Plasmids and Cultures

This database contains entries for 3,572 known and predicted gene coding sequences in Synechocystis sp PCC 6803 based on the Kazusa genome sequence and nomenclature (http://genome.microbedb.jp/cyanobase/GCA_000009725.1). Plasmids for generating marked mutants and mutant strains can be searched for by gene Name/Accession (e.g. 'sll1226' or '1513_sll1226-sacB'),  gene homology (e.g. 'hydrogenase large subunit'), Gene ID (e.g. hoxH), or by a portion of the gene coding sequence Sequence (CDS).

Please note, the library is still being completed. Plasmids and/or marked mutants may not be available. Users can also search for available materials by Plasmids made or Mutant made.

Plasmids, mutants and the unmarking spacer plasmid pUC19K-UL are currently available on request. Regardless of the segregation status of the mutant, open reception of a cyanobacterial mutant strain we recommend 1-2 cycles of restreaking on a selection plate containing kanamycin (100 μg/ml).

Name CDS Gene Homology Gene ID Sort descending
1349_sll1590-sacB GTGCGTATTTGGACCCGTACCCACT… sensory transduction histidine kinase
1159_slr1807-sacB ATGCAGTTAGTTAATCTTCATCCCC… alpha/beta hydrolase
1097_ssl3382-sacB ATGCTGGATAAAACCACGTTGCAAG… hypothetical protein
0907_sll1456-sacB ATGCAAAAATTTTTTAAACAATTAC… FkbM family methyltransferase
0971_sll1359-sacB ATGAAAATAGGAAGAATTACGGCCT… Formate dehydrogenase, c-type cytochrome
0781_slr1901-sacB GTGGTGGAAAATTTGAGCAAGGTTT… ABC transporter
0845_slr1826-sacB ATGCAGTTTTGCTGGATCATAATTG… hypothetical protein
0655_ssr2848-sacB ATGTTTGATTGTACTGTTGATTGTT… hypothetical protein
0529_ssr3465-sacB ATGTTTAAACAATTAGGAGTTCTGG… hypothetical protein
0593_slr1034-sacB ATGAACAGTTTTGTTTTAATGGCCA… thylakoid-associated single-stranded DNA-binding protein
0403_sll0638-sacB ATGAAAACTACCACACACAGCAGGG… CHAT domain-containing protein
0277_slr1302-sacB GTGCCCTGGCATTCTGGCCTGGATT… CO2 hydration protein
3521_slr6066-sacB ATGTTTGCCTCCAATCCAAAACCTA… DUF853 family protein
3395_sll5072-sacB ATTGGCGATCGCCTCACCCTCACCG… no conserved domains
3459_slr6004-sacB ATGGCCGATTATCCCAAACCAGGAC… no conserved domains
3269_slr7101-sacB ATGATGATAATTTGCTGGAGGATGA… hypothetical protein
3333_slr5010-sacB ATGAAAATTAACCGTCAGGGGCAGG… hypothetical protein
3207_ssl7039-sacB ATGATTGAAATCCGGCAAACAGAAA… type II toxin-antitoxin system RelE/ParE family toxin
3017_sll1477-sacB ATGAAGCAATGGCGCTGGCGGATGG… CPBP family intramembrane metalloprotease
3081_slr1668-sacB ATGTTGTCGGACGCCTACTTTTATC… molecular chaperone
2955_ssl2667-sacB ATGGAACTCACCCTAAATAATGTGG… NifU protein
