containing protein
2517_slr0569-sacB ATGGAGTCGGCCACCATGTCTTTTC… DUF2779 domain-containing protein
0297_sll0938-sacB ATGCAATTTGCTGATCGTCTCAACG… aspartate transaminase
2391_slr0640-sacB ATGTTTCAGGCCACCCGTCGACGTT… sensory transduction histidine kinase
0171_sll1041-sacB ATGAGTGAACCAGTCCAGCCCATTA… ABC transporter
0235_ssr2998-sacB ATGACGATTGAAATAGGTCAAAAAG… DUF2862 domain-containing protein
2329_slr0067-sacB ATGCTAACCACCGATGCCGTTTTAA… put. ATPase
2139_sll0327-sacB ATGGATAACAAAAACGAGAATCAAG… hypothetical protein
2203_slr0356-sacB ATGACTAGACCAATTTCCCTGGGCT… DUF2808 domain-containing protein
2013_sll1860-sacB ATGATAATTCGAGAATTTTACAGCA… transposase
2077_sll0293-sacB ATGCCGAATATTCGTCCTCTGACCG… hypothetical protein
1887_slr1648-sacB ATGACCGCTACCCTCTCCCGGGCCG… carotenoid oxygenase family protein
1951_slr0397-sacB ATGGTTCTCACCCAGTTCGCCTCCA… DUF3038 domain-containing protein
1573_sll1256-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
1383_sll0241-sacB GTGAAAATGAAACCATGGCGTTTTC… transcriptional regulator
1257_sll1155-sacB ATGGCGCTCAGCGGGGTCGCCATTG… Cyanobacterial Signature Protein
1195_sll1623-sacB ATGTCCACCCCCGCCATCATTGCCC… energy-coupling factor ABC transporter ATP-binding protein
3493_slr6038-sacB GTGGAGTTGATGAAGGATGACCGTT… Predicted restriction endonuclease, HNH family
3557_slr6102-sacB GTGTCTAGGATTATGAAATCAAGCC… type I restriction-modification system R subunit
3367_sll5044-sacB ATGATCCAAGAGTTTCAGCGGTTTA… hypothetical protein
3431_ssl5108-sacB GTGAGGAGTTCTAGCCATGGAAAGC… DNA cytosine methyltransferase
3241_slr7073-sacB ATGCCTAACCCCACCGTTGAAATTA… hypothetical protein
1021_slr0878-sacB ATGACTCCCCATGTGGTGAAAGCTG… M23 family metallopeptidase
3115_slr1179-sacB GTGGATGGCATTGATGCCTGTTTAG… anhydro-N-acetylmuramic acid kinase
0895_slr1547-sacB ATGATTAATTTGGTTGAATTTAATC… permease
0959_slr1240-sacB ATGGCCAGAAAATCAAAAGAATTTC… hypothetical protein
3053_sll0723-sacB ATGGCTAACAAATTCAAATTTACTG… DUF4114 domain-containing protein
2863_sll0503-sacB ATGAATAATAATTCCTTGACTGATT… DUF697 domain-containing protein
0643_sll1584-codA ATGGAAAACCCTGTCCCCATAACTC… ferredoxin
0707_slr1134-sacB GTGTGGAGATATGCCCAGGTTTTCA… NUDIX hydrolase
2611_slr0505-sacB GTGAACAGGGTGAGAATTTGGAGTA… biopolymer transporter Tol
2675_slr0108-sacB ATGGCAATGGTTAGTTTTGCCTGGC… AsnC family protein
0455_sll1011-sacB GTGGGCCATTGCACAGCGGTGATTA… hypothetical protein
0329_slr1613-sacB ATGGTTTTTACATTAGAAAAGTCTC… Uma2 family endonuclease
2359_slr0496-sacB ATGGAAAATCCCCTGCAAAAAGTGG… hypothetical protein
0077_sll1049-sacB GTGTCTATGGTTGTCGATTCTGTGC… transglutaminase family protein
0203_sll1686-sacB ATGTTAGTCACCGACTCTCTTTTGC… TM0106 family RecB-like putative nuclease
2233_sll0010-codA GTGATTAAAATTCGAGGCTTTCCGG… hypothetical proteins
2297_slr0049-sacB ATGGCTAAAGTAATGATTGTGGGAG… saccharopine dehydrogenase family protein
1919_sll0269-sacB ATGACCGAACCCCTTTTCTGGCTGG… hypothetical protein
1983_ssl0259-sacB ATGAATTATCCAATTGTTATTTATC… type II toxin-antitoxin system HicB family antitoxin, type II toxin-antitoxin system HicA family toxin
1793_slr1682-sacB ATGACAAAGACAAGAGAGGCGAAAA… transposase
1857_sll1537-sacB ATGCCTCCCCAATTTCCCTTAGCTA… NUDIX domain-containing protein
1667_slr1472-sacB ATGGAAAAAATAGTTACCCAAGCCC… protein jag
1605_slr1959-sacB ATGGATAAACCCAGTTCCTTTTTCG… hypothetical protein
1415_slr2099-sacB ATGGATACAGCAACAACCAAGGGCA… hybrid sensory kinase
1479_slr2120-sacB ATGCCCCTTGTCTCCCTAATTATTC… glycosyltransferase
1289_sll1956-sacB ATGATTCATGCTATTGAGACAACGT… Uma2 family endonuclease
1163_sll1698-sacB ATGCTCATGGACTGGATTCCTTTCG… hypothetical protein
3525_slr6070-sacB ATGATTACTGCTTGCAGTCAGGAGC… thermonuclease family protein
3399_sll5076-sacB ATGAAAGCTACTGTATATATTGCAA… dihydrofolate reductase
3463_slr6008-sacB ATGAATTGGCGGGCTTTACTGTTGG… hypothetical protein
3273_slr7105-sacB ATGTTAAGAGAACTAATTAAGCTCT… transposase
1053_ssl2595-sacB GTGGCTAAGTATGTGCTTTGGGGAA… hypothetical protein
3337_sll5014-sacB ATGAGTCAAATATTTCAATGTCCTT… hypothetical protein
1054_sll1315-sacB ATGAAGCATATATTTAGGTTTAAAA… hypothetical protein
3338_ssl5015-sacB ATGAGTGATTTCCCAAAAGACTGGG… hypothetical protein
3148_slr0594-sacB GTGATTGAATTTCGGGAAAGTCTCA… FtsX-like permease family protein
0928_sll1142-sacB ATGATTGAGATGAGAGTAGCTGGCA… bifunctional nuclease family protein
3212_sll7044-sacB GTGAAGATAGTCGTATTTAACGGCA… hypothetical protein
3022_sll1473-sacB ATGGGCAAATTTCTAATTCCAATCG… PAS domain S-box protein
3086_slr0449-sacB ATGACTGTTGCTCCGGATCTGGCCC… DNR protein
0866_slr1837-sacB ATGGCCAATATCCTCTTAGTGGACG… response regulator transcription factor
2896_sll0536-sacB ATGCAGGATTCCAATCAACGGCTCA… potassium channel protein
2960_sll0630-sacB ATGGGTTACTGCCGTTTTTTACCAA… hypothetical protein
2770_ssr1175-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
0550_slr1907-sacB ATGGAGTTGGCGGGCTTGGCTATGG… hypothetical protein
0614_ssr2317-sacB GTGCCTGCCGAGAATTTGGCTTTGA… hypothetical protein
2644_slr0615-sacB ATGGCCGCCCCCAGCGTCAAGCAGT… ABC transporter ATP-binding protein
2708_slr0309-sacB ATGGAGCACAAGCCAAACGAGTTTG… P-methylase, B12-binding domain-containing radical SAM protein
0488_slr1767-sacB ATGAATATTTGGGTTGATGCTCAAC… hypothetical protein
