Plasmids and Cultures

This database contains entries for 3,572 known and predicted gene coding sequences in Synechocystis sp PCC 6803 based on the Kazusa genome sequence and nomenclature (http://genome.microbedb.jp/cyanobase/GCA_000009725.1). Plasmids for generating marked mutants and mutant strains can be searched for by gene Name/Accession (e.g. 'sll1226' or '1513_sll1226-sacB'),  gene homology (e.g. 'hydrogenase large subunit'), Gene ID (e.g. hoxH), or by a portion of the gene coding sequence Sequence (CDS).

Please note, the library is still being completed. Plasmids and/or marked mutants may not be available. Users can also search for available materials by Plasmids made or Mutant made.

Plasmids, mutants and the unmarking spacer plasmid pUC19K-UL are currently available on request. Regardless of the segregation status of the mutant, open reception of a cyanobacterial mutant strain we recommend 1-2 cycles of restreaking on a selection plate containing kanamycin (100 μg/ml).

Name CDS Gene Homology Gene ID Sort descending
0726_slr1147-sacB ATGGCCGGTTCCATCTCATCAATGT… sensory transduction histidine kinase
0536_slr2046-sacB ATGAGCGTCTACAATCTTGATTTGT… cadherin
0600_sll0982-sacB ATGACTACCAACAACAGCACTTTGT… hypothetical protein
0410_slr1592-sacB GTGCTGGACTTCTACTCCCAACGCT… RluA family pseudouridine synthase
0474_slr1753-sacB GTGGTGGAAATATTGTTAATTTCAC… CHAT domain-containing protein
0284_sll1186-sacB ATGTTGCTAGCCCTAGACCGCATCA… Uma2 family endonuclease
0348_slr1074-sacB ATGCCCACCATAAGAATTAATAAAT… hypothetical protein
0096_slr0728-sacB GTGTGGGCCGCCCTGACCCTATGGT… O-antigen ligase family protein
3528_slr6073-sacB ATGAGTTTACCAACTGAATTGATTG… hypothetical protein
3402_sll5079-sacB ATGATTCTCGTCAGTTTGTATCCGT… glucose 1-dehydrogenase
3466_slr6011-sacB ATGATTACTGCTTGCAGTCAGGAGC… thermonuclease family protein
3276_sll8002-sacB ATGACCGTTCCCGCTCAGCCTAAGA… DUF4433 domain-containing protein
3340_slr5017-sacB ATGCTCTCAGTAACTCACCTCAAAA… DNA polymerase subunit beta
3277_ssl8003-sacB ATGACCAATCAACAGGGTAATGTTA… hypothetical protein
3341_slr5018-sacB ATGAATCGTGACAACGCTTATCTGC… DUF86 domain-containing protein
3215_sll7047-sacB ATGACAAACCGAATGATAGAGACTT… DUF4386 domain-containing protein
3089_sll0447-sacB ATGGAATTTTTTAAACTTATATCAG… hypothetical protein
2963_slr0654-sacB GTGGTAATTCCAACCCTTAAGGCAC… hypothetical protein
2773_slr0704-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
2647_slr0617-sacB ATGATTAACGGAAAGCCCCAACCTC… hypothetical protein
2711_sll0280-sacB ATGGAAAAAGATCATTGTTCCCTCG… hypothetical protein
2395_slr0643-sacB ATGTGGCTTCTTTTGCTCATCCTTG… fbt