2765_slr0702-sacB ATGTCTTCTAATTCGTCAAGTAAGT… hypothetical protein
2639_sll0597-sacB GTGAACATTGCCCCCGTAGTTGATA… AI-2E family transporter
2703_slr0305-sacB ATGGCCGATTATCTACTAAATGCTC… TVP38/TMEM64 family membrane protein
2513_sll0552-sacB ATGAATCCAAGGCACCGAACGACGA… hypothetical protein
2387_slr0636-sacB ATGGAATGGTGGCGTCGCTGGTATT… adenosylcobinamide-GDP ribazoletransferase
2261_sll0198-sacB ATGGGTCAAACCATCACTCCGCCTC… Uma2 family endonuclease
2325_slr0064-sacB ATGCCAGACACTAGCGCCTTTTCCG… RNA methyltransferase
2199_sll0314-sacB ATGTTGGTTTTCCTCACCCGTTTTA… hypothetical protein
2009_slr1932-codA GTGAAACAGACCGTGTTATTCATTC… alpha/beta hydrolase
0011_slr1315-sacB GTGCAACCCAAGCAGAGGGCTGTCC… Uma2 family endonuclease
0137_slr0249-sacB ATGCTGTCAAAAACTATTCATGAAG… DUF1818 family protein
2073_sll0295-sacB ATGTCACCCTTTGAATCTATGGAAA… hypothetical protein
0075_sll1052-sacB ATGGCCATTAACACTTTTACTATTA… sulfite exporter TauE/SafE family protein
0201_slr1110-sacB ATGGGGCCATTGTGGCCTTGTTGGA… DUF1092 family protein
1883_slr1644-sacB GTGGCAACTTCTAGGACACAACGGG… tetratricopeptide repeat protein
1631_sll1882-sacB GTGTTGCCTGCCATGATTTGTTTCC… tetratricopeptide repeat protein
1695_slr1272-sacB ATGATTAACCGATCGATGAAATCTT… S-layer homology domain-containing protein
1505_sll1232-sacB ATGCTGCAAATTGCACCCCCATCGA… Uma2 family endonuclease
1379_slr0272-sacB ATGACTACTCCCGTTTTTTGTACTA… zinc ribbon domain-containing protein
1443_slr1513-sacB ATGGCTAAACCAGCGAACAAGCTCG… hypothetical protein
1253_ssr2078-sacB ATGAAAAGTCTGACAGCCTATGAAA… transposase
1317_slr1712-sacB ATGTTTGACAATCTGTGCAAATTTC… Rpn family recombination-promoting nuclease/putative transposase
1191_slr1735-sacB ATGACTTCCCCCACTGCTCCGTTAA… amino acid ABC transporter ATP-binding protein
1065_sll1304-sacB ATGATTTCTTCCCCCAAAATCAAGT… sugar phosphate isomerase/epimerase
0875_sll1717-sacB ATGAGCGTTCTTAAATGGATAAATG… hypothetical protein
0939_slr1232-sacB ATGAAAGGTCACATCAATGCTCCGG… SH3 domain-containing protein
0813_slr1209-sacB ATGAATAGGAGACTGGTAGAGTCTT… DUF433 domain-containing protein
0623_sll1292-sacB GTGAAAACTGTTTTAGTTGTGGAAG… CheY subfamily
0687_slr2018-sacB ATGAAAAATAAAGCGATTGGTAATC… hypothetical protein
0561_slr1915-sacB ATGAGTTTTTTTGATTCAGATATTA… Cyanobacterial Signature Protein
3489_slr6034-sacB ATGGTTGATATTTGTTGGGAGCAGT… cytidine deaminase
3553_sll6098-sacB ATGGCGATCGCCAGCCGAGCAGGTC… Fic family protein
3363_slr5040-sacB ATGCTCAGAACGGGGTGTGCCTGGC… transposase
3427_sll5104-sacB TTGACCGAAAATATGATCGTTATCT… arsenate reductase
3237_sll7069-sacB ATGAAAATCATTATTACTGCCAAGG… hypothetical protein
