Plasmids and Cultures

This database contains entries for 3,572 known and predicted gene coding sequences in Synechocystis sp PCC 6803 based on the Kazusa genome sequence and nomenclature (http://genome.microbedb.jp/cyanobase/GCA_000009725.1). Plasmids for generating marked mutants and mutant strains can be searched for by gene Name/Accession (e.g. 'sll1226' or '1513_sll1226-sacB'),  gene homology (e.g. 'hydrogenase large subunit'), Gene ID (e.g. hoxH), or by a portion of the gene coding sequence Sequence (CDS).

Please note, the library is still being completed. Plasmids and/or marked mutants may not be available. Users can also search for available materials by Plasmids made or Mutant made.

Plasmids, mutants and the unmarking spacer plasmid pUC19K-UL are currently available on request. Regardless of the segregation status of the mutant, open reception of a cyanobacterial mutant strain we recommend 1-2 cycles of restreaking on a selection plate containing kanamycin (100 μg/ml).

Name CDS Gene Homology Sort ascending Gene ID
3205_slr7037-sacB ATGAAAGTTAGACCCCAGCACTGGC… DUF3854 domain-containing protein
0887_slr1541-sacB ATGGCCACCACTGCCGATGAAGTTT… DUF3782 domain-containing protein
2384_slr0634-sacB ATGGCAACTACCGCTGATGAAGTTT… DUF3782 domain-containing protein
2019_sll1853-sacB ATGGCGATGGAAGTGCAACTATTGT… DUF3750 domain-containing protein
2190_sll0319-sacB ATGAACTGGAAATTTTTCCCACACC… DUF3747 domain-containing protein
3005_ssl2874-sacB ATGGAAATTCAACTCATCAACATTG… DUF370 domain-containing protein
1634_sll1879-sacB GTGAGTGAATCTCCCTTAACCATTG… DUF3685 domain-containing protein
0252_sll1656-sacB ATGAACCGACGCAACACCGAATTGG… DUF3611 family protein
2872_sll0497-sacB ATGACCATGGCTAACTGGGAAAACT… DUF3598 family protein
2392_sll0609-sacB GTGGATTTATCGTCAATCAGCCCAG… DUF3593 domain-containing protein
0796_slr1195-sacB ATGGAAGTGCAATTTCGGGAAGTAA… DUF3531 family protein
1326_sll1608-sacB ATGACTTTCTCCTTCCCCATGGCCC… DUF3488 domain-containing protein
0303_sll0933-sacB ATGGCTGACCCCACCAATCGAGACC… DUF3464 family protein
2936_slr1431-sacB ATGATCCCACTGCTTTCCCCCATGA… DUF3370 domain-containing protein
1279_slr1263-sacB ATGCTTTCCCTGCTCACACCTCTAG… DUF3370 domain-containing protein
2797_sll0658-sacB ATGATTGTTGTTAGTGACACTTCTG… DUF3368 domain-containing protein
3357_sll5034-sacB ATGCAAACTTTACCACAACGGATTT… DUF3365 domain-containing protein
3009_slr1579-sacB GTGAAACCCCGTTCTTTTTTCGTTC… DUF3352 domain-containing protein
1715_slr1287-sacB GTGGGGGCGGCCCTTGGTGGTTACG… DUF3326 domain-containing protein
2192_sll0318-sacB ATGAACCGCCAGGGAACCTATCAAG… DUF3318 domain-containing protein
3069_slr1660-sacB ATGGCCCGCAGACCCCCACCCCGTT… DUF3172 domain-containing protein
1337_slr1724-sacB ATGTTATTTGCCCATGAGGCTTCCA… DUF3153 domain-containing protein
0736_ssl3451-sacB ATGGCTGATTTGTTTGTCGGTGCCC… DUF3148 domain-containing protein
1120_ssr3188-sacB ATGAGCCTCCCCGCACCGGAAACTC… DUF3143 domain-containing protein
3356_sll5033-sacB ATGAAAAGCATCTTAAGTTTTATCA… DUF3122 domain-containing protein
0098_slr0730-sacB ATGGCCAGCACCCCCATCCAGAGCG… DUF3119 family protein
1432_sll1424-sacB ATGACCAGTGCCTATATTCTGGTTC… DUF3084 domain-containing protein
2289_slr0438-codA ATGAGCGAAGATTCCCCCAAACCAG… DUF3082 domain-containing protein
3154_slr0598-sacB ATGACCGGTAAACAGTTACACCAGT… DUF3067 family protein
3494_slr6039-sacB GTGGGTAATCAATTCTGGATATATG… DUF305 domain-containing protein
2741_sll0788-sacB GTGGGTAATCAATTCTGGATATATG… DUF305 domain-containing protein
1951_slr0397-sacB ATGGTTCTCACCCAGTTCGCCTCCA… DUF3038 domain-containing protein
3360_slr5037-sacB ATGTATTACTTTAGTAAAAAATTGC… DUF302 domain-containing protein
1546_slr0815-sacB GTGTTTTTTTGTTGCCCATTGTTCC… DUF3007 family protein
2792_ssl1263-sacB ATGGGAGGATTGACCGTGAATCTAG… DUF2997 domain-containing protein
1915_sll0272-codA GTGGCGCTCATTCCCTTTTACGTAT… DUF2996 domain-containing protein ndhV
0460_slr1053-sacB ATGGAATGGTTCGCCATTGCCCTGT… DUF2993 domain-containing protein
3138_slr0590-sacB ATGGGCTTAGCCGTTGACAGTAATT… DUF2993 domain-containing protein
2613_sll0482-sacB ATGCCAATGGCGCTTTGGGGCATCG… DUF2974 domain-containing protein
0741_ssl3446-sacB ATGGTAGTGTCCCAAAATTTTATTC… DUF2949 domain-containing protein
0400_ssr1155-sacB ATGAGTCAAACTAACTACTATCAGA… DUF2949 domain-containing protein
2411_slr0416-sacB ATGGAAGAATTGTTAGAACTGAAAA… DUF29 family protein
1187_sll1630-sacB ATGGAAGAATTATTGGAATTAAAAC… DUF29 family protein
1165_slr1811-sacB ATGATTGAGGAAGGTTGCATGGTTG… DUF29 domain-containing protein
2803_sll0743-sacB ATGACTTTAAAAATCAATGCCAATC… DUF29 domain-containing protein
1166_slr1812-sacB ATGGTTGCTGAACTCCGCAAAACAA… DUF29 domain-containing protein
2804_sll0742-sacB ATGGTCACTCAGATGAATACCAAAA… DUF29 domain-containing protein
1167_slr1813-sacB ATGGTTGCCGAACTCCGCAAAACTA… DUF29 domain-containing protein
1168_slr1814-sacB ATGGTTGCTGAACTCCACAAAACCA… DUF29 domain-containing protein
0506_sll1749-sacB ATGGAATCTCAACTGCAATTCCCCA… DUF29 domain-containing protein
0320_slr0980-sacB ATGGAGCAACTTTACGAAAGAGATT… DUF29 domain-containing protein
1487_slr2128-sacB ATGATTTCTAACCCTTCTGTCCCAA… DUF29 domain-containing protein
1176_sll1692-sacB ATGGATAGTCTTCTTTATACTGAGG… DUF29 domain-containing protein
0327_slr1611-sacB ATGGTTGAAGCAACAGCCCTCACCT… DUF29 domain-containing protein
1935_slr0291-sacB ATGAAAAACCAACTTTACGAAACGG… DUF29 domain-containing protein
0806_slr1203-sacB ATGACAACACTGTATGAAACGGACT… DUF29 domain-containing protein
1563_sll0803-sacB ATGAATACCCCCTCTTCGACCCAAC… DUF29 domain-containing protein
1564_sll0802-sacB ATGGGGCAAAAAACTACAACTTTGT… DUF29 domain-containing protein
1787_ssr2803-sacB ATGGACAACATTAAAATCGATCAGC… DUF29 domain-containing protein
1277_slr1261-sacB ATGGCTAGCTCAACCCAAACCAATG… DUF2892 domain-containing protein
3083_sll1542-sacB ATGAAAACAGACAAATGGTTTTACG… DUF2887 domain-containing protein
0235_ssr2998-sacB ATGACGATTGAAATAGGTCAAAAAG… DUF2862 domain-containing protein
1690_slr1266-sacB ATGTCGAAGAATTTTAACTTGCTAT… DUF2808 domain-containing protein
2635_sll0470-sacB ATGTCTATGCCATCTATGCCTAAAT… DUF2808 domain-containing protein
2203_slr0356-sacB ATGACTAGACCAATTTCCCTGGGCT… DUF2808 domain-containing protein
2517_slr0569-sacB ATGGAGTCGGCCACCATGTCTTTTC… DUF2779 domain-containing protein
2523_sll0543-sacB ATGTTTAGTTTGAAAAATTATTCCC… DUF2752 domain-containing protein
3192_slr7024-sacB ATGACAATTTATGCCCTAGAACATC… DUF262 domain-containing protein
3323_sll5132-sacB DUF262 domain-containing protein
1375_slr0270-sacB ATGATCAATCCCCAACCAGACGAAA… DUF2605 domain-containing protein
3506_slr6051-sacB ATGAAAAGAGATATGGAATTAATCA… DUF2513 domain-containing protein
1291_ssl3692-sacB ATGAACTCTCAGGTTAAAACTCCTT… DUF2442 domain-containing protein
0800_ssr2009-sacB ATGCTACCACCTCTAAAAAATCCAA… DUF2442 domain-containing protein
0330_slr1614-sacB ATGTTTTTACATGTTGTTTCTGCTT… DUF2442 domain-containing protein
1944_sll0364-sacB ATGTTACCGCCGACAATGGAAAGCC… DUF2358 domain-containing protein
3527_slr6072-sacB ATGGAAGGGGATGTTGTACAGCTAA… DUF2357 domain-containing protein
3468_slr6013-sacB ATGGAAGGGGATGTTGTACAGCTAA… DUF2357 domain-containing protein
1770_slr1173-sacB ATGGATAAAGCCATTCGGAAAATTT… DUF2330 domain-containing protein
0238_ssr3000-sacB ATGACCGATATTCAAAAACAGTTAC… DUF2288 domain-containing protein
0356_ssr1768-sacB ATGAAGATTAAGTACTTTACTGATA… DUF2283 domain-containing protein
3287_ssr8013-sacB ATGACAGCGCAAGAAAAACTCTACC… DUF2281 domain-containing protein
1760_ssl2138-sacB ATGACTACTGAAGCTGCCCTATTAA… DUF2281 domain-containing protein
3410_slr5087-sacB ATGCCAGTACCTGCAGAATATCAGC… DUF2267 domain-containing protein
1861_slr1628-sacB ATGGCTACTCTCCAGGATTCCCGGG… DUF2237 family protein
1681_sll1372-sacB ATGACTTTTTCTGCTGACCGATCGC… DUF2232 domain-containing protein
3010_sll1486-sacB ATGCATCCAAATCTTCCTTGGCTCC… DUF2231 domain-containing protein
3011_sll1485-sacB ATGTTCACCCTCAATGACCAAAATC… DUF2231 domain-containing protein
3124_slr1186-sacB ATGTGGATTAGTGCCACCGTTGCGT… DUF2214 family protein
0205_slr1773-sacB ATGTTGAAAAATATTTTTGCCCTGA… DUF2092 domain-containing protein
0982_sll1352-sacB ATGGAAGTAAGCCAGAGCAAGCCTG… DUF2079 domain-containing protein
1747_sll1095-sacB ATGGCTGAACAGCATTTAATTATTT… DUF2064 domain-containing protein
2064_sll0298-codA ATGGCGTCGATTAGTGGGGCAATGG… DUF2062 domain-containing protein
1224_sll0847-sacB GTGGGGGTTAACCGGCTAGGGATCT… DUF202 domain-containing protein
1132_sll2013-sacB ATGCGAGTTACCTTTTCCGCCACCG… DUF1997 domain-containing protein
0809_slr1206-sacB ATGGAAATGTTTGCCCCCGGTCAAG… DUF1997 domain-containing protein
0648_slr1702-sacB ATGTCCCTCCCCGTTCCCTCCACCA… DUF1995 family protein
3404_sll5081-sacB ATGAATGAGAAATTTTTCAAATTAG… DUF1963 domain-containing protein
0945_slr1236-sacB ATGACCCCATTGACTTTTCGTAACT… DUF192 domain-containing protein
0823_slr2070-sacB GTGCTAAATGTCCGGAGACTCCACC… DUF1868 domain-containing protein
1675_sll1378-sacB ATGGCATTAACCATGCCACGATTTT… DUF1838 domain-containing protein
2050_sll0944-codA GTGCAATGCCTCGGAAAAATTTTCT… DUF1830 domain-containing protein pirC
0997_slr1362-sacB ATGAATGCTTCCGCTCAGTTGACGT… DUF1824 family protein
0775_slr1896-sacB ATGGCTGAAGTTATCCCCAACAATC… DUF1823 family protein
2710_sll0281-sacB ATGGTTGCCATCGATAATAATTTGA… DUF1822 family protein
3210_ssl7042-sacB ATGGGCACTGCCACTAGATATACGG… DUF1819 family protein
0137_slr0249-sacB ATGCTGTCAAAAACTATTCATGAAG… DUF1818 family protein
0178_slr1097-sacB ATGGTCACCATCACCGTTACCCCAG… DUF1817 domain-containing protein
1845_slr0957-sacB ATGACAGCAAACAAATCCCATTACC… DUF1816 domain-containing protein
3019_slr1583-sacB GTGTTTACTCGACTTGCCCAGCAAC… DUF1815 family protein
3199_sll7031-sacB ATGACCCAGATCACCAAGTCCAAAG… DUF1778 domain-containing protein
1547_slr0816-sacB ATGGTTATACAGCCCATTTACTTAC… DUF177 domain-containing protein
3334_ssr5011-sacB ATGAAAAAACAAGTTAAAGTCAAAC… DUF167 domain-containing protein
0034_slr1493-sacB GTGGACCGATCGCCGCTAATGCCAT… DUF1636 domain-containing protein
0296_sll0939-sacB ATGGAAATTTTGGATCATTATCTGG… DUF1622 domain-containing protein
1958_slr0404-sacB ATGCTTAAGATGCTCAAGAATTTAC… DUF1517 domain-containing protein
1200_sll1620-sacB ATGGGTGCGCTATTGGCTGTGTTGC… DUF1499 domain-containing protein
0579_sll0994-sacB GTGCCCTCAACCAACTTCTTTGTCC… DUF1449 family protein
2406_sll0397-sacB ATGGAACTAATCATTTCCTGGCTAC… DUF1361 domain-containing protein
0642_slr1699-sacB ATGGAATGGCGTGAAATTTCTGGCA… DUF1350 domain-containing protein
2752_sll0781-sacB ATGACAACACCTTTAGTTCCTCCCT… DUF1348 family protein
1966_slr0142-sacB ATGAAACTATTATCAAGTGGGCAGT… DUF1275 domain-containing protein
3129_sll1106-sacB ATGAGTGACTTAATTGTTATCGGCT… DUF1269 domain-containing protein
2791_sll0661-sacB ATGTCTCACTTTAGCAATATCAAAA… DUF1257 domain-containing protein ycf35
1226_sll0846-sacB ATGAAATTTTCCCTCGAGTCTCTCT… DUF1232 domain-containing protein
2657_sll0584-sacB ATGAAGCCGATGCGGGAATCTTCCC… DUF1230 family protein ycf36
2211_sll0022-sacB ATGGAACCAAATCATTTCCCCGGTA… DUF1190 domain-containing protein
1484_slr2125-sacB ATGACGAAAAACACAACCGTAGAGC… DUF115 domain-containing protein
1476_slr2117-sacB ATGCTAATCACAAAACAATTATTCT… DUF115 domain-containing protein
0201_slr1110-sacB ATGGGGCCATTGTGGCCTTGTTGGA… DUF1092 family protein
1148_sll2002-sacB ATGGGCGTTACCTGGGAATTGGATT… DUF1092 family protein
1764_slr1169-sacB ATGCAAGGTTTACTGCTCATTTTTT… DUF1049 domain-containing protein
0555_sll1837-sacB ATGGTTAATAAAGGGTTATGGTCTG… DUF1036 domain-containing protein
2131_slr0379-sacB GTGGCGATCGCCAAGGGAAATCAAG… dTMP kinase
2550_slr0836-sacB ATGGCAAAAACTCCCATTTTGGTCA… dTDP-glucose 46-dehydratase rfbB
1533_slr0809-sacB ATGCCCAGCCATTTGCCAAATGCTA… dTDP-glucose 4-6-dehydratase rfbB
0325_slr0985-sacB ATGACTACTATGGGAAGATTTTTGA… dTDP-6-deoxy-L-mannose-dehydrogenase rfbC
0045_sll1395-sacB GTGGGACGAGAATTAGCCATTCCTT… dTDP-6-deoxy-L-mannose-dehydrogenase rfbD
2014_slr1933-sacB GTGAACGTGATTCCCACAACTATCG… dTDP-4-dehydrorhamnose 35-epimerase rfbC
2714_slr0313-sacB ATGAGCAAAGATCGCAACCACGGTT… DsbA family protein
1331_slr1719-sacB ATGGACACCTTTGACGCTATTTACC… DrgA gene product drgA
1852_sll1540-sacB ATGGTCTATTTTCCCCTGCCATCGC… dolichyl-phosphate-mannose synthase dpm1
2033_slr1943-codA ATGGTTACAAATTCACCAAGCCGGT… dolichol phosphate mannose synthase dpm1
3086_slr0449-sacB ATGACTGTTGCTCCGGATCTGGCCC… DNR protein
0545_sll1932-sacB GTGTTAACGAGTATTAACCGCTCTG… DnaK protein dnaK
2091_sll0170-sacB ATGGGAAAAGTTGTTGGGATTGACC… DnaK protein dnaK
2322_sll0058-sacB ATGGGCAAAGTCATTGGCATTGATT… DnaK protein dnaK
0544_sll1933-sacB ATGGAACAAGTGCGGAATTATTATC… DnaJ protein dnaJ
2598_slr0093-sacB ATGGCATCAACAGATTTCAAAGACT… DnaJ protein dnaJ
0240_sll1666-sacB GTGTCTTCTAATCCCCATTCCACCC… DnaJ protein dnaJ
2891_sll0897-sacB ATGCCTGGGGATTATTACCAAACGC… DnaJ protein dnaJ
1838_sll0909-sacB ATGGACGACCTCACCATCTACACAA… DnaJ family molecular chaperone
0798_slr1197-sacB ATGGCGAATTCTGAACAGGCCTATT… DNA-protecting protein DprA dprA
1868_ssl2982-sacB ATGACCAAGCGTAGTAATTTGGATT… DNA-directed RNA polymerase subunit omega
0889_slr1543-sacB GTGAATTTTGACCGCATTTTTGCTT… DNA-damage-inducible protein: MATE family efflux transporter
2084_sll0176-codA ATGACGGCTATGTGTGGTTTTGGAT… DNA-binding transcriptional regulator, FrmR family
3222_slr7054-sacB GTGTATATACATTTGAAGAGGGGGC… DNA-binding protein
3172_ssl7004-sacB ATGGCTAATTTAATTGTTCGCAATA… DNA-binding protein
2267_slr0231-codA ATGTTATTCCAAAGATTTTTGGACT… DNA-3-methyladenine glycosylase 2 family protein
1286_slr2058-sacB ATGTCCAAACTCGTTATCGTTGAAT… DNA topoisomerase I topA
0772_slr1894-sacB ATGGCTACGATTAATATCGGCATTC… DNA starvation/stationary phase protection protein mrgA
1892_sll1520-sacB ATGCTACTATCCCTGCGGATCAATA… DNA repair protein; RecN recN
2102_slr0181-sacB GTGAAAGGTATGGCCTTTGGGGAAT… DNA repair protein RecO RecO
1912_slr0448-sacB ATGGCTAAAGCCCGGACAAAGTTTG… DNA repair protein RadA sms/radA
2239_slr0020-codA GTGCAATGTAGCTTGGTTGAGGTGT… DNA recombinase recG
1651_sll1868-sacB ATGGATAACCTCCGTCTGCATCCAG… DNA primase dnaG
3340_slr5017-sacB ATGCTCTCAGTAACTCACCTCAAAA… DNA polymerase subunit beta
3279_ssl8005-sacB ATGAAACGCCAATCTGTCCTGCAAT… DNA polymerase subunit beta
1460_ssl2749-sacB ATGAAATGCCAATCAGTCCTGCAAT… DNA polymerase subunit beta
2521_sll0544-codA ATGCCCGTATATTTCTATTGGGGCG… DNA polymerase III subunit delta; holA holA
1910_slr0446-sacB ATGAATCGCTTCCAATCTATCCTTG… DNA polymerase III subunit dnaX and dnaZ
0969_sll1360-sacB ATGGCCTACGAACCTCTGCACCATA… DNA polymerase III subunit dnaX
0293_slr0965-sacB ATGAAACTCATCTGTCGTCAAAGTG… DNA polymerase III beta subunit dnaN
0664_sll1572-sacB ATGGTTAAAGTTATCGGTCGTCGTT… DNA polymerase III alpha subunit dnaE
3160_slr0603-sacB ATGTCCTTCGTCGGTCTCCATATCC… DNA polymerase III alpha subunit dnaE
2779_slr0707-sacB ATGTTTATGTCTGCTAAATCCCCTT… DNA polymerase I polA
1188_sll1629-sacB GTGTACTGTTACGACCