Plasmids and Cultures

This database contains entries for 3,572 known and predicted gene coding sequences in Synechocystis sp PCC 6803 based on the Kazusa genome sequence and nomenclature (http://genome.microbedb.jp/cyanobase/GCA_000009725.1). Plasmids for generating marked mutants and mutant strains can be searched for by gene Name/Accession (e.g. 'sll1226' or '1513_sll1226-sacB'),  gene homology (e.g. 'hydrogenase large subunit'), Gene ID (e.g. hoxH), or by a portion of the gene coding sequence Sequence (CDS).

Please note, the library is still being completed. Plasmids and/or marked mutants may not be available. Users can also search for available materials by Plasmids made or Mutant made.

Plasmids, mutants and the unmarking spacer plasmid pUC19K-UL are currently available on request. Regardless of the segregation status of the mutant, open reception of a cyanobacterial mutant strain we recommend 1-2 cycles of restreaking on a selection plate containing kanamycin (100 μg/ml).

Name CDS Gene Homology Gene ID Sort descending
2857_sll0508-sacB ATGCCCACATCTATGTCGGAATGGA… hypothetical protein
2921_sll1344-sacB GTGGACAGATGCAAATTCTCGAATG… hypothetical protein
2731_slr0794-sacB ATGTTAAATACGCTTCTCAATCAAA… CusA/CzcA family heavy metal efflux RND transporter
2605_sll0487-sacB ATGTTGTCCAACTCCGACCAGCACC… class I SAM-dependent methyltransferase
2669_slr0105-sacB ATGTCTGATTCGTCTCTGAAACAAG… ATPase
2543_slr0829-codA GTGCTGCAAGTTTTGCTGGTTATGG… PAS domain S-box protein
2417_sll0382-sacB ATGAAATTTAACCTAGCTCTATTTT… hypothetical protein
2291_slr0439-sacB ATGAGTTATCTGAACCTAGACACAT… WD40 repeat domain-containing protein, IS630 family transposase
2039_slr1949-sacB ATGACCTCCTATTCCTCTGCAACGG… Cyanobacterial Signature Protein (thylakoid membrane protein)
2103_ssl0294-codA ATGTTTCTTGAAGAACTTAAGCCAG… hypothetical protein
1913_sll0274-sacB ATGTTAATGAATTTTTTAGTAATTT… pentapeptide repeat-containing protein
1977_sll0149-sacB ATGGGTATGCCATGGACCTTGGTGC… hypothetical protein
1787_ssr2803-sacB ATGGACAACATTAAAATCGATCAGC… DUF29 domain-containing protein
1661_slr1467-sacB ATGGTATGGAGGCATTTCACCCCCT… precorrin isomerase
1599_slr1957-sacB ATGAGACATTTTTGCGACGCTTGGA… hypothetical protein
1409_sll1979-sacB ATGACTGAGTCCGTAATCTCCCCAG… Cyanobacterial Signature Protein
1347_slr1727-sacB GTGGATACAGCGGTCAACGAATCCC… eukaryotic Na+/H+ exchanger
1095_sll1769-sacB ATGCAAAACCAAGTCCTCCAGGCCT… thylakoid lumen protein
0717_sll1080-sacB ATGTTATTAACAACTAGCGGAGAAA… aliphatic sulfonate ABC transporter substrate-binding protein
0527_sll1940-sacB ATGTTTAGATTATTCAATTCGGGGA… peptidase