2518_sll0547-sacB ATGGTCAGCAGCCAAAAGCCCATCG… hypothetical protein
0298_ssl1792-sacB ATGGCTTTCTTTAAAAGTTTATTTT… SH3 domain-containing protein
0362_slr1087-sacB GTGGCCTGTGGGGTTTCCCCCGATG… hypothetical protein
2392_sll0609-sacB GTGGATTTATCGTCAATCAGCCCAG… DUF3593 domain-containing protein
0172_sll1040-sacB ATGCCTATGGGTTGCCGATTTGCCA… mechanosensitive ion channel family protein
2456_sll0182-sacB ATGACCCAAGCCCAAGCCAAGCGTT… ABC transporter
0236_slr1794-sacB GTGGCGTTAGTTCTGACTTTTTTAG… arsenic-transporting ATPase
2266_slr0230-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
2140_slr0386-sacB ATGCCACCTTTCTCCGCAATCGTTT… SGNH/GDSL hydrolase family protein
2204_sll0312-codA ATGCGCAATCCCCTCCGTTGGCTCC… OppB in a binding protein-dependent transport system
2078_slr0338-sacB GTGTTTAGGAGTGGCAACAGCATCA… Gfo/Idh/MocA family oxidoreductase
1888_ssr2754-sacB ATGAAAGCAATTACAACCACCCAAG… type II toxin-antitoxin system Phd/YefM family antitoxin, Txe/YoeB family addiction module toxin
1952_slr0398-sacB ATGACTACAATAATGGTCAACCTGG… hypothetical protein
1826_sll0914-sacB ATGCCCGCCCCCAAAATTATTAAAA… hypothetical protein
1636_slr1977-sacB ATGATTTCAGCCGACCTCAATCCCC… hypothetical protein
1574_slr1338-sacB ATGTCAAACCAACGGGATTACACGC… VWA domain-containing protein
1384_sll0240-sacB ATGATCAGAGTTGAACAGGTGAGCA… ABC transporter ATP-binding protein
1448_ssr2551-sacB ATGGCGATCGGAGAGCAAACCCATC… Cyanobacterial Signature Protein
1322_sll1611-sacB GTGCTCACTGCTCAATCTGAATACG… fatty acid desaturase
1132_sll2013-sacB ATGCGAGTTACCTTTTCCGCCACCG… DUF1997 domain-containing protein
1196_slr1736-sacB ATGGCAACTATCCAAGCTTTTTGGC… homogentisate phytyltransferase
3494_slr6039-sacB GTGGGTAATCAATTCTGGATATATG… DUF305 domain-containing protein
3558_slr6103-sacB ATGGTTAGTACGATGAACATCATTG… M48 family peptidase
3368_ssl5045-sacB GTGTTTGAAAAGCCCCCCTGGTCCC… no conserved domains
3432_sll5109-sacB ATGACTCAATTCTACAAGCTAACCA… hypothetical protein
3242_ssl7074-sacB GTGTGCCAGGAAAACCCAGGTCATT… hypothetical protein
3306_sll8032-sacB ATGAGTAACCTTATTCTGCAAATCA… hypothetical protein
1086_sll1775-sacB ATGTCCCTGTTAGTCCAGAAACCTG… hypothetical protein
0896_sll1466-sacB ATGAACGTTCTCTTTCTTCACCAAA… glycosyltransferase
0960_slr1241-sacB ATGCAAATTTCCCCAGCATTTAAAT… hypothetical protein
3054_sll0722-sacB ATGATCAGAACTAAATTGGTTGAGT… hypothetical protein
0834_slr2077-sacB ATGAATGGTATTCACCGTTGGCTTT… EAL domain-containing protein
2928_sll1340-sacB GTGGATAGACCACCAGTTTTAACTA… Cyanobacterial Signature Protein
0708_slr1135-sacB ATGATTGAAGATAATCAGTCCCACA… hypothetical protein
2802_sll0744-sacB ATGGATCTCACTACCCAATACCTCG… dihydroorotate dehydrogenase-like protein
0582_slr1023-sacB ATGAAAAACCTTTGGCAATTGCCCG… cupin domain-containing protein
0392_sll0645-sacB ATGTCTAACCGCCCAGGAAAGTTAC… DUF928 domain-containing protein
2676_slr0109-sacB ATGATGTTAGATACCACATTTTTGT… mechanosensitive ion channel family protein
0266_ssl2384-sacB ATGTTTGATCGTTCCAACAAAGATT… hypothetical protein
0330_slr1614-sacB ATGTTTTTACATGTTGTTTCTGCTT… DUF2442 domain-containing protein
0140_slr0252-sacB ATGGTGGATAGCCTGGCAACCGTTT… precorrin-6A reductase
2424_slr0420-sacB GTGACCCCCGGTGGCTTGATCTTCT… hypothetical protein
0078_slr1127-sacB ATGCCGTTAGAATGGAAAGGAGGGC… hypothetical protein
0204_ssr2972-sacB GTGTCAGGATTCAATCAACAGTTAA… hypothetical protein
2234_slr0019-sacB ATGGTGTTTCGATTCCCCTCGCCAG… fimbrial biogenesis outer membrane usher protein
2172_sll0752-sacB ATGCGTATTTCTGACTTTTTCAGTG… periplasmic component MlaD domain
1920_sll0268-sacB ATGAGGCCAGCATTTTCTCCCCTTC… YtxH domain-containing protein
1794_sll1560-sacB ATGATATCAAATTTTGGACATATTG… transposase
1668_sll1384-sacB ATGAGCTCGTTTCCCATCAAGCAAG… J domain-containing protein
1542_slr0812-sacB GTGGAAACATCAAAGCCGGGTTGTG… type III pantothenate kinase
1606_sll1897-sacB ATGGCCTACTGGTTATTTCAAGGCA… EVE domain-containing protein
1480_slr2121-sacB ATGACTGCTTACCACCTAATTGATA… cyclase family protein
1290_sll1954-sacB ATGACCAATTTCCCCCCTTTACTAA… hypothetical protein
1164_sll1697-sacB ATGGTCAAATCCGTTAGCTTGCTCC… thylakoid-associated protein
1228_slr0863-sacB ATGAACTTAGCCACCATTAAAGTCA… metalloprotease
3526_slr6071-sacB ATGGACAGCCCCCGGCAATTGTCAT… hypothetical protein
3400_slr5077-sacB ATGTTTGATAATCTGTGCAAATTTC… Rpn family recombination-promoting nuclease/putative transposase
3464_slr6009-sacB ATGGAAGACCCCCAGGGACAATCTA… hypothetical protein
3274_sll8049-sacB type I site-specific deoxyribonuclease chain R
3465_sll6010-sacB ATGACACTCATTGCAATTATGAAAT… hypothetical protein
3275_sll8001-sacB ATGTTTGAATGTAAAAGTGGCAACA… Appr-1-p processing protein
3339_slr5016-sacB ATGGGAAAAGCAGGACAAGCATTAA… hypothetical protein
3213_ssl7045-sacB GTGGCTGCTAAACTCTCTTGCGCTG… hypothetical protein
3023_sll1472-sacB ATGTTGAAACTAGCCGGTAAAAAAG… hypothetical protein
3087_sll0449-sacB ATGGCTGGCAATCAACCGGATAAAT… hypothetical protein
0677_slr2010-sacB ATGACTGGACTCCTTGATATTGGTT… cation:proton antiporter
0741_ssl3446-sacB ATGGTAGTGTCCCAAAATTTTATTC… DUF2949 domain-containing protein
2771_slr0703-sacB ATGATAATTCGAGAATTTTACAGCA… transposase
0551_slr1908-sacB ATGAATAAGTTGACCAGTCATTTAC… hypothetical protein
0615_slr1384-sacB GTGAAGATTCTTTTCATTAGCAACG… Cyanobacterial Signature Protein
