Plasmids and Cultures

This database contains entries for 3,572 known and predicted gene coding sequences in Synechocystis sp PCC 6803 based on the Kazusa genome sequence and nomenclature (http://genome.microbedb.jp/cyanobase/GCA_000009725.1). Plasmids for generating marked mutants and mutant strains can be searched for by gene Name/Accession (e.g. 'sll1226' or '1513_sll1226-sacB'),  gene homology (e.g. 'hydrogenase large subunit'), Gene ID (e.g. hoxH), or by a portion of the gene coding sequence Sequence (CDS).

Please note, the library is still being completed. Plasmids and/or marked mutants may not be available. Users can also search for available materials by Plasmids made or Mutant made.

Plasmids, mutants and the unmarking spacer plasmid pUC19K-UL are currently available on request. Regardless of the segregation status of the mutant, open reception of a cyanobacterial mutant strain we recommend 1-2 cycles of restreaking on a selection plate containing kanamycin (100 μg/ml).

Name Sort ascending CDS Gene Homology Gene ID
0572_ssl1911-sacB ATGTCTACTCAACAACAGGCTCGCG… hypothetical protein
0571_sll0998-sacB ATGTCGGATATCCCGTTCACGCTGG… LysR transcriptional regulator
0570_slr1920-sacB ATGTTTCTCAAGATTTTTCAAAAGA… hypothetical protein
0569_slr1919-sacB GTGCCTAACCCCAAACCCCTGCCAC… AarF/ABC1/UbiB kinase family protein
0568_sll1830-sacB ATGATCAATCGTCAGGACCTCAAGC… hypothetical protein
0567_sll1831-sacB GTGTTTTTCCCCATGGTCCCTATGT… glycolate oxidase subunit (Fe-S) protein glcF
0566_sll1832-sacB ATGTCTGCCTTACCCAAACCGGCCT… hypothetical protein
0565_sll1833-sacB ATGGACTCCTCCCACCCAAAACTAA… penicillin-binding protein ftsI
0564_slr1918-sacB ATGTCAGCACTCCCAATCAAGCATT… molecular chaperone DnaJ dnaJ
0563_slr1917-sacB ATGGTCTCCCTGGAATCTTCCCCCC… alpha/beta fold hydrolase
0562_slr1916-sacB ATGCCCACCCTGGATCTTTTGGGTT… alpha/beta hydrolase
0561_slr1915-sacB ATGAGTTTTTTTGATTCAGATATTA… Cyanobacterial Signature Protein
0560_sll1834-sacB ATGATGTCTTTTTTAAGTCCCTTGT… membrane protein
0559_sll1835-sacB ATGGCAACTCACAACCTAGACAGGG… curli assembly protein CsgG csgG
0558_slr1914-sacB GTGATGGTAGGTTCGGGGCAATGTG… hypothetical protein
0557_slr1913-sacB GTGTCTTCCCCGAAAAGCAAAGCCA… hypothetical protein
0556_slr1912-sacB ATGATGTCGTTTAACCCCCAGATTG… anti-sigma F factor antagonist
0555_sll1837-sacB ATGGTTAATAAAGGGTTATGGTCTG… DUF1036 domain-containing protein
0554_slr1911-sacB ATGTTTTCCCCCGACCCCATACTTC… hypothetical protein
0553_slr1910-sacB ATGAACTACTTTTCCTGTTCCCTGC… N-acetylmuramoyl-L-alanine amidase amiA
0552_slr1909-sacB ATGAGCCAATCTAAGGAAAATTATC… NarL subfamily rre9
0551_slr1908-sacB ATGAATAAGTTGACCAGTCATTTAC… hypothetical protein
0550_slr1907-sacB ATGGAGTTGGCGGGCTTGGCTATGG… hypothetical protein