0591_slr1033-sacB ATGACAATACTTTTTACCAAAATTC… hypothetical protein
0401_slr0689-sacB ATGGCGACGATCGCCGAGATTAATG… hypothetical protein
0466_sll1004-sacB ATGCTGATCATTGCCATACTCTGCT… glycosyltransferase
0276_slr1301-sacB GTGCTCTATCTGGCTGAAATTAAGA… hypothetical protein
0340_slr1066-sacB ATGGATAAAAAGCAATTAAAAATCT… glycosyltransferase family 1 protein
0214_slr1780-sacB GTGGAAAGTTGGGCATTGACGACCC… Ycf54-like protein
3520_slr6065-sacB ATGCTCACCATTACCCATCTATTAG… metal-dependent hydrolase
3394_slr5071-sacB ATGGATGACAGGGATCTAGTAAAAA… XRE family transcriptional regulator
0060_sll1061-sacB ATGGATCGAATAGAACAAAAAGTTA… hypothetical protein
3458_ssr6003-sacB ATGTCCATCGCTGGAAAGTCCAAAG… no conserved domains
0124_slr0240-sacB ATGAGCTGGATTCCCCCCTACCGTC… hypothetical protein
3268_slr7100-sacB ATGACCATCAACACCGATGCCATTC… hypothetical protein
3332_ssr5009-sacB GTGACAACTGTTACCGATGCAGACC… hypothetical protein
3142_slr0591-sacB ATGGTTGTCAGCACCGTTAATCCCA… ribonucleotide-diphosphate reductase subunit beta
3206_ssl7038-sacB ATGGAAACCCTTAAAACTATCCCTT… putative addiction module antidote protein
3080_slr1667-sacB ATGTTCACTAAATTCAATCAAGTTC… hypothetical protein
2890_ssl1707-sacB ATGAGCCTGGATAATGAATCAATCT… sulfurtransferase TusA family protein
2954_slr1464-sacB ATGAACACAACTTTTCCGGCGGTGT… radical SAM protein
2828_sll0034-sacB ATGGGTAAAAAACCAAAATCTTCCT… D-alanyl-D-alanine carboxypeptidase family protein
2702_slr0304-sacB ATGGTTCAACAATTAGAACGTAGTC… radical SAM/Cys-rich domain protein
2512_sll0553-sacB GTGGGGGCAAAAGTTATTGCAACGG… alpha/beta hydrolase
2386_sll0611-sacB ATGAATCCTGAATTTCATCCCCTCC… hypothetical protein
2260_slr0226-sacB ATGAATCCTTGCAAATTTTTTCGTT… hypothetical protein
2198_slr0353-sacB ATGAAAATAGATTATAAATTAACTC… hypothetical protein
2072_ssr0536-sacB ATGAAAAACTTCCCCGCAATGATTG… hypothetical protein
1882_sll1524-sacB GTGTCAATCAAGTTAGTAGTATTGG… Cof-type HAD-IIB family hydrolase
1504_sll1233-sacB ATGGCAACCTATCGCATTGAACATC… transglutaminase family protein
1378_slr0271-codA ATGCGAATCAACCATAAGCCTCTAT… hypothetical protein
1442_slr1512-sacB ATGGATTTTTTGTCCAATTTCTTGA… sodium-dependent bicarbonate transport family permease
1252_slr1245-sacB ATGGATCGTCTTGCTTGTATGCAGA… transcriptional regulator
1316_slr2004-sacB ATGCACCAAATATCAATGAAGCAAA… hypothetical protein
1126_sll1755-sacB GTGAAGCAATGGAGGAAACTCCCTA… hypothetical protein
1064_sll1305-sacB ATGAATAGCCCCTTTATTCCTATCG… alpha/beta hydrolase
0938_sll1135-sacB ATGAAGCAAATATCCGTGGTTATTG… NAD(P)/FAD-dependent oxidoreductase
0812_slr1208-sacB ATGAAGAGTTTATGGGATGACCAGG… short-chain alcohol dehydrogenase family
0622_sll1293-sacB ATGGTAGAGGACTATTTTTGGATTG… hypothetical protein