2459_sll0180-sacB ATGGTTAGAAAACGCTCCCAATTCC… efflux RND transporter periplasmic adaptor subunit
2269_slr0232-codA ATGGGTTGGGAATTTTTTTCGCTAG… DedA family protein
2143_slr0769-codA ATGCAGAAACAAGTCTCTCCCCTAG… L-2CD-transpeptidase
2207_sll0310-codA ATGAGTTTGAGTTACCGTATTCGTC… N-acetyltransferase
2017_slr1935-codA ATGGAATCTAAGTTGCTGAGTGCAA… MFS transporter
1955_slr0401-sacB ATGAATTTACCCTGCTATTCCCGCC… spermidine/putrescine-binding periplasmic protein
1765_slr1170-sacB GTGTCCCCACCATTGCCGCTGTTAC… TMEM165/GDT1 family protein
1639_slr1980-sacB ATGGTTAGAATCATTGCAAAAAGCC… hypothetical protein
1577_sll1255-sacB ATGATATCAAATTTTGGACATATTG… transposase
1387_ssl0438-sacB ATGGGCATGACTATAATTTTGATAT… 50S ribosomal protein L12 honologue
1451_ssr2554-sacB ATGGTTTTTATTCCTGATGAGAGCG… hypothetical protein
1325_sll1609-sacB ATGATGGTCGTTGCTACAACTAAAA… Uma2 family endonuclease
1073_slr1856-sacB ATGGATATTCAAATTAATCAACAGG… anti-sigma B factor antagonist
0947_sll1132-sacB ATGATGGGTAAATTTTTTCACTTCA… hypothetical protein
0695_sll1916-sacB GTGAAAATAGCCCTTTTTGGCACCA… nicotinate-nucleotide adenylyltransferase
0569_slr1919-sacB GTGCCTAACCCCAAACCCCTGCCAC… AarF/ABC1/UbiB kinase family protein
0317_slr0976-sacB ATGTCAGCAATAACGGCCCAGGAAC… Uma2 family endonuclease
0127_slr0243-sacB ATGCGAAAATCACTTTCGGGCAAGC… hypothetical protein
3497_slr6042-sacB ATGCAAAACCGGATCATTGTTCAGG… efflux RND transporter periplasmic adaptor subunit
3561_slr6106-sacB GTGCGATTCAACGATTCTGGGTCAG… hypothetical protein
3371_sll5048-sacB ATGAAAATCACCTTTGTTTTACCCT… glycosyltransferase
3435_slr5112-sacB TTGATTGTACAGGTTACTTCTGGTT… hypothetical protein
3245_sll7077-sacB ATGAATTTATCCCATCCTACTCCCC… bifunctional (p)ppGpp synthetase/guanosine-3'%2C5'-bis(diphosphate) 3'-pyrophosphohydrolase
3309_sll8035-sacB ATGTTTGCCAACGTGATCGCCACCC… hypothetical protein
3057_sll1552-sacB ATGTATGAACCAATTCAATTGGACA… N-acetyltransferase
2931_sll1336-sacB ATGGCTGACGATATTCGCATTTTGA… TIGR00300 family protein
2741_sll0788-sacB GTGGGTAATCAATTCTGGATATATG… DUF305 domain-containing protein
2615_sll0480-sacB ATGGCCAGTATCAACGACAACTATC… LL-diaminopimelate aminotransferase
2679_sll0094-sacB ATGGCAATCCACTATGCGTCCCTTG… sensory transduction histidine kinase
2363_ssl1300-sacB ATGAAAAGATCTGTAACTATGTCTT… antitoxin
2301_sll0071-sacB ATGCGTAAACTTTACTTTTTATTAC… glycosyltransferase
1985_slr0157-sacB ATGGCTATCTCTCTAGATGAAGATA… hypothetical protein
1923_sll0265-sacB ATGGCACAAACTGTTAGTGGCTTTA… ferritin-like domain-containing protein
1797_sll1559-sacB ATGGATAATAAGCAAATGTTGATGA… Serine/glyoxylate aminotransferase, soluble hydrogenase 42 kD subunit
1671_slr1474-sacB ATGGCGAGTGGAAATAAGTTTCAGT… NlpC/P60 family protein
1735_slr1533-sacB ATGACAGCTCCCCTAACCCTCAACT… hypothetical protein
1609_sll1895-sacB ATGCTTTATCAATTGGTCGTTGATT… EAL domain-containing protein
1419_slr2103-sacB GTGCTAAGAGCGACCAGTGATCGAT… acyltransferase family protein
1483_slr2124-sacB ATGAAACCAGTTGTTCTTATCACCG… short-chain alcohol dehydrogenase family
1293_sll1951-sacB ATGGCACTAAGTCCTAACGTAATTG… hemolysin
1357_sll0253-sacB GTGAAAACTGCGATGATCCCCATTT… hypothetical protein
1167_slr1813-sacB ATGGTTGCCGAACTCCGCAAAACTA… DUF29 domain-containing protein
1041_slr0890-sacB ATGGGTTTAGTTTATGCCAATATTG… clan AA aspartic protease
0915_sll1634-sacB ATGAGCAAGGAATTTCGAGAGCTAT… hypothetical protein
0979_ssr2422-sacB ATGACTAACAATGACAATATTCGCT… thylakoid membrane protein
0853_sll1736-sacB GTGAACAACTTTTCCCCCAAATTTG… hypothetical protein
0663_slr1708-sacB ATGCAGTCCCAATCGAGGATAAAAG… lysostaphin
0727_slr1148-sacB ATGCGAATCCCTTACGAAAAAGCAA… DUF4269 domain-containing protein
0601_sll0981-sacB ATGAGCCTGAAAAAATTTAAGGAAG… hypothetical protein
0411_slr1593-sacB ATGTTTATATTTCCACGCTTTCCCC… EAL domain-containing protein
0349_slr1075-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
0097_slr0729-sacB ATGACCTCAACTACCCCAGAGATTG… Cyanobacterial Signature Protein
0223_sll1675-sacB ATGACCCTTTCTTCTGGTTTACCTA… VOC family protein
3529_slr6074-sacB ATGAAAATTATTGTTAAATTACAAG… hypothetical protein
3403_sll5080-sacB ATGAGCACCATCACTACCAAAGACG… non-heme chloroperoxidase
3467_slr6012-sacB ATGGACAGCCCCCGGCAATTGTCAT… hypothetical protein
3404_sll5081-sacB ATGAATGAGAAATTTTTCAAATTAG… DUF1963 domain-containing protein
3468_slr6013-sacB ATGGAAGGGGATGTTGTACAGCTAA… DUF2357 domain-containing protein
3278_sll8004-sacB ATGTGGAACGGGAGAGAATATATGT… hypothetical protein
3342_ssr5019-sacB ATGCAAAGCAATAAGCAGATCCACC… aminotransferase class V-fold PLP-dependent enzyme
3152_sll0565-sacB ATGGAAGAAACTTTTGTCGCACCGA… hypothetical protein
3216_ssl7048-sacB ATGCTTGCTAAGTTGACATCTAAGA… AbrB/MazE/SpoVT family DNA-binding domain-containing protein
3026_slr1585-sacB ATGGCTTACGATCTTGATTTACGCA… transposase
3090_sll0446-sacB ATGACTAACCAACCCCTACTTCCCA… hypothetical protein
2964_slr0655-sacB ATGCCCCAACCCATTACCCCCCAAC… DUF427 domain-containing protein
2774_ssr1176-sacB ATGGTTTTTACCGGGAGTTTGAATG… transposase
2648_sll0590-sacB ATGAAAAGAATTGGTCACATGTTGG… mechanosensitive ion channel family protein
2522_slr0572-sacB GTGGATATTTTGGCACAACTTTTGT… hypothetical protein
2396_sll0606-sacB GTGTTTGGTCGGTTGCCCTTAAGTG… hypothetical protein
2460_slr0204-sacB ATGGGGACATTTACCTATGAAAGGC… 1%2C4-dihydroxy-2-naphthoyl-CoA hydrolase
2144_slr0770-codA ATGGCGACAACCCTAATCAATCATA… DUF433 domain-containing protein
2208_sll0309-sacB ATGGTCAATCTTCTCGTAATTAGTT… hypothetical protein