3301_sll8027-sacB ATGAAGGCTTCTCCACGGGTTGTTA… putative toxin-antitoxin system toxin component%2C PIN family
3175_ssl7007-sacB GTGTTAGGAAAACTACTAAGTCTTG… putative toxin-antitoxin system toxin component%2C PIN family
2797_sll0658-sacB ATGATTGTTGTTAGTGACACTTCTG… DUF3368 domain-containing protein
2607_sll0485-sacB ATGACCCAGGAGCCCTACCAAATTC… NarL subfamily
2671_sll0101-sacB ATGCTAGACATAAAACTCTCGTTAC… hypothetical protein
2545_sll0833-sacB ATGGATTGGTGGAAAAAACTGCGGC… OppC in a binding protein-dependent transport system
2167_sll0756-codA GTGGGTGAGCTAGCCGTTTTGCCAA… hypothetical protein
2041_slr1951-codA ATGTCTGATCCCTCGGCAAAACCCC… FHA domain-containing protein
0043_sll1396-sacB ATGAACTTTGATCTTTCAAAGCTAA… hypothetical protein
0169_sll1319-sacB ATGCGAATTTTATCTAATGTTAATC… DMT family transporter
0107_sll0700-sacB ATGTTAAGAGAACTAATTAAGCTCT… transposase
1979_sll0147-sacB ATGCGTGAACTGCTCTACTGTGAAG… hypothetical protein
1789_sll1563-sacB GTGTATATCAGAGTGGATTCGACAG… hypothetical protein
1854_slr1623-sacB ATGCTTGTTAAATCCACTACCCGCC… NAD(P)H-quinone oxidoreductase subunit M
1538_sll0816-sacB ATGACTAAATCCCCAAACCTAACCG… oxidoreductase
1412_slr2096-sacB GTGGCATTTTCTTCAGGCAAAAAAA… transposase
1476_slr2117-sacB ATGCTAATCACAAAACAATTATTCT… DUF115 domain-containing protein
1224_sll0847-sacB GTGGGGGTTAACCGGCTAGGGATCT… DUF202 domain-containing protein
1098_sll1768-sacB ATGCCCATGTCCCCCTTGCCCCCTG… OppB in a binding protein-dependent transport system
0908_slr1552-sacB ATGTGGCGTTATCGGTCACCCGAAA… hypothetical protein
0782_slr1902-sacB ATGTCTACACACTGTCACTGTCCTC… transposase
0846_slr1827-sacB ATGTCGTTTTTTGCTCAACACACCA… alpha/beta fold hydrolase
0656_slr1704-sacB ATGTTTAATAGTTTTTCGTTCCCTA… hypothetical protein
0530_sll1938-sacB ATGGCAACCCTAACCCCGCCAATTA… Uma2 family endonuclease
0594_slr1035-sacB ATGGCGGATTCCCTTCCCAATTTAG… GIY-YIG nuclease family protein
0468_ssl1923-sacB GTGTTGCGTCTGTTAAACCGTCGCT… DUF4351 domain-containing protein
0342_slr1068-sacB ATGAAAACAACTATTAACGACTACA… hypothetical protein
3522_slr6067-sacB ATGAATTGGCGGGCTTTACTGTTGG… hypothetical protein
3396_slr5073-sacB ATGATTGTTGAACGGTGCTATTTTC… hypothetical protein
3460_slr6005-sacB ATGGATGGGCTACTCCATTCCCTTT… ATP-binding protein
3270_slr7102-sacB ATGAAAAAATTACTCAAATCGCTCA… hypothetical protein
3334_ssr5011-sacB ATGAAAAAACAAGTTAAAGTCAAAC… DUF167 domain-containing protein
3144_sll0572-sacB GTGGTGACGGCGTGGCCTATTGTCC… GTPase
3208_ssr7040-sacB ATGGAAGTCCGGCTCAAAAAGTGGG… AbrB/MazE/SpoVT family DNA-binding domain-containing protein
3018_sll1476-sacB ATGGGGAAAGGCAAAGCCGATCCAG… hypothetical protein
3082_ssr2786-sacB ATGCGCCTATTTATTTTTTCCCTTA… hypothetical protein