0560_sll1834-sacB ATGATGTCTTTTTTAAGTCCCTTGT… membrane protein
0182_slr1101-sacB ATGGATGAAATTTACCCCGCCGTGG… universal stress protein
3488_slr6033-sacB ATGGAACCCTTAAACACCTCGACCT… hypothetical protein
3552_slr6097-sacB ATGTCTAATAATTGGAATATATTAA… type Ii site-specific deoxyribonuclease subunit S
3362_ssl5039-sacB ATGGATCAAAACGAGTGGGTTATCT… hypothetical protein
0028_slr1485-sacB ATGTTTAAATTTGCTCAAATTATTT… hypothetical protein
3426_ssl5103-sacB GTGGAGTTGATGAAGGATGACCGTT… hypothetical protein
0092_slr0723-sacB ATGTATAAAGCCATTGCCGATGCCA… hypothetical protein
3300_slr8026-sacB ATGCAAATTTTTCCAAGGCGAGAGG… MarR family transcriptional regulatory protein
3110_slr0462-sacB ATGCCGTCAAATTCAACGTATTTTA… transposase
3174_sll7006-sacB ATGAGTCGTTTAACCTTAAGATTAC… toxin-antitoxin system HicB family antitoxin
2858_slr0537-sacB ATGGGTCACAAATACGATGTCTATG… adenosine kinase
2732_slr0795-sacB ATGGAGACCACATTGCTCCTTTTGT… hypothetical protein
2796_sll0659-sacB ATGAACTATGCAACTACACCCACAG… hypothetical protein
2606_sll0486-sacB ATGGATATGAATAGGATTGTGTTAA… circadian clock protein KaiB
2670_slr0106-sacB ATGAAACAAGAAATTGGCGCTCTAC… hypothetical protein
2544_sll0834-sacB ATGCAAATAACTAACAAAATTCATT… low affinity sulfate transporter
2418_sll0381-sacB GTGCCTCCAAGGAAAAGTATGCGAT… hypothetical protein
2292_ssl0769-sacB GTGGGGGTTTTAATCGGGATTATGC… transposase
2356_sll0456-codA ATGGGCATGGCTAGTTTAAAACGCA… NAD(P)-dependent oxidoreductase
2230_slr0016-codA ATGTATGACGACGACCAGCGCCGCG… RDD family protein
2104_sll0160-codA ATGTCCTCCACCAGTCCCACTAGTC… cytochrome b/b6 domain-containing protein
1914_sll0273-sacB ATGATTAAGCTCCCTGTGCTCCTCG… Na+/H+ exchanger
1978_sll0148-sacB ATGACCTTTGACCGACGGACATTTT… caspase family protein
1788_ssr2806-sacB ATGCACTCCGTCACCATTTCCCTGG… NUDIX hydrolase
1662_slr1468-sacB ATGGCTTTTTGGCTGATGAAGTCCG… tymocyte protein cThy28kD
1726_slr1530-sacB ATGACACCATCTGCGGCGAGTCATG… segregation/condensation protein A
1536_ssl1520-sacB ATGGCCATGGATAAGGATACGAAAT… hypothetical protein
1600_slr1958-sacB ATGGCTGATTCCATCACCCCAGACT… GUN4 domain-containing protein
1474_slr2115-sacB ATGTTCATGCAGAAAATACAAGCCA… beta-3-deoxy-D-manno-oct-2-ulosonic acid transferase
1158_sll1702-sacB ATGGACGTTACCATTTATCTCCGTT… Ycf51-like protein
1032_slr0885-sacB ATGACAACTACCCTTAAACTACAGC… Uma2 family endonuclease
1096_ssl3383-sacB ATGCGCATTTTAGCTCCCCATCCCC… hypothetical protein
0970_slr1440-sacB ATGACAGGCCCCGTTATTTTTCACC… glyoxalase
0780_slr1900-sacB ATGGGGAGTTATAGCCAATTAGACC… Cyanobacterial Signature Protein
0528_sll1939-sacB ATGACAATATCCCAGGCTCAAAAGG… hypothetical protein
0529_ssr3465-sacB ATGTTTAAACAATTAGGAGTTCTGG… hypothetical protein