0549_slr1906-sacB ATGGTCAAGTCCACCCCTTCTCCTC… GNAT family N-acetyltransferase
0548_sll1929-sacB ATGCGCTTCCATCCCCTGGCCTTAA… DUF4131 domain-containing protein comEc
0547_sll1930-sacB ATGTTAAGAGAACTAATTAAGCTCT… transposase
0546_sll1931-sacB GTGAATCAAACCAACCTCGACTTTT… serine hydroxymethyltransferase gylA
0545_sll1932-sacB GTGTTAACGAGTATTAACCGCTCTG… DnaK protein dnaK
0544_sll1933-sacB ATGGAACAAGTGCGGAATTATTATC… DnaJ protein dnaJ
0543_slr2053-sacB GTGAAAATTTCCGAACAGACCCTTG… alpha/beta fold hydrolase
0542_sll1934-sacB ATGAATGCGGCAGAACAAGCCATTG… hypothetical protein
0541_slr2052-sacB ATGATTGCCCCTATTTGCCGTGCTC… hypothetical protein
0540_slr2051-codA GTGAGGGTAGAAGGTTATGAAATTG… phycobilisome rod-core linker polypeptide; CpcG cpcG1
0539_slr2049-sacB GTGGATGCAATGGAATTCTTTCGCA… Cyanobacterial Signature Protein Chromophore lyase CpcS/CpeS 2
0538_slr2048-sacB ATGCCAAGCCGTCCCTTGGGGCGGA… tetratricopeptide repeat protein
0537_slr2047-sacB ATGTCCCAAACCACCGCTACCCTGC… phosphate starvation-inducible protein phoH
0536_slr2046-sacB ATGAGCGTCTACAATCTTGATTTGT… cadherin
0535_ssr3467-sacB GTGGCTATTCTCGTTCCTTCCGCTC… hypothetical protein
0534_slr2045-sacB ATGCAACCAATGGCCAGGGGCATAC… metal ABC transporter permease
0533_slr2044-sacB ATGCTAACAGTGCCCAGCCCTAATG… metal ABC transporter ATP-binding protein
0532_slr2043-sacB ATGTTCATTTTCCCCGCTGTTCCCC… periplasmic binding protein component of an ABC type zinc uptake transporter zntC
0531_sll1937-sacB ATGAGTCTTCCCACTCCTTCCCTTG… ferric uptake regulation protein fur
0530_sll1938-sacB ATGGCAACCCTAACCCCGCCAATTA… Uma2 family endonuclease
0529_ssr3465-sacB ATGTTTAAACAATTAGGAGTTCTGG… hypothetical protein
0528_sll1939-sacB ATGACAATATCCCAGGCTCAAAAGG… hypothetical protein
0527_sll1940-sacB ATGTTTAGATTATTCAATTCGGGGA… peptidase
0526_slr2042-sacB ATGTTGCCCACTGCCATTGTCCTCA… zinc-dependent peptidase
0525_slr2041-sacB GTGGAGATCGGTGGGGATAATTTGA… cell division response regulator; DivK rre42/divK
0524_sll1941-sacB GTGGGGAGGAGAATCAGCCTTTCCA… DNA gyrase A subunit gyrA
0523_sll1942-sacB ATGGGCAACATCTTTTTTCCGTGGG… hypothetical protein
0522_slr2038-sacB ATGCCTATTACAGAATTAGCCCCCG… Uma2 family endonuclease
0521_slr2037-sacB GTGCGATTCAACGATTCTGAGCTTC… hypothetical protein
0520_slr2036-sacB ATGATATCAAATTTTGGACATATTG… transposase
0519_ssr3452-sacB ATGGTTGCCCCCGTCAAGCAAAAGA… transposase
0518_slr2035-sacB ATGACAATGGCAATGCAACCCCAAA… glutamate 5-kinase proB
0517_smr0008-sacB ATGTTCGCAGAAGGCAGAATCCCTT… photosystem II PsbJ protein psbJ
0516_smr0007-sacB ATGGACAGAAATTCAAACCCAAACC… photosystem II PsbL protein psbL
0515_smr0006-sacB ATGGCAACCCAAAATCCTAATCAAC… cytochrome b559 b subunit psbF