2892_sll0896-sacB ATGGATCAAACTGAAGCGGCCCAAC… Holliday juction resolvase; RuvC
2766_sll0678-sacB ATGGATTACAGTCATCGTATTGTTA… hypothetical protein
2830_sll0031-sacB GTGACAAGTAGCGAAATTTCACTTA… 4Fe-4S ferredoxin
2640_sll0596-sacB ATGCAATTGCACCTCTCCACCTGGC… creatininase family protein
2704_slr0306-sacB ATGGTTAAAAATCAAGGGGCTTGGC… multifunctional 2'%2C3'-cyclic-nucleotide 2'-phosphodiesterase/5'-nucleotidase/3'-nucleotidase
2514_slr0565-sacB ATGGTTCGTCGTCGTTCGGTGCCTT… membrane protein
2578_sll0086-sacB ATGCGCGTAATTCTGATGACAGGTA… arsenic-transporting ATPase
2388_slr0637-sacB ATGACTGGAAAAGTTGCCGAAAGTG… hypothetical protein
2326_slr0065-sacB ATGACCGATCGCCGTCAGTATGCTC… DUF938 domain-containing protein
2136_slr0384-sacB GTGAAGTTTTGTTGTGAAGGGCGAT… glycosyltransferase family 1 protein
2200_slr0354-sacB ATGCTGTGTTTAAACGACGTTTGCT… ABC transporter
2010_sll1863-sacB ATGAGGATAACCTTTATGTCTAACC… hypothetical protein
0138_slr0250-sacB ATGGTTCGTTTGCTCATGGTATTCC… hypothetical protein
0202_slr1772-sacB ATGGTCGGGGCGATCGCCCGATGGG… linear amide C-N hydrolase
1948_sll0361-sacB ATGCCAATGTCCCCATCAGTAAGAT… hypothetical protein
1758_slr1166-sacB ATGCGCCTACTATTTGTTTCTAGTC… glycosyltransferase
1632_slr1975-sacB ATGATTGCCCATCGCCGTCAGGAGT… AGE family epimerase/isomerase
1696_slr1273-sacB ATGTTTTTAACTGCTCTGCGGTCTT… hypothetical protein
1570_slr1336-sacB ATGTCCACCAAAAGTAAGATTTTTC… H+/Ca2+ exchanger
1380_slr0273-sacB ATGCCCAAAAATATGTCACCAATCT… hypothetical protein
1444_sll1415-sacB GTGGAACTGAAACAGGTGATCATTG… NAD(+) kinase
1254_slr1246-sacB GTGAAAGGGCGAAAGCGTCATCTAA… transposase
1128_slr1888-sacB ATGCCCAACTCTGATCGCCAGGAAC… GNAT family N-acetyltransferase
1066_sll1785-sacB ATGCTATTGAAAGTCAAACTTTGGG… hypothetical protein
0876_sll1716-sacB ATGATAATCCGGGAATTTTACAGCA… transposase
0940_ssr2047-sacB ATGTCCATAATGTTGCAAGACCCCC… hypothetical protein
0814_slr1210-sacB ATGATTAAATTCTATAGCAACGAAA… hypothetical protein
0688_slr2019-sacB GTGACTAAACCCATTGCCCCCCTCC… ABC transporter
0498_sll1752-sacB ATGACCAATTCTCCCCTGGCGATCG… 1-acyl-sn-glycerol-3-phosphate acyltransferase
0562_slr1916-sacB ATGCCCACCCTGGATCTTTTGGGTT… alpha/beta hydrolase
0436_ssl2920-sacB ATGCTAAAAACATCAGAATTTCAAA… hypothetical protein
3490_ssl6035-sacB ATGAGCAAATTTAAAGGGATTTTGG… hypothetical protein
3554_ssr6099-sacB ATGGATTTAGATGCACGGTTTGAGT… hypothetical protein
3364_sll5041-sacB GTGGATACCTTACTAGACGAGTTGC… transposase
3428_slr5105-sacB ATGATTATTACCGTTGCCAGTTTTA… plasmid partitioning protein
3238_sll7070-sacB ATGGAAAACCCTAATCAATACCAAA… hypothetical protein