0593_slr1034-sacB ATGAACAGTTTTGTTTTAATGGCCA… thylakoid-associated single-stranded DNA-binding protein
0403_sll0638-sacB ATGAAAACTACCACACACAGCAGGG… CHAT domain-containing protein
0277_slr1302-sacB GTGCCCTGGCATTCTGGCCTGGATT… CO2 hydration protein
0151_sll0218-sacB ATGCAACTCCTCTCAACCAATGTGG… hypothetical protein
0215_sll1681-sacB GTGTTTCCCTCAAGTTTGTCGGCGC… hypothetical protein
3521_slr6066-sacB ATGTTTGCCTCCAATCCAAAACCTA… DUF853 family protein
3395_sll5072-sacB ATTGGCGATCGCCTCACCCTCACCG… no conserved domains
0061_sll1060-sacB GTGCCGTCAGCAGTTGGGGAATCAA… UPF0182 family protein
3459_slr6004-sacB ATGGCCGATTATCCCAAACCAGGAC… no conserved domains
3269_slr7101-sacB ATGATGATAATTTGCTGGAGGATGA… hypothetical protein
3333_slr5010-sacB ATGAAAATTAACCGTCAGGGGCAGG… hypothetical protein
3207_ssl7039-sacB ATGATTGAAATCCGGCAAACAGAAA… type II toxin-antitoxin system RelE/ParE family toxin
3017_sll1477-sacB ATGAAGCAATGGCGCTGGCGGATGG… CPBP family intramembrane metalloprotease
3081_slr1668-sacB ATGTTGTCGGACGCCTACTTTTATC… molecular chaperone
2955_ssl2667-sacB ATGGAACTCACCCTAAATAATGTGG… NifU protein
2765_slr0702-sacB ATGTCTTCTAATTCGTCAAGTAAGT… hypothetical protein
2639_sll0597-sacB GTGAACATTGCCCCCGTAGTTGATA… AI-2E family transporter
2703_slr0305-sacB ATGGCCGATTATCTACTAAATGCTC… TVP38/TMEM64 family membrane protein
2513_sll0552-sacB ATGAATCCAAGGCACCGAACGACGA… hypothetical protein
2387_slr0636-sacB ATGGAATGGTGGCGTCGCTGGTATT… adenosylcobinamide-GDP ribazoletransferase
2261_sll0198-sacB ATGGGTCAAACCATCACTCCGCCTC… Uma2 family endonuclease
2325_slr0064-sacB ATGCCAGACACTAGCGCCTTTTCCG… RNA methyltransferase
2199_sll0314-sacB ATGTTGGTTTTCCTCACCCGTTTTA… hypothetical protein
2009_slr1932-codA GTGAAACAGACCGTGTTATTCATTC… alpha/beta hydrolase
2073_sll0295-sacB ATGTCACCCTTTGAATCTATGGAAA… hypothetical protein
1883_slr1644-sacB GTGGCAACTTCTAGGACACAACGGG… tetratricopeptide repeat protein
1631_sll1882-sacB GTGTTGCCTGCCATGATTTGTTTCC… tetratricopeptide repeat protein
1695_slr1272-sacB ATGATTAACCGATCGATGAAATCTT… S-layer homology domain-containing protein
1505_sll1232-sacB ATGCTGCAAATTGCACCCCCATCGA… Uma2 family endonuclease
1379_slr0272-sacB ATGACTACTCCCGTTTTTTGTACTA… zinc ribbon domain-containing protein
1443_slr1513-sacB ATGGCTAAACCAGCGAACAAGCTCG… hypothetical protein
1253_ssr2078-sacB ATGAAAAGTCTGACAGCCTATGAAA… transposase
1317_slr1712-sacB ATGTTTGACAATCTGTGCAAATTTC… Rpn family recombination-promoting nuclease/putative transposase
1191_slr1735-sacB ATGACTTCCCCCACTGCTCCGTTAA… amino acid ABC transporter ATP-binding protein
1065_sll1304-sacB ATGATTTCTTCCCCCAAAATCAAGT… sugar phosphate isomerase/epimerase