1766_slr1171-sacB ATGACTGCCCAAGCCAACAACACAA… glutathione peroxidase
1830_slr0947-sacB GTGGTCGATGACGAGGCCAGCATCC… response regulator transcription factor
1514_sll1225-sacB ATGACCAACCAAACTTCTTTCACAA… PIN domain-containing protein
1578_sll1254-sacB ATGCTGGAAATTGTAGCGGCCATTT… hemolysin
1388_sll0236-sacB ATGACCGTTTCTCCCTTTGATTTCA… hypothetical protein
1326_sll1608-sacB ATGACTTTCTCCTTCCCCATGGCCC… DUF3488 domain-containing protein
1136_sll2009-sacB ATGCGTAATCATCAGTCCATCCATC… insulinase family protein
1200_sll1620-sacB ATGGGTGCGCTATTGGCTGTGTTGC… DUF1499 domain-containing protein
0884_slr1537-sacB ATGGTTAATCAGCCCCTAGTAAGCA… glycosyltransferase family 2 protein
0948_sll1131-sacB ATGATTACCAGGGAAACCTTGCCCG… GtrA family protein
0822_sll1971-sacB ATGCACTCACAAAAATTGGTCACAG… glycosyltransferase family 1 protein
0696_sll1915-sacB ATGCCCCTGCATTTCGCCGCCTTGA… hypothetical protein
0506_sll1749-sacB ATGGAATCTCAACTGCAATTCCCCA… DUF29 domain-containing protein
0570_slr1920-sacB ATGTTTCTCAAGATTTTTCAAAAGA… hypothetical protein
0254_sll1654-sacB ATGTCGATCAATTGCTGGCGATCGC… universal stress protein
0318_slr0977-sacB ATGAAAACTTCCCCCCCAGAACTGA… ABC transporter
0002_slr0612-sacB GTGGGGCGTTTGGATCAAGATAGCG… pseudouridine synthase
0128_sll0230-sacB GTGTGTCAAAATCTAGGGAAATTTG… MTH1187 family thiamine-binding protein
0192_slr1107-sacB ATGGCAGGTAACGAGAATATTGCCG… hypothetical protein
3498_slr6043-sacB ATGCTTAATGCCATCCTCAAATGGT… CusA/CzcA family heavy metal efflux RND transporter
3562_slr6107-sacB ATGATTTTATTTCAGGGGAAAGATT… CAP domain-containing protein
3372_sll5049-sacB ATGGCTTCCCTCAATAAACTGGCCA… hypothetical protein
3436_ssl5113-sacB ATGTCCACTGTTACCGAGTCAGACC… hypothetical protein
3246_sll7078-sacB GTGGATGCTAACTTTAATTTTCCTA… TIGR03985 family CRISPR-associated protein
3310_slr8036-sacB GTGCTGTCTCTAGGGCAAATCTATG… GNAT family N-acetyltransferase
3120_slr1182-sacB ATGAATCAATTTAGGGACTGGGGTT… isoprenylcysteine carboxylmethyltransferase family protein
2994_slr1565-sacB ATGCTGCAATTGACCCCCAGTGCCG… iron-sulfur cluster assembly accessory protein
2932_slr1428-sacB ATGGCGATCGCCAATTCCCGTTTTC… GTPase family protein
2742_slr0799-sacB ATGATTCCTCCCGCAAAGCCCGGAG… transposase
2806_sll0740-sacB ATGGCCAAACGGCGATCGACGCAAA… Uma2 family endonuclease
2616_slr0509-sacB ATGTCCCAGTGGATCACAGAATGGA… alkaline phosphatase like protein
2680_slr0110-sacB GTGTCCACACCAAAGATTTTGGCAG… ParA family protein
2364_sll0689-sacB ATGTTTATGAACCCATTGCTCCCTC… Na/H+ antiporter
2428_sll0376-sacB ATGACCCCATCAGATTATCAGGATC… hypothetical protein
2238_sll0005-codA ATGTCTCCAGCCCCCATGCCCGTTA… ABC1-like
2112_slr0359-sacB ATGGACAAGGGAGGAAAGACCTATA… EAL domain-containing protein
2176_sll0749-sacB GTGGAAAAAATCATGAGCGAACAAA… hypothetical protein
1986_sll0142-sacB ATGTCCTCCCCCAACTCCGTTTTTA… efflux RND transporter permease subunit
1924_sll0264-sacB GTGTTTGGCGGAAGTGTCAACGGAA… aromatic ring-hydroxylating dioxygenase subunit alpha
1798_slr1686-sacB ATGGCCGCCATCACCCTCACCCTCC… FHA domain-containing protein
1672_sll1381-sacB ATGGCCAATTTAGAAACCTATGTGC… hypothetical protein
1736_slr1534-sacB ATGTCTTCCCTGCCCAAAAATTTTC… LD-carboxypeptidase
1546_slr0815-sacB GTGTTTTTTTGTTGCCCATTGTTCC… DUF3007 family protein
1610_slr1963-sacB ATGCCATTCACCATTGACTCTGCCC… orange carotenoid-binding protein
1484_slr2125-sacB ATGACGAAAAACACAACCGTAGAGC… DUF115 domain-containing protein
1294_sll1950-sacB ATGTCTTCCCCCAGCCTTTCCCCCC… FkbM family methyltransferase
1168_slr1814-sacB ATGGTTGCTGAACTCCACAAAACCA… DUF29 domain-containing protein
1232_slr0864-sacB ATGCTCCGACTCGAACACATCCGCA… ABC-F family ATP-binding cassette domain-containing protein
0916_slr1748-sacB ATGGCCCTCAAACTTTATTTCCTGC… histidine phosphatase family protein
0854_sll1735-sacB ATGCCTAACATTGTTGAAATTGCGG… fasciclin domain-containing protein
0728_slr1149-sacB ATGACCCCGTCCCCTGCTGCTCCCC… ABC transporter ATP-binding protein
0538_slr2048-sacB ATGCCAAGCCGTCCCTTGGGGCGGA… tetratricopeptide repeat protein
0602_sll0980-sacB ATGGCTAATTCTTCTCCCCCCAATG… ribonuclease HI
0476_sll1647-sacB GTGATCCCATCTGACCTTTTCCTAC… N-acetyltransferase
0350_slr1076-sacB ATGCCTAGAAACCTCAAAGTTCACC… glycosyltransferase family 4 protein
0034_slr1493-sacB GTGGACCGATCGCCGCTAATGCCAT… DUF1636 domain-containing protein
0098_slr0730-sacB ATGGCCAGCACCCCCATCCAGAGCG… DUF3119 family protein
0224_slr1787-sacB ATGGGCGGTTCTGCCAAATTTTTGT… thiamine-phosphate kinase
3530_slr6075-sacB ATGACCAGACTCTTTAACCTAGAAT… hypothetical protein
3531_sll6076-sacB ATGTTCGATAATCTGTGCAAATTTC… Rpn family recombination-promoting nuclease/putative transposase
3405_slr5082-sacB ATGTTTGACAATCTGTGCAAATTTC… Rpn family recombination-promoting nuclease/putative transposase
3469_slr6014-sacB ATGAGTTTACCAACTGAATTGATTG… hypothetical protein
3279_ssl8005-sacB ATGAAACGCCAATCTGTCCTGCAAT… DNA polymerase subunit beta
3343_ssr5020-sacB GTGATTCGTAACTTTAAAGATAAAG… hypothetical protein
3153_sll0564-sacB ATGCCTAGACAGGTTTGGATTTTTC… class I SAM-dependent methyltransferase
3217_slr7049-sacB ATGCTCATTGGTTATATGAGGGTTT… resolvase
3027_slr1586-sacB ATGCAAAAAGACTTGATAGCGCCGA… transposase
3091_sll0445-sacB ATGCAAAAAATTTATGCCATCGGTG… hypothetical protein
2965_slr0656-sacB ATGGCCAAGTCCCATTCTTCTGGTT… GNAT family N-acetyltransferase
2775_sll0672-sacB ATGAAAGCTTGTTGCTATTTTTTCA… cation-transporting ATPase; E1-E2 ATPase