3302_ssl8028-sacB ATGCTGGCTAAGTTGACATCTAAGA… AbrB/MazE/SpoVT family DNA-binding domain-containing protein
3176_slr7008-sacB ATGATATCAAATTTTGGACATATTG… transposase
2986_slr1557-sacB ATGGTTACTGCCATGAGTCCTGCTA… Cyanobacterial Signature Protein (helix-turn-helix domain-containing protein)
2860_sll0506-sacB ATGACTATTAAACCTGTCATCTTAG… isoprenyl transferase
2798_ssl1255-sacB ATGGTTGATGGTCGTCCAATGCAAA… UPF0175 family protein
2608_sll0484-sacB ATGGCAATGCTTCTTTCCTCCCCCT… ABC transporter
2420_ssl0750-sacB GTGATGTTGTTTGCGTTTTTCCAGC… hypothetical protein
2168_sll0755-codA ATGACAGAGGTATTAAGGGTAGGAC… thiol-specific antioxidant protein
2042_slr0989-codA ATGGGCGGCCGTAAATGGCAGAGTA… YebC/PmpR family DNA-binding transcriptional regulator
0170_sll1318-sacB ATGCCCTCGTCACCAGTTCAATTTA… hypothetical protein
2106_sll0157-sacB ATGGAACTCACCTGGTACGACAGCA… MBL fold metallo-hydrolase
0108_sll0699-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
1980_sll0146-sacB ATGAACTTTGGCTATCTGATTTTTT… high-affinity branched-chain amino acid transport protein; BraE
1790_sll1562-sacB ATGGCTTCCGTACCATTTACAGACA… hypothetical protein
1665_slr1470-sacB ATGGGCATTCGAGAAACCACTTATT… PH domain-containing protein
1729_sll1437-sacB ATGTTAAGAGAACTAATTAAGCTCT… transposase
1539_sll0815-sacB ATGGCACGACAAGCTCGCTATCAAA… slipin family protein
1477_slr2118-sacB GTGGACATGAAATATCCTAGGATTT… glycosyltransferase family 1 protein
1287_slr2059-sacB ATGAAGAAGCGTGTGACCCTGACTT… ferredoxin
1161_slr1809-sacB ATGGCATTGGTCCACAGCGGAGTAA… hypothetical protein
1035_sll0867-sacB GTGCCCAGGGGGCTTTGGGTTACCC… aldo/keto reductase
0909_sll1455-sacB ATGTTTTTTCAATTTGAAGCTGATT… hypothetical protein
0783_slr1903-sacB GTGGCATTTTCTCCAGGCAAAAAAA… transposase
0847_sll1739-sacB ATGAAATTTAACACGGAATGCTTAC… hypothetical protein
0657_sll1575-sacB GTGATTAAATACCGTCCCCTCAAAG… serine/threonine protein kinase
0721_slr1142-sacB ATGCAACAAGCGGCCATCCCAGCCA… GAF domain-containing protein
0595_sll0986-sacB ATGATAAGGCATATGAGCGTGTTAC… transposase
0469_ssl1922-sacB ATGGCGAACGCTCTATGGTTATTTT… transposase
0343_slr1069-sacB GTGGGCAATGAACAAAAAACAGTAT… FkbM family methyltransferase
3523_slr6068-sacB ATGGAAGACCCCCAGGGACAATCTA… hypothetical protein
3397_ssr5074-sacB ATGTTTAAATTTATAGGCATTGTAT… hypothetical protein
3461_slr6006-sacB ATGCTCACCATTACCCATCTATTAG… metal-dependent hydrolase
3271_sll7103-sacB ATGCAACTAAAAAATGATTATCATC… exodeoxyribonuclease V alpha chain
3335_slr5012-sacB ATGAAAGTTCAGCTTGGTCTTGATA… DUF4007 family protein
3145_slr0592-sacB ATGGCGATCGCCACAATCTTTGCCC… hypothetical protein
3019_slr1583-sacB GTGTTTACTCGACTTGCCCAGCAAC… DUF1815 family protein