0875_sll1717-sacB ATGAGCGTTCTTAAATGGATAAATG… hypothetical protein
0939_slr1232-sacB ATGAAAGGTCACATCAATGCTCCGG… SH3 domain-containing protein
0813_slr1209-sacB ATGAATAGGAGACTGGTAGAGTCTT… DUF433 domain-containing protein
0623_sll1292-sacB GTGAAAACTGTTTTAGTTGTGGAAG… CheY subfamily
0687_slr2018-sacB ATGAAAAATAAAGCGATTGGTAATC… hypothetical protein
0561_slr1915-sacB ATGAGTTTTTTTGATTCAGATATTA… Cyanobacterial Signature Protein
0183_slr1102-sacB ATGCCATCCATGAGTAACGATTCCA… EAL domain-containing protein
0247_sll1660-sacB ATGAATCGATCAAATCCTACTCCTC… bifunctional (p)ppGpp synthetase/guanosine-3'%2C5'-bis(diphosphate) 3'-pyrophosphohydrolase
3489_slr6034-sacB ATGGTTGATATTTGTTGGGAGCAGT… cytidine deaminase
3553_sll6098-sacB ATGGCGATCGCCAGCCGAGCAGGTC… Fic family protein
3363_slr5040-sacB ATGCTCAGAACGGGGTGTGCCTGGC… transposase
0029_slr1488-sacB ATGCTCCTTTCGCCCCAGTCTAATC… ABC transporter
3427_sll5104-sacB TTGACCGAAAATATGATCGTTATCT… arsenate reductase
3237_sll7069-sacB ATGAAAATCATTATTACTGCCAAGG… hypothetical protein
3301_sll8027-sacB ATGAAGGCTTCTCCACGGGTTGTTA… putative toxin-antitoxin system toxin component%2C PIN family
3175_ssl7007-sacB GTGTTAGGAAAACTACTAAGTCTTG… putative toxin-antitoxin system toxin component%2C PIN family
2797_sll0658-sacB ATGATTGTTGTTAGTGACACTTCTG… DUF3368 domain-containing protein
2607_sll0485-sacB ATGACCCAGGAGCCCTACCAAATTC… NarL subfamily
2671_sll0101-sacB ATGCTAGACATAAAACTCTCGTTAC… hypothetical protein
2545_sll0833-sacB ATGGATTGGTGGAAAAAACTGCGGC… OppC in a binding protein-dependent transport system
2167_sll0756-codA GTGGGTGAGCTAGCCGTTTTGCCAA… hypothetical protein
2041_slr1951-codA ATGTCTGATCCCTCGGCAAAACCCC… FHA domain-containing protein
1979_sll0147-sacB ATGCGTGAACTGCTCTACTGTGAAG… hypothetical protein
1789_sll1563-sacB GTGTATATCAGAGTGGATTCGACAG… hypothetical protein
1727_sll1439-sacB ATGGATAATTCAGAGCAATGGTACA… hypothetical protein
1411_slr2095-sacB ATGTCTACACACTGTCACTGTCCTC… transposase
1349_sll1590-sacB GTGCGTATTTGGACCCGTACCCACT… sensory transduction histidine kinase
1159_slr1807-sacB ATGCAGTTAGTTAATCTTCATCCCC… alpha/beta hydrolase
1097_ssl3382-sacB ATGCTGGATAAAACCACGTTGCAAG… hypothetical protein
0907_sll1456-sacB ATGCAAAAATTTTTTAAACAATTAC… FkbM family methyltransferase
0971_sll1359-sacB ATGAAAATAGGAAGAATTACGGCCT… Formate dehydrogenase, c-type cytochrome
0781_slr1901-sacB GTGGTGGAAAATTTGAGCAAGGTTT… ABC transporter
0845_slr1826-sacB ATGCAGTTTTGCTGGATCATAATTG… hypothetical protein
0655_ssr2848-sacB ATGTTTGATTGTACTGTTGATTGTT… hypothetical protein
0846_slr1827-sacB ATGTCGTTTTTTGCTCAACACACCA… alpha/beta fold hydrolase
0656_slr1704-sacB ATGTTTAATAGTTTTTCGTTCCCTA… hypothetical protein
0530_sll1938-sacB ATGGCAACCCTAACCCCGCCAATTA… Uma2 family endonuclease
0594_slr1035-sacB ATGGCGGATTCCCTTCCCAATTTAG… GIY-YIG nuclease family protein
0468_ssl1923-sacB GTGTTGCGTCTGTTAAACCGTCGCT… DUF4351 domain-containing protein
0342_slr1068-sacB ATGAAAACAACTATTAACGACTACA… hypothetical protein
3522_slr6067-sacB ATGAATTGGCGGGCTTTACTGTTGG… hypothetical protein
3396_slr5073-sacB ATGATTGTTGAACGGTGCTATTTTC… hypothetical protein
0062_ssl2069-sacB ATGAAAACTTTATTACTAACCTGGC… hypothetical protein
3460_slr6005-sacB ATGGATGGGCTACTCCATTCCCTTT… ATP-binding protein
3270_slr7102-sacB ATGAAAAAATTACTCAAATCGCTCA… hypothetical protein
3334_ssr5011-sacB ATGAAAAAACAAGTTAAAGTCAAAC… DUF167 domain-containing protein
3144_sll0572-sacB GTGGTGACGGCGTGGCCTATTGTCC… GTPase
3208_ssr7040-sacB ATGGAAGTCCGGCTCAAAAAGTGGG… AbrB/MazE/SpoVT family DNA-binding domain-containing protein
3018_sll1476-sacB ATGGGGAAAGGCAAAGCCGATCCAG… hypothetical protein
3082_ssr2786-sacB ATGCGCCTATTTATTTTTTCCCTTA… hypothetical protein
2892_sll0896-sacB ATGGATCAAACTGAAGCGGCCCAAC… Holliday juction resolvase; RuvC
2766_sll0678-sacB ATGGATTACAGTCATCGTATTGTTA… hypothetical protein
2830_sll0031-sacB GTGACAAGTAGCGAAATTTCACTTA… 4Fe-4S ferredoxin
2640_sll0596-sacB ATGCAATTGCACCTCTCCACCTGGC… creatininase family protein
2704_slr0306-sacB ATGGTTAAAAATCAAGGGGCTTGGC… multifunctional 2'%2C3'-cyclic-nucleotide 2'-phosphodiesterase/5'-nucleotidase/3'-nucleotidase
2514_slr0565-sacB ATGGTTCGTCGTCGTTCGGTGCCTT… membrane protein
2578_sll0086-sacB ATGCGCGTAATTCTGATGACAGGTA… arsenic-transporting ATPase
2388_slr0637-sacB ATGACTGGAAAAGTTGCCGAAAGTG… hypothetical protein
2326_slr0065-sacB ATGACCGATCGCCGTCAGTATGCTC… DUF938 domain-containing protein
2136_slr0384-sacB GTGAAGTTTTGTTGTGAAGGGCGAT… glycosyltransferase family 1 protein
2200_slr0354-sacB ATGCTGTGTTTAAACGACGTTTGCT… ABC transporter
2010_sll1863-sacB ATGAGGATAACCTTTATGTCTAACC… hypothetical protein
1948_sll0361-sacB ATGCCAATGTCCCCATCAGTAAGAT… hypothetical protein
1758_slr1166-sacB ATGCGCCTACTATTTGTTTCTAGTC… glycosyltransferase
1632_slr1975-sacB ATGATTGCCCATCGCCGTCAGGAGT… AGE family epimerase/isomerase
1696_slr1273-sacB ATGTTTTTAACTGCTCTGCGGTCTT… hypothetical protein
1570_slr1336-sacB ATGTCCACCAAAAGTAAGATTTTTC… H+/Ca2+ exchanger
1380_slr0273-sacB ATGCCCAAAAATATGTCACCAATCT… hypothetical protein
1444_sll1415-sacB GTGGAACTGAAACAGGTGATCATTG… NAD(+) kinase
1254_slr1246-sacB GTGAAAGGGCGAAAGCGTCATCTAA… transposase
1128_slr1888-sacB ATGCCCAACTCTGATCGCCAGGAAC… GNAT family N-acetyltransferase
1066_sll1785-sacB ATGCTATTGAAAGTCAAACTTTGGG… hypothetical protein