2523_sll0543-sacB ATGTTTAGTTTGAAAAATTATTCCC… DUF2752 domain-containing protein
2271_sll0191-sacB ATGAACAGGGGAGCAAAAGTAAAGA… hydroxylase
2335_slr0468-sacB ATGGCACTCCCGAGCAAATTCAATC… hypothetical protein
2145_slr0771-sacB ATGGCAAACAGGATTAAATTTCATC… hypothetical protein
2209_sll0024-sacB GTGAAAATTACTTGTTTAAAACATA… hypothetical protein
2019_sll1853-sacB ATGGCGATGGAAGTGCAACTATTGT… DUF3750 domain-containing protein
2083_sll0177-sacB ATGCGTATTGTTGCCTACGTTTATT… recombinase family protein, metal-sensing transcriptional repressor
1893_slr0442-sacB ATGAATACTCGCTTTTTCCTCAATT… hypothetical protein
1767_sll1089-sacB ATGAAGTACTCACTATTTGTCGCTA… hypothetical protein
1831_slr0948-sacB ATGAGTGCAGATCCCAATCGTATTG… cofactor assembly of complex C subunit B
1515_ssl2420-sacB ATGAATACCCAATTAGTAGAATCCT… hypothetical protein
1579_slr1342-sacB ATGGCTGACCCCACCAAAATCATTG… four-carbon acid sugar kinase family protein
1389_slr2079-sacB ATGGGGATTGGCGTAAACTCAGATC… glutaminase
1137_sll2008-sacB ATGGATATACGCCTTGTGTCTGTGC… insulinase family protein
1011_sll1268-sacB GTGAACACTGACCTTTGTAGGGATC… hypothetical protein
1075_slr1859-sacB ATGGCTTTCAACATCGAATCGGAAA… STAS domain-containing protein
0823_slr2070-sacB GTGCTAAATGTCCGGAGACTCCACC… DUF1868 domain-containing protein
0633_slr1394-sacB ATGCAAGATTTTGGCGCAGTGTTCC… divergent PAP2 family protein
0507_slr1851-sacB ATGAAAACTATGGATGCCCAGGAAA… pentapeptide repeat-containing protein
0571_sll0998-sacB ATGTCGGATATCCCGTTCACGCTGG… LysR transcriptional regulator
0445_sll1500-sacB ATGTTGACAGTTTATACCCAGTCTG… TIGR00303 family protein
0319_slr0978-sacB GTGCTATTGATTACGATCGCCTTTT… hypothetical protein
0003_slr0613-sacB ATGTCCTATCTAATCGCTGTGGTAG… Cyanobacterial Signature Protein
0129_slr0244-sacB ATGCTTAGCAAAATTTTATACGCAG… universal stress protein
0193_sll1033-sacB ATGCTGATCTGTCTCCAGTGCTCCG… serine/threonine phosphatase
3499_slr6044-sacB ATGAAGTTCTCAATCCCCACCAATC… hypothetical protein
3563_slr6108-sacB ATGCTTGACTTCTCAGCAATTTCTG… hypothetical protein
3437_ssl5114-sacB ATGGCAACCGTTACTGATACAGACC… hypothetical protein
3247_ssr7079-sacB ATGCAACGCAGAAGTACCCAAAGCC… No conserved domains
3311_slr8037-sacB GTGTTTCGATGGTTTATCGCTGCGA… GNAT family N-acetyltransferase
3121_slr1183-sacB ATGTGGGATGAAAGATTTAGCCAGT… class I SAM-dependent methyltransferase
2995_slr1566-sacB ATGGTCACCTTTGTCTTGGCAATTA… glycosyltransferase
3059_slr1652-sacB ATGGGCATTGAGCAAAATAATCCTA… phytol kinase
2869_sll0499-sacB ATGGATGGGGAAGGTAATAAGTTGG… tetratricopeptide repeat protein
2933_sll1334-sacB ATGTTTGTCAATCAACATGGTTACA… GAF domain-containing sensor histidine kinase
2743_slr0800-sacB GTGAAAGGACGAAAGTGTCACCTAA… transposase