Plasmids and Cultures

This database contains entries for 3,572 known and predicted gene coding sequences in Synechocystis sp PCC 6803 based on the Kazusa genome sequence and nomenclature (http://genome.microbedb.jp/cyanobase/GCA_000009725.1). Plasmids for generating marked mutants and mutant strains can be searched for by gene Name/Accession (e.g. 'sll1226' or '1513_sll1226-sacB'),  gene homology (e.g. 'hydrogenase large subunit'), Gene ID (e.g. hoxH), or by a portion of the gene coding sequence Sequence (CDS).

Please note, the library is still being completed. Plasmids and/or marked mutants may not be available. Users can also search for available materials by Plasmids made or Mutant made.

Plasmids, mutants and the unmarking spacer plasmid pUC19K-UL are currently available on request. Regardless of the segregation status of the mutant, open reception of a cyanobacterial mutant strain we recommend 1-2 cycles of restreaking on a selection plate containing kanamycin (100 μg/ml).

Name Sort ascending CDS Gene Homology Gene ID
1172_sll1695-sacB ATGAAAGCCCAATTTTCTATCGGTA… general secretion pathway protein G hofG; PilA2
1171_sll1696-sacB ATGGTATTTAAGCTGAATTTACACG… hypothetical protein
1170_slr1816-sacB ATGAAAATTGAAAAGCAAGTTAATG… hypothetical protein
1169_slr1815-sacB ATGACTCAAACTGAGATTATTAAGT… methyltransferase domain-containing protein
1168_slr1814-sacB ATGGTTGCTGAACTCCACAAAACCA… DUF29 domain-containing protein
1167_slr1813-sacB ATGGTTGCCGAACTCCGCAAAACTA… DUF29 domain-containing protein
1166_slr1812-sacB ATGGTTGCTGAACTCCGCAAAACAA… DUF29 domain-containing protein
1165_slr1811-sacB ATGATTGAGGAAGGTTGCATGGTTG… DUF29 domain-containing protein
1164_sll1697-sacB ATGGTCAAATCCGTTAGCTTGCTCC… thylakoid-associated protein
1163_sll1698-sacB ATGCTCATGGACTGGATTCCTTTCG… hypothetical protein
1162_sll1699-sacB ATGCGTTGGGGAAACAAAGTAGCAA… ABC transporter substrate-binding protein
1161_slr1809-sacB ATGGCATTGGTCCACAGCGGAGTAA… hypothetical protein
1160_slr1808-sacB GTGGTCTGCCATTCGGACTACATTG… transfer RNA-Gln reductase hemA
1159_slr1807-sacB ATGCAGTTAGTTAATCTTCATCCCC… alpha/beta hydrolase
1158_sll1702-sacB ATGGACGTTACCATTTATCTCCGTT… Ycf51-like protein
1157_sll1703-sacB ATGAAGAACTTTTTCCAACAAATGG… protease IV sppA
1156_sll1704-sacB ATGGCAAATCAGAATTTTCCAGCCC… cell-cell signaling protein C-factor csgA
1155_slr1805-sacB GTGCCCCGTCGCCCATTGTCAGACT… sensory transduction histidine kinase hik16
1154_sll1708-sacB ATGGATTTTACTTCCCCCCATAGGG… NarL subfamily; response regulator transcription factor rre17
1153_ssl3291-sacB ATGGCCAAAGCAATCTGGAATGGGG… DUF427 domain-containing protein
1152_sll1709-sacB ATGGAATTAACTGGAAAAACAGCCC… glucose dehydrogenase gdh
1151_sll1710-sacB ATGATAATTCGAGAATTTTACAGCA… transposase
1150_slr1803-sacB GTGAAAATTAAACAAGCTATTGCCA… adenine-specific DNA metylase mbpA
1149_slr2144-sacB GTGCCATCTCCGCTAACCTCTCCAT… Cyanobacterial Signature Protein
1148_sll2002-sacB ATGGGCGTTACCTGGGAATTGGATT… DUF1092 family protein
1147_slr2143-sacB ATGGCTGACCCTGTGAACCTGATAC… isopenicillin N epimerase cefD
1146_sll2003-sacB GTGATGGGCAGTTACCATCTGCTGG… glycosyltransferase family 39 protein
1145_slr2141-sacB ATGGAAACCGGGCCACAGGTCTGGG… methylenetetrahydrofolate reductase
1144_sml0007-sacB ATGGATTGGCGTGTAATTGTAGTTG… photosystem II protein Y psbY
1143_ssl3829-sacB ATGGTCGATCCACTGATGTACCAAG… chlororespiratory reduction protein 7
1142_sll2005-sacB GTGACCATGACGACCACGAACTACG… DNA gyrase B subunit gyrB
1141_sll2006-sacB ATGCAAATTACTCTAGACATCCCCG… hypothetical protein
1140_sll2007-sacB ATGAGTAAGAGCTATATTTCCCCAT… HNH endonuclease
1139_slr2136-sacB ATGGTAACCGCTTCCCTGCCGACCC… GcpE protein gcpE
1138_slr2135-sacB ATGCTAGGGTTGGGGACTAAGTTTA… hydrogenase accessory protein hupE
1137_sll2008-sacB ATGGATATACGCCTTGTGTCTGTGC… insulinase family protein
1136_sll2009-sacB ATGCGTAATCATCAGTCCATCCATC… insulinase family protein
1135_sll2010-sacB ATGCCCCAGGCTTGTGTAATTGGGT… UDP-N-acetylmuramoylalanine--D-glutamate ligase murD
1134_sll2011-sacB ATGAGTATGGGCCCCATTTCTGAAT… 7-carboxy-7-deazaguanine synthase QueE queE
1133_sll2012-sacB ATGACTGCCAGAACCAGCCCCGATT… RNA polymerase sigma factor rpoD
1132_sll2013-sacB ATGCGAGTTACCTTTTCCGCCACCG… DUF1997 domain-containing protein
1131_sll2014-sacB ATGGACTTTCTCTATCCCTATCCGC… sugar fermentation stimulation protein sfsA
1130_sll2015-sacB ATGGCCACCACCGCCGATGACGTCT… hypothetical protein
1129_slr2132-sacB ATGACGAGTTCCCTTTATTTAAGCA… phosphotransacetylase pta
1128_slr1888-sacB ATGCCCAACTCTGATCGCCAGGAAC… GNAT family N-acetyltransferase
1127_slr1887-sacB ATGACTGTTTCGACCTCTGCTCCCA… porphobilinogen deaminase hemC
1126_sll1755-sacB GTGAAGCAATGGAGGAAACTCCCTA… hypothetical protein
1125_slr1886-sacB ATGACTGAAATTTCCCGCTTCGATG… putative iojap protein; ribosome silencing factor rsfS
1124_slr1885-sacB ATGGTTGAGTTAGACCGGAGTCGGG… HD domain-containing protein
1123_ssr3189-sacB ATGGCAAAACGTCGTAATTTAAAGA… Cyanobacterial Signature Protein
1122_slr1884-sacB ATGAAGAATTGTGAAAATGATCACA… tryptophanyl-tRNA synthetase trpS
1121_ssl3364-sacB ATGAGCAATATTCAAGAAAAAATCG… hypothetical protein
1120_ssr3188-sacB ATGAGCCTCCCCGCACCGGAAACTC… DUF3143 domain-containing protein
1119_sll1757-sacB ATGGGGGGAAAGTGCTTAGCTAAGA… hypothetical protein
1118_slr1882-sacB GTGGTGTTGCGTCAGGTGATGGATT… riboflavin biosynthesis protein RibF ribF
1117_slr1881-sacB ATGTCTGACCTCCTCGTTGTTAAGG… high-affinity branched-chain amino acid transport ATP-binding protein; BraG livF
1116_ssr3184-sacB ATGCCCCATACCATTGTTACGGAAA… ferredoxin
1115_sll1758-sacB ATGGTTGCTTCCCCCATCCACAGTC… phosphoglucosamine mutase
1114_slr1880-sacB ATGAAATCCACTGGAGAAACACTGA… aminoglycoside phosphotransferase family protein
1113_sll1760-sacB ATGGTCAGCTTTACCGTTTCTGTGC… homoserine kinase thrB
1112_sll1761-sacB GTGAACAGGCTGAGCAAAATGTATG… DUF922 domain-containing protein
1111_slr1879-sacB ATGACCTTTGGCATTCTCCACGGTG… S-adenosyl-methionine: precorrin-2 methyltransferase cbiL
1110_sll1762-sacB ATGATTTGTTCTGCTACCCCCGATC… amino acid ABC transporter substrate-binding protein
1109_sll1763-sacB ATGAACTCTAACCAACTTAGCTGGA… rSAM-associated Gly-rich repeat protein grrA
1108_sll1764-sacB ATGGCTATCAATAACCGCTCTAGCT… rSAM-associated Gly-rich repeat protein grrA
1107_sll1765-sacB GTGATAGTCTCCCTGGCAATTGTTG… hypothetical protein
1106_sll1766-sacB ATGCAAGCTTTAGTCAACCAAACCC… putative arylsulfatase regulatory protein aslB/grrM
1105_slr1878-sacB ATGAGTGAACCTAACCTCAACCCCG… phycocyanin alpha phycocyanobilin lyase; CpcE cpcE
1104_slr1877-sacB ATGGTCCAACGTTACGTTCGTATCC… 5-oxo-125-tricarboxilic-3-penten acid decarboxilase/isomer hpcE
1103_sll1767-sacB GTGCTTGTGAATAGTTACGAACTGA… 30S ribosomal protein S6 rps6
1102_slr1876-sacB ATGCCAGGCCAATCCACCAAGTCCA… hydrogenase maturation protease
1101_ssl3379-sacB GTGATTAGCAACGCCGCCACCAGCA… ATP-dependent Clp protease adapter ClpS clpS
1100_slr1875-sacB ATGGCCCGTTTGTCCCAGGAATTGC… exopolysaccharide synthesis protein; ExoD exoD
1099_slr1874-sacB ATGCGTGTGGGGCTGTTATTTGGTG… D-alanine:D-alanine ligase-related protein ddlA
1098_sll1768-sacB ATGCCCATGTCCCCCTTGCCCCCTG… OppB in a binding protein-dependent transport system
1097_ssl3382-sacB ATGCTGGATAAAACCACGTTGCAAG… hypothetical protein
1096_ssl3383-sacB ATGCGCATTTTAGCTCCCCATCCCC… hypothetical protein
1095_sll1769-sacB ATGCAAAACCAAGTCCTCCAGGCCT… thylakoid lumen protein
1094_sll1770-sacB GTGTCTGCCCTATCCACTAAGCTTG… ABC1-like
1093_sll1771-sacB GTGACAGAAGTGAATTTATCAGTTG… serine/threonine-protein phosphatase
1092_sll1772-sacB GTGAGTGATTCCACCAATTTAACCA… DNA mismatch repair protein; MutS mutS
1091_slr1871-sacB ATGGACAAACTTGAAAGTATTTACG… transcriptional regulator
1090_sll1773-sacB ATGATCACACTCCGCCCCTCCGAAG… pirin family protein
1089_slr1870-sacB ATGCCGCAATCGGAATCAAACATTG… NYN domain-containing protein
1088_slr1869-sacB ATGATAACTATGAATTTTAAACTGG… hypothetical protein
1087_sll1774-sacB ATGTTTGACAATCTGTGCAAATTTC… Rpn family recombination-promoting nuclease/putative transposase
1086_sll1775-sacB ATGTCCCTGTTAGTCCAGAAACCTG… hypothetical protein
1085_sll1776-sacB ATGGAAAAATCCCGTCAGTTTGACC… deoxyribose-phosphate aldolase deoC
1084_slr1867-sacB GTGAATACCACGGCTTCTTCCCCTT… anthranilate phosphoribosyltransferase trpD
1083_slr1866-sacB ATGCAAAGCTGGCGACACAGGTTCC… hypothetical protein
1082_slr1865-sacB GTGTTAAACATATGGTGGAGTGAAG… carbohydrate ABC transporter substrate-binding protein
1081_slr1864-sacB ATGAATTCATTCTTGATTATTATTT… AEC family transporter
1080_slr1863-sacB GTGATCGCCGATTTAAATACGGTTA… hypothetical protein
1079_sll1780-sacB ATGATATCAAATTTTGGACATATTG… transposase
1078_slr1862-sacB ATGGCGATGTTACCTCTGCCAAACT… hypothetical protein
1077_slr1861-sacB ATGACTATTTTAAATTTTTCCGCTG… anti-sigma regulatory factor
1076_slr1860-sacB ATGAAAATGAAACTGATTCAACCTT… ICFG protein icfG
1075_slr1859-sacB ATGGCTTTCAACATCGAATCGGAAA… STAS domain-containing protein
1074_slr1857-sacB ATGGAACGCATAGATATTCATCCCA… glycogen operon protein; GlgX glgX
1073_slr1856-sacB ATGGATATTCAAATTAATCAACAGG… anti-sigma B factor antagonist
1072_slr1855-sacB ATGAGTCCCAAAATTAACTTTCCTT… AGE family epimerase/isomerase
1071_slr1854-sacB ATGACCACAACAAAAGGTAAGATTG… thimanine synthesis protein ThiJ thiJ
1070_slr1853-sacB ATGAGTGAGTTTAAAAACGCTGTGC… carboxymuconolactone decarboxylase family protein
1069_slr1852-sacB ATGTCATCAAGAAAAAATTACTACT… hypothetical protein
1068_sll1783-sacB ATGAGAGCTGATTTTTTTCTGTCTG… antibiotic biosynthesis monooxygenase
1067_sll1784-sacB ATGAAAACTTTACGTTTATCCCCAT… hypothetical protein
1066_sll1785-sacB ATGCTATTGAAAGTCAAACTTTGGG… hypothetical protein
1065_sll1304-sacB ATGATTTCTTCCCCCAAAATCAAGT… sugar phosphate isomerase/epimerase
1064_sll1305-sacB ATGAATAGCCCCTTTATTCCTATCG… alpha/beta hydrolase
1063_sll1306-sacB ATGCAAAGAAGAGATCTGTTTAAAT… hypothetical protein
1062_sll1307-sacB ATGCTCAAATTTACTTTTACTCCGC… heme-binding protein
1061_slr1410-sacB ATGAAACATAAATTTCTAGTTAGTT… beta transducin-like protein
1060_slr1409-sacB ATGCGTATTTTTCCTGTATTTTTAC… beta transducin-like protein
1059_slr1407-sacB ATGAAACAGGTTAATTTTTTAGCTG… hypothetical protein
1058_slr1406-sacB GTGAAAGTGAGCAAACGTTTTTTCC… heme-binding protein
1057_sll1308-sacB ATGCCCATGGCCATCGATATTAGCA… SDR family oxidoreductase
1056_slr1403-codA ATGGCTGCCTCTACCCAGACTCCGG… hypothetical protein
1055_sll1314-sacB ATGAAACATTCACGGAGAAATTTTC… C4-dicarboxylase binding protein dctP
1054_sll1315-sacB ATGAAGCATATATTTAGGTTTAAAA… hypothetical protein
1053_ssl2595-sacB GTGGCTAAGTATGTGCTTTGGGGAA… hypothetical protein
1052_smr0009-sacB ATGGAATCCGCAACAGTTCTTAGCA… photosystem II PsbN protein psbN
1051_ssl2598-sacB ATGGCACAGCGCACTCGGTTAGGAG… photosystem II PsbH protein psbH
1050_sll1316-sacB ATGTTAGTAAAAATCCTTAAATTTA… plastoquinol--plastocyanin reductase petC1
1049_sll1317-sacB ATGAGAAACCCTGATACTTTGGGGC… apocytochrome f petA
1048_sll0860-sacB ATGCTCAGCTTGAGTTATGTCGTCG… Cyanobacterial Signature Protein
1047_sll0861-sacB ATGCCTATGGAAATCTTAGAAGAGC… N-acetylmuramic acid 6-phosphate etherase murQ
1046_sll0862-sacB ATGCCCACTACCCTAGACCAGTTTT… site-2 protease family protein
1045_sll0863-sacB GTGAAAATTTCAACATCCATGCCCC… hypothetical protein
1044_sll0864-sacB GTGGTCCAACTAAGTCTGAGTCAAG… M67 family peptidase
1043_slr0891-sacB ATGATGGCAATGGAATCTTGGTTGG… N-acetylmuramoyl-L-alanine amidase amiA
1042_sll0865-sacB ATGGTTGCTACTGTTTCCTCTACGT… excinuclease ABC subunit C uvrC
1041_slr0890-sacB ATGGGTTTAGTTTATGCCAATATTG… clan AA aspartic protease
1040_ssr1499-sacB ATGGACGTGTTACTCGATCGCCTAA… hypothetical protein
1039_slr0889-sacB ATGTTTGCCTTACCTCAAGCCGGCG… AarF/ABC1/UbiB kinase family protein
1038_slr0888-sacB ATGAACCGTACCGCTAAATTAACCG… hypothetical protein
1037_slr0887-sacB ATGTTGTACTGGTGGGATGGACAAT… hypothetical protein
1036_slr0886-sacB ATGACGGCATTAACGGCACAGGTGG… 3-oxoacyl-acyl-carrier protein reductase fabG
1035_sll0867-sacB GTGCCCAGGGGGCTTTGGGTTACCC… aldo/keto reductase
1034_sll0868-sacB GTGCCCCAACAATCATTTATGAATG… lipoic acid synthetase lipA
1033_sll0869-sacB GTGAAAATTGATGTTGACTATGCCA… Leu/Phe-tRNA-protein transferase aat
1032_slr0885-sacB ATGACAACTACCCTTAAACTACAGC… Uma2 family endonuclease
1031_slr0884-sacB GTGACCGGGTCATTTTTTTGCTATT… glyceraldehyde 3-phosphate dehydrogenase gap1
1030_sll0871-sacB ATGAACACTTTTTTGGCATCCCCTA… hypothetical protein
1029_slr0883-sacB ATGGCGAATAGTACCGAGTCTGGTT… regulation of penicillin binding protein 5 production psr
1028_slr0882-sacB GTGACTATGGCCGTTGGCACCTTCA… YjgP/YjgQ family permease
1027_sll0872-sacB ATGGCTGGGGGCATTTTAAAGACTG… hypothetical protein
1026_slr0881-sacB ATGTTGGCCCTAATTTTGGCGATCG… hypothetical protein
1025_ssl1633-sacB ATGGGCGCAATACTCTGTTACATTT… CAB/ELIP/HLIP superfamily hilC/scpB
1024_sll0873-sacB GTGAGCAGTTTTGCGGTGAACATTC… carboxynorspermidine decarboxylase napC/nspC
1023_slr0880-sacB ATGCAAGCTGTTGATTACACTACCC… secreted protein MPB70 precursor
1022_slr0879-sacB ATGGAACTGGAACATCCTGACGATC… glycine decarboxylase complex H-protein gcvH
1021_slr0878-sacB ATGACTCCCCATGTGGTGAAAGCTG… M23 family metallopeptidase
1020_slr0877-sacB ATGTCGCTTATTCGTGCCCTGCACC… Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA gatA
1019_ssr1480-sacB ATGTCCATTTATGTCGGGAACCTTT… RNA-binding protein
1018_slr0876-sacB ATGAGTGCATTGAACCATCAAATCA… NAD(P)/FAD-dependent oxidoreductase
1017_sll0875-sacB ATGGACAATTCCCTGCTCAGCGAAA… TIGR00297 family protein
1016_sll0876-sacB ATGATTCAATTTCTTCAGGGCCAGG… Holliday junction DNA helicase; RuvA ruvA
1015_slr0875-sacB ATGGTTAAAAGTGCAAGGCAAGGGG… large-conductance mechanosensitive channel mscL
1014_sll0877-sacB ATGAAACCAACTGGTTGGAACCAAT… hypothetical protein
1013_sll1265-sacB ATGAGCAATAATCCTTCCCCTCACA… hypothetical protein
1012_sll1267-sacB GTGGGGCAAATTTCAACTTTTACGG… hypothetical protein
1011_sll1268-sacB GTGAACACTGACCTTTGTAGGGATC… hypothetical protein
1010_slr1369-sacB ATGCCCACCCAGCGAATTATTAGTG… CDP-diacylglycerol synthase cdsA
1009_slr1368-sacB ATGCCACTAGGATTGTATCGGCCAT… precorrin decarbocylase cbiT
1008_slr1367-sacB GTGATGTCACCCCGACTTTTTCATC… glycogen phosphorylase glgP
1007_ssl2501-sacB ATGAACACCCAGTTTTTTGAAGAAT… phasin PhaP phaP
1006_sll1270-sacB GTGAAGGGCATGGTTAAACTGGGCC… glutamine-binding periplasmic protein/glutamine transport system permease protein glnH/glnP
1005_sll1271-sacB ATGAACTTCACTAAACAGTTTACTT… Cyanobacterial Signature Protein
1004_sll1272-sacB ATGTCAGAGATTGAGGAATCAGCAA… DUF4393 domain-containing protein
1003_sll1273-sacB ATGAAATTATCCGATAAAGGTCTTA… hypothetical protein
1002_slr1366-sacB ATGGCCCGGTCTTTTTCCCTCGCTA… lipoprotein signal peptidase lspA
1001_slr1365-sacB GTGAATACCAATCCTGAACCTGACC… BioY protein bioY
1000_slr1364-sacB GTGGTTCTAGCATCTTCCCGTCCCC… biotin synthetase bioB
0999_slr1363-sacB ATGTTAGACGCCCTCGACCTTTCCC… polyphosphate:AMP phosphotransferase pap
0998_sll1274-sacB ATGCAAAATCTCGGTTTACAGTATC… Cyanobacterial Signature Protein
0997_slr1362-sacB ATGAATGCTTCCGCTCAGTTGACGT… DUF1824 family protein
0996_sll1275-sacB ATGCAAACGTCTCCCCTTCCCCGTC… pyruvate kinase pykF
0995_sll1276-sacB GTGGGGCGCATGGCCAAATATATCG… ABC transporter
0994_sll1277-sacB ATGTACCTGAAAAAACTCTATTTAC… RecF protein recF
0993_slr1357-sacB ATGGCTTACAGTTTAGATTTGAGGC… transposase
0992_slr1356-sacB ATGGTCAGTCAAACTTCTACAGCAA… 30S ribosomal protein S1 rps1
0991_sll1280-sacB GTGAAGTTAGGCCGAATTTTAAAAA… M48 Ste24 endopeptidase-like, integral membrane metallopeptidase
0990_sll1281-sacB ATGTGCTTCCCTCAGGGCACATATT… photosystem II reaction center protein PsbZ ycf9/psbZ
0989_sll1282-sacB ATGACAGTTTATGAAGGGTCGTTTA… riboflavin synthase beta subunit ribH
0988_sll1348-sacB GTGGGCATTGCGCCAGTGTCGGAAA… tRNA epoxyqueuosine(34) reductase QueG queG
0987_sll1349-sacB ATGGCCATTAAAGCTGTATTGTTCG… phosphoglycolate phosphatase, carotenoid oxygenase, 2-phosphoglycolate phosphatase cbbZp
0986_sll1350-sacB ATGCCCAATGAGTTGTCCAATTTAC… hypothetical protein
0985_slr1450-sacB ATGTTCAACTTTTTTGTCAGACTGT… hypothetical protein
0984_slr1449-sacB GTGACAATGAATCCTCTCCCATTAC… cytochrome b
0983_slr1448-sacB ATGGCTGAGGTTGTCTGTTTTGGAG… fructokinase cscK
0982_sll1352-sacB ATGGAAGTAAGCCAGAGCAAGCCTG… DUF2079 domain-containing protein
0981_sll1353-sacB ATGGGCAAATTTCTTGATCTCCTAC… sensory transduction histidine kinase hik15
0980_sll1354-sacB ATGGCCCAATTTCGTTGGCAGTTAA… single-strand-DNA-specific exonuclease; RecJ recJ
0979_ssr2422-sacB ATGACTAACAATGACAATATTCGCT… thylakoid membrane protein
0978_slr1444-sacB ATGGAAACAACACATAGCTTTGGCG… CHAD domain-containing protein
0977_slr1443-sacB ATGACCCCATCCTTGTCCCTGGGCC… protein kinase pknA
0976_slr1442-sacB ATGCTGACTGTCCACCGTGATGCCC… hypothetical protein
0975_sll1355-sacB GTGCAGATAATGCAGTCACCTCTGC… Uma2 family endonuclease
0974_slr1441-sacB GTGGAATCCCAGGTGCGGCCGGCGG… hypothetical protein
0973_sll1356-sacB ATGGAGCACCTTCCCATGGCTTTTA… glycogen/starch/alpha-glucan phosphorylase glgP