2645_slr0616-sacB ATGTCTGAACCGAAACCAAGCCAGC… MFS transporter
0425_slr1599-sacB GTGAGTATTCCCCTGGCTACGGGAT… hypothetical protein
2709_sll0282-sacB GTGCAAAAAAATCTGATGGCAATGC… hypothetical protein
0489_sll1640-sacB ATGATTTATCTAACCCGTCTTCAGC… carbon-nitrogen hydrolase family protein
2519_sll0546-sacB ATGGCCAGTTCCAAACCTCCAGCTC… translation initiation factor
0299_sll0936-sacB ATGGCCAGAGATTTACGGGGATTCA… UbiD family decarboxylase
0363_sll1025-sacB ATGGAAAATTTCGATGCCATTGTGG… FAD-binding oxidoreductase
2393_sll0608-sacB GTGAATGCTCTCTCAATTCCCACTT… Ycf49-like protein
2457_sll0181-sacB ATGAATATAAATAAAGGCAAAGTAA… hypothetical protein
2267_slr0231-codA ATGTTATTCCAAAGATTTTTGGACT… DNA-3-methyladenine glycosylase 2 family protein
2331_slr0069-sacB ATGACTTCCCCACCAACTCCAGACC… hypothetical protein
2015_sll1858-sacB ATGTCTAGTTCCCGTGGCCCCTATA… hypothetical protein
2079_slr0168-sacB ATGACTATTCAATACACCCCCCTAG… hypothetical protein
1889_slr1649-sacB ATGTCCCATTCCACTGATCTTTCCG… chromophore lyase CpcT/CpeT
1763_slr1168-sacB ATGTTAACCGTTACTAATTATCCCC… DUF433 domain-containing protein
1827_slr0944-sacB ATGGTCAATCGCATTAACCCCAAAG… transporter
1637_slr1978-sacB ATGGACTTGATGCGGTCTTTACCCA… hypothetical protein
1701_sll1174-sacB ATGCGCGTTGAACCCTGTTGCCAAG… FkbM family methyltransferase
1575_slr1339-sacB ATGCTATTGAGGATTGAAACCAGAT… hypothetical protein
1385_sll0238-sacB ATGCGATCGCCAACTAGCTTTGGGG… iron ABC transporter permease
1323_slr1715-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
1197_slr1737-sacB ATGAAATTTCCGCCCCACAGTGGTT… hypothetical protein
3495_slr6040-sacB ATGAGATTGTTGCTGGTGGAGGATG… two-component response regulator
3559_slr6104-sacB ATGAAAAATATTATTATCTCAAATT… hypothetical protein
3369_sll5046-sacB ATGAACACTTCTTTCCTCGAATCCC… sulfotransferase
3433_slr5110-sacB ATGCTCTTGAGGGAGCAACCTTTTA… XRE family transcriptional regulator
3243_sll7075-sacB ATGAGCATTTTACGATACGAAGAAA… hypothetical protein
1023_slr0880-sacB ATGCAAGCTGTTGATTACACTACCC… secreted protein MPB70 precursor
3307_sll8033-sacB ATGCGAGCCTTACCTTCTTTCCCCA… hypothetical protein
1087_sll1774-sacB ATGTTTGACAATCTGTGCAAATTTC… Rpn family recombination-promoting nuclease/putative transposase
3117_sll1109-sacB ATGTCTGCTTATCTGTTTAATCAAG… Cyanobacterial Signature Protein
0961_ssr2067-sacB GTGATTATGACTGTTAGTAATATTT… type II toxin-antitoxin system HicB family antitoxin
3055_sll0721-sacB GTGGAGGGTTTCAAAATGGGGAAAA… leukotoxin; LtA
0835_slr2078-sacB ATGTGGCATCTTCCTCCCAGTAATT… NUDIX hydrolase
2865_sll0501-sacB ATGACCATTGAACTGTCTATTGTGA… glycosyltransferase