3083_sll1542-sacB ATGAAAACAGACAAATGGTTTTACG… DUF2887 domain-containing protein
2957_slr0651-sacB ATGCTTGCCCTAATTGACACTGTTA… DUF4346 domain-containing protein
2767_sll0677-sacB ATGATAATTCGAGAATTTTACAGCA… transposase
2831_slr0038-sacB ATGTCTAGCACTGCCATTAGCCAGC… hypothetical protein
2641_sll0595-sacB ATGGTCTGGGCAAACCTTGGGCACT… hypothetical protein
2705_sll0286-sacB ATGGTTTTTTGGAAACGCTTTTTTA… GNAT family N-acetyltransferase
2579_sll0085-sacB ATGAACTCTGACCATTCTCGGGATC… hypothetical protein
2453_ssl0353-sacB ATGAATTATGCGGCGATCGTCGGCC… YggT family protein
2011_sll1862-sacB ATGGGGTCATTGCAAGGAAATTACT… hypothetical protein
2075_slr0337-codA ATGGCCCACCCGTTGTATGTCGCTT… hypothetical protein
0077_sll1049-sacB GTGTCTATGGTTGTCGATTCTGTGC… transglutaminase family protein
0203_sll1686-sacB ATGTTAGTCACCGACTCTCTTTTGC… TM0106 family RecB-like putative nuclease
1949_sll0360-sacB ATGGAAAATTTGATGGAGTTTTGGC… CPBP family intramembrane metalloprotease
1759_sll1092-sacB ATGAATTCTGTTTTGATAGACACCC… type II toxin-antitoxin system VapC family toxin
1823_slr0941-sacB ATGGCTAATTGGTTAGAACATAGCG… membrane protein
1633_sll1880-sacB ATGATCTCCTCTGCCGCTACTTTTC… YjbQ family protein
1571_sll1258-sacB ATGATTAAGAATGATATTTGGATCC… dCTP deaminase
1381_sll0243-sacB ATGATTGATTTTATTAAAAAAAAAG… zinc ribbon domain-containing protein
1255_sll1157-sacB GTGGCATTTTCTTCAGGCCAAAAAA… transposase
1003_sll1273-sacB ATGAAATTATCCGATAAAGGTCTTA… hypothetical protein
1067_sll1784-sacB ATGAAAACTTTACGTTTATCCCCAT… hypothetical protein
0877_sll1715-sacB GTGAACCTGATTGGTCAGAGAAAAT… PIN domain-containing protein
0689_sll1921-sacB ATGGCTCAATCCCCCTGTTCCCGAT… hypothetical protein
0499_ssr3122-sacB ATGATTAGTCTTGATCAAGTCAAAC… BolA family transcriptional regulator
0563_slr1917-sacB ATGGTCTCCCTGGAATCTTCCCCCC… alpha/beta fold hydrolase
0437_sll1505-sacB ATGCAACGTAATCAAGAATCCCTTA… DUF86 domain-containing protein
0311_sll0925-sacB ATGGTTGCGCTCTCCTCCAATGGAT… Uma2 family endonuclease
3555_slr6100-sacB ATGCACATCATCTCGAAAACTGCCC… type II toxin-antitoxin system HigB family toxin
3365_sll5042-sacB ATGAAATGTGCCACCAGTACCCTCC… sulfotransferase
3429_ssr5106-sacB ATGAGCAAATTTAAAGGGATTTTGG… hypothetical protein
3303_slr8029-sacB ATGGCGATCGTCGGTTATGCACGGG… resolvase
3113_slr1177-sacB ATGACCGCTCCCGTTAAAGCAGTAA… TIGR03943 family protein
3177_sll7009-sacB ATGAAATTTCAATACAATTCCTTAA… WYL domain-containing protein
2987_sll1496-sacB ATGCGAGCTGTGTTGATGGCAGGGG… mannose-1-phosphate guanyltransferase
2861_sll0505-sacB ATGTCGGGCTTTCCCCCGGATCTTA… TIGR00159 family protein
2925_slr1424-sacB ATGATTATTTCCCCCGCTACCCGTC… UDP-N-acetylenolpyruvoylglucosamine reductase