0514_ssr3451-sacB ATGTCAGGGACTACCGGCGAGCGTC… cytochrome b559 a subunit psbE
0513_slr2034-sacB ATGCCTGTTAAATTCCCCAGTTTGA… photosynthesis system II assembly factor Ycf48 ycf48
0512_slr2033-sacB ATGAGTGAGCGTCCCCCTGAAAAGA… rubredoxin rubA
0511_sll1945-sacB ATGCACATCAGCGAACTGACCCACC… 1-deoxy-D-xylulose-5-phosphate synthase
0510_slr2032-sacB ATGAGTGCAAACCTTGCCCAACTCC… DUF561 domain-containing protein ycf23
0509_sll1946-sacB ATGGTTAAGCAAATTTTGTCTAAAT… phospholipid carrier-dependent glycosyltransferase
0508_ssr3129-sacB ATGTGTTTTTTTATTATCCAAGAGG… hypothetical protein
0507_slr1851-sacB ATGAAAACTATGGATGCCCAGGAAA… pentapeptide repeat-containing protein
0506_sll1749-sacB ATGGAATCTCAACTGCAATTCCCCA… DUF29 domain-containing protein
0505_sll1750-sacB ATGAGTTATCGGATGGACCGCCACA… urease alpha subunit ureC
0504_sll1751-sacB ATGGCTGTTGAACCCATTCCCCCAA… hypothetical protein
0503_slr1849-sacB ATGAATAATTCTACTGTCTCTAGTA… mercuric reductase merA
0502_slr1848-sacB GTGACTCGTATTCTTAAGCTCTCGC… histidinol dehydrogenase hisD
0501_slr1847-sacB ATGGCACAAGGTAAAGGTTTCGGAT… YbaB/EbfC family nucleoid-associated protein
0500_slr1846-sacB ATGAATCCGGAAACGAAAGCAAGAA… Grx4 family monothiol glutaredoxin grxD
0499_ssr3122-sacB ATGATTAGTCTTGATCAAGTCAAAC… BolA family transcriptional regulator
0498_sll1752-sacB ATGACCAATTCTCCCCTGGCGATCG… 1-acyl-sn-glycerol-3-phosphate acyltransferase
0497_sml0005-sacB ATGGAAACAATTTATTTGCTCGCTA… photosystem II PsbK protein psbK
0496_sll1635-sacB ATGGATGTTCGTTTCATTTCCCTCA… FAD-dependent thymidylate synthase
0495_slr1771-sacB ATGGTTACCAGGGATGGGATCCGCT… CocE/NonD family hydrolase
0494_slr1770-sacB ATGCACTATACCTTTGATATTTTGG… hypothetical protein
0493_sll1636-sacB GTGCCTGGCGGGATTAACCCCCATT… ferripyochelin binding protein fbp
0492_slr1768-sacB ATGGGTGCTGTTATCTCGGCGATCG… prohibitin family protein
0491_sll1638-sacB ATGTCTCGTTTACGTTCGTTACTTT… photosystem II protein PsbQ psbQ
0490_sll1639-sacB ATGGTTGAATGCTTGGTGCAGGCTC… urease accessory protein D ureD
0489_sll1640-sacB ATGATTTATCTAACCCGTCTTCAGC… carbon-nitrogen hydrolase family protein
0488_slr1767-sacB ATGAATATTTGGGTTGATGCTCAAC… hypothetical protein
0487_ssr2962-sacB ATGAATAGCTTACTGTCTCGCATTA… DUF433 domain-containing protein
0486_sll1641-sacB ATGGTGCATAAAAAAATTGACCTCA… glutamate decarboxylase gad
0485_slr1764-sacB ATGTTAAGCTTAGAAAAAGGTCAGT… cAMP binding protein capA
0484_sll1642-sacB ATGATGGATTTAGGGGAGTGCTTGC… hypothetical protein
0483_slr1763-sacB ATGCAGTGCCGTGTTTGTGATTCTA… class I SAM-dependent methyltransferase
0482_slr1762-sacB GTGTATCTGGAAAAACTCACCGTGG… HAD family hydrolase
0481_sll1643-sacB GTGGATAAAGCCCAATTACGAGCCC… 5-formyltetrahydrofolate cyclo-ligase
0480_slr1761-sacB ATGAGGGGAAGAACCCATGGGATAA… FKBP-type peptidyl-prolyl cis-trans isomerase ytfC
0479_slr1760-sacB ATGAATCTGCCTCAACCAATAGAAA… regulatory components of sensory transduction system rre8
0478_slr1759-sacB ATGGTTATTAGTGCCACTGTGATAT… hybrid sensory kinase hik14
0477_slr1756-sacB ATGGCCAGAACCCCCCAGGAAGTCC… glutamate--ammonia ligase glnA
0476_sll1647-sacB GTGATCCCATCTGACCTTTTCCTAC… N-acetyltransferase
0475_slr1755-sacB GTGGTCATAATGGAGGCGAAGTCAA… NAD+ dependent glycerol-3-phosphate dehydrogenase gpsA
0474_slr1753-sacB GTGGTGGAAATATTGTTAATTTCAC… CHAT domain-containing protein
0473_ssl1918-sacB GTGTTATTTACAGGCACGGCTATGG… hypothetical protein
0472_sll1001-sacB ATGACGGAACCCCTTATTCAACTCC… ABC transporter
0471_sll1002-sacB ATGCTCAGACCCCGCACCATCAAAG… MCE family protein ycf22
0470_ssl1920-sacB ATGATACCGAGAGAATTTTACAGCA… transposase
0469_ssl1922-sacB ATGGCGAACGCTCTATGGTTATTTT… transposase
0468_ssl1923-sacB GTGTTGCGTCTGTTAAACCGTCGCT… DUF4351 domain-containing protein
0467_sll1003-sacB ATGTCTGTTTTCTTGCTCGGTTCTG… sensory transduction histidine kinase hik13
0466_sll1004-sacB ATGCTGATCATTGCCATACTCTGCT… glycosyltransferase
0465_sll1005-sacB ATGGATGCCACTGCCCCCATTCTCC… regulatory protein for beta-lactamase
0464_sll1006-sacB ATGGAGGAAAATTTGGGCATGGACA… hypothetical protein
0463_slr1056-sacB ATGGAATTAAAAAGTGTTAAATTAA… ATP-dependent endonuclease
0462_slr1055-sacB ATGTTTACTAACGTCAAGTCCACCA… Mg-chelatase subunit; ChlH chlH
0461_sll1009-sacB ATGGCTCTCATTAACGGAACGAATG… iron-regulated protein frpC
0460_slr1053-sacB ATGGAATGGTTCGCCATTGCCCTGT… DUF2993 domain-containing protein
0459_slr1052-sacB ATGGGATCCGAGTATCAAGGCCAAT… tetratricopeptide repeat protein
0458_slr1051-sacB ATGGCTCCCCAGACTAATTTTTCAG… enoyl-acyl-carrier-protein reductase envM/fabl
0457_slr1050-sacB ATGCTTAACCAGTTCCCGAAGCTTC… phospholipid carrier-dependent glycosyltransferase
0456_ssr1736-sacB ATGGCAGTTCCCAAGAAGAAAACCT… 50S ribosomal protein L32 rps32
0455_sll1011-sacB GTGGGCCATTGCACAGCGGTGATTA… hypothetical protein
0454_slr1048-sacB ATGGTGCCCCAACAATTAATTTTAA… exonuclease subunit SbcC sbcC
0453_slr1047-sacB ATGCAAAATCTTTCCCTGCAAAAAG… diguanylate cyclase pleD
0452_slr1046-sacB ATGGCATTGACCTTGGTTATGGGAG… TatA/E family twin arginine-targeting protein translocase pilA3
0451_slr1045-sacB ATGTCGGATCGAGGCTCTCGCCACT… ABC transporter permease
0450_slr1044-sacB ATGGCAACAGAAACCAATTTTTCGC… methyl-accepting chemotaxis protein mcpA
0449_slr1043-sacB GTGGGGAAATCTATGGTTAGTTCTA… hypothetical protein
0448_slr1042-sacB ATGATGGAAAATAAACCAGGCAGGA… CheY subfamily
0447_slr1041-sacB ATGCAGGGAACCCTGAACGAAATTG… PatA subfamily rre6
0446_slr1609-sacB GTGGACAGTGGCCATGGCGCTCAAT… long-chain-fatty-acid CoA ligase
0445_sll1500-sacB ATGTTGACAGTTTATACCCAGTCTG… TIGR00303 family protein
0444_sll1501-sacB ATGACGGTAATTATTGCGGGGGAAA… cobyrinic acid ac-diamide synthase cbiA/ cobB
0443_slr1608-sacB ATGTTGATCCCATTTCTGTTTAAGC… glucose dehydrogenase-B gdhB
0442_ssr2711-sacB GTGGGTTTGCAACGGTGGCAGGGTA… hypothetical protein
0441_ssr2708-sacB ATGAGCGTAGCCCTAGATCGGCAAA… hypothetical protein
0440_sll1502-sacB ATGCCCTGCCACGAAGGTCTTCACC… glutamate synthase (ferredoxin) gltB
0439_sll1503-sacB ATGAAGTTTGCAACCTATGAGCATT… hypothetical protein
0438_sll1504-sacB ATGGAAACAACAAATTTACCGATGG… hypothetical protein
0437_sll1505-sacB ATGCAACGTAATCAAGAATCCCTTA… DUF86 domain-containing protein
0436_ssl2920-sacB ATGCTAAAAACATCAGAATTTCAAA… hypothetical protein
0435_ssl2922-sacB ATGAACACAGCTCAAATTAGCACCG… virulence associated protein B vapB
0434_ssl2923-sacB ATGAAGTATTTACTAGATACGAATA… virulence associated protein C vapC
0433_ssr2699-sacB GTGAAAAAGGCTGGCGCTGGACAAG… transposase
0432_slr1604-sacB GTGAGCAAAAATAATAAAAAATGGC… cell division protein; FtsH ftsH
0431_slr1603-sacB ATGATTGTCGCCTCCGAGGGCAGTG… hypothetical protein
0430_sll1507-sacB GTGGATTTAGTGGTTATGAATGTGC… alpha/beta hydrolase
0429_sll1508-sacB ATGGGACATACTATCAAAGCACCTC… UDP-3-o-acyl N-acetylglcosamine deacetylase lpxC
0428_slr1601-sacB ATGACTGCCCAAACTTTCAAACCCA… hypothetical protein
0427_smr0005-codA ATGGCATTATCCGACACCCAAATTT… photosystem I PsaM subunit psaM
0426_slr1600-sacB ATGGACGATACTAACACCACATTAC… hypothetical protein
0425_slr1599-sacB GTGAGTATTCCCCTGGCTACGGGAT… hypothetical protein
0424_sll1509-sacB ATGCAGCGCACCCGATTAAATACCA… Ycf20-like protein ycf20
0423_sll1510-sacB ATGGCATCATTAATCAGCTTTTGGT… sterol desaturase family protein
0422_sll1511-sacB ATGACGCTGTTAAGTAAACTCCTAG… hypothetical protein
0421_slr1598-sacB GTGACCGTCAAACCGGATTGGCTCC… lipoic acid synthetase lipA
0420_sll1512-sacB ATGGAAAAGGTTTTCCCTCATACTG… HxlR family transcriptional regulator
0419_sll1513-sacB ATGAATCTAGTCAGCCTCGAAAGTT… c-type cytochrome synthesis protein ccsA
0418_sll1514-sacB ATGTCTCTCATTCTTTACAATCCCC… Hsp20/alpha crystallin family protein hsp17
0417_slr1597-sacB ATGGCCAAAATCATTAGCACCGTCA… ParA family protein
0416_sll1515-sacB ATGCAATTAAGTTACCGTGGAGTCA… DUF4278 domain-containing protein
0415_slr1596-sacB ATGGATTTAACAAATTGGTGGCAAG… proton extrusion protein PcxA pxcA
0414_sll1516-sacB ATGGGCAAAACCCCCCTGGGACTGA… hypothetical protein
0413_slr1595-sacB ATGGACACCAATACTTTACTGCTAA… Na/H antiporter rre5
0412_slr1594-sacB ATGACTGCTTTGATCTTGCCTTTTT… PatA subfamily rre5
0411_slr1593-sacB ATGTTTATATTTCCACGCTTTCCCC… EAL domain-containing protein
0410_slr1592-sacB GTGCTGGACTTCTACTCCCAACGCT… RluA family pseudouridine synthase
0409_slr1591-sacB ATGGCCAAAAAACTATTACTGGTGG… hypothetical protein
0408_slr1590-sacB GTGAGTAAGCCAATCTTTAAGTTAG… hypothetical protein
0407_slr0695-sacB ATGAGAAAAAGACTCACCCGTTTCC… hypothetical protein
0406_sll0634-sacB GTGGATTTATTTCAAACTTTTCAGA… BtpA/SgcQ family protein btpA
0405_sll0635-sacB ATGCAACAAGCTTCCCCCACGGCGA… thiamin biosynthetic bifunctional enzyme thiE
0404_slr0692-sacB ATGTCGGAACTTAGCCTGGCCCATC… AAA family ATPase ycf45
0403_sll0638-sacB ATGAAAACTACCACACACAGCAGGG… CHAT domain-containing protein
0402_sll0639-sacB ATGGCTTCTGTTTCCTCCCAGCCTG… bifunctional oligoribonuclease/PAP phosphatase NrnA nrnA
0401_slr0689-sacB ATGGCGACGATCGCCGAGATTAATG… hypothetical protein
0400_ssr1155-sacB ATGAGTCAAACTAACTACTATCAGA… DUF2949 domain-containing protein
0399_slr0688-sacB ATGCGTGTCATTCTGTGTGGTTACT… polysaccharide pyruvyl transferase CsaB casB
0398_sll0640-sacB ATGGCCTTTTTGCAAACCTGGCTGG… sulfur deprivation response regulator Sac1
0397_sll0641-sacB ATGGCCAAACTAAATCTTGCCCATC… hypothetical protein
0396_slr0687-sacB GTGACTTTTTACCAGCGCAGACTGC… diguanylate cyclase pleD
0395_sll0643-sacB ATGGCTCAAACTCCCCTCCGCATTG… urease accessory protein G ureG
0394_slr0686-sacB ATGACTAACCAACCCAACCAAGTGG… DUF4870 domain-containing protein
0393_sll0644-sacB ATGGTTTATGCCCCTCGCCCATTGC… alpha/beta hydrolase
0392_sll0645-sacB ATGTCTAACCGCCCAGGAAAGTTAC… DUF928 domain-containing protein
0391_sll0646-sacB ATGGGTTGGACCATACCGTCAGCTT… adenylate cyclase cyaA
0390_sll0647-sacB GTGGCCGCTAACCTAACCTTTCTTG… MBL fold metallo-hydrolase
0389_sll0648-sacB ATGCTCGGCGGTCAATATTATCTCA… lipophilic protein lim
0388_sll0649-sacB ATGTGGGGGAACAGGACTGAATTTA… OmpR subfamily rre3
0387_sll0650-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
0386_sll0651-sacB ATGTTAAGAGAACTAATCAAGCTCT… transposase
0385_slr0682-sacB ATGTTACGTCTCATCACCCAGTCCG… histidinol dehydrogenase hisD
0384_slr0681-sacB GTGGTCTGCTCTATAGTGACGGCGA… calcium/sodium antiporter
0383_slr0680-sacB ATGACAAAAACTGCTAAAACTAAAC… tellurium resistance terB-like protein
0382_slr0679-sacB ATGATTTCGGCTCGACAATTGGCCT… Fmu and Fmv protein fmu/fmv
0381_slr0678-sacB ATGGCATCTTCCCCTAAAGCCCCCA… biopolymer transporter ExbD exbD
0380_slr0677-sacB GTGAATCCCATTGAGTTGATGCAAA… biopolymer transport ExbB protein exbB
0379_slr0676-sacB ATGCAACAACGTGGCGTAACAATTT… adenylylsulfate 3-phosphotransferase cysC
0378_sll0654-sacB ATGACCATTAACAGCGGCGTTAGTT… alkaline phosphatase
0377_sll0656-sacB GTGTCTAACTTAATTATTACCGGTA… extracellular nuclease nucH
0376_slr0670-sacB ATGTTTAAGCATTGCCTCATTTGTA… universal stress protein
0375_slr1400-sacB ATGGGAACAGCTTCCCTTCTGGTGG… hybrid sensory kinase hik38
0374_sll1017-sacB ATGAAACCGAAAAATTTTCCCCTTG… ammonium/methylammonium permease amt2
0373_sll1018-sacB ATGGAAACGCAATGTCGACCCCAGG… dihydroorotase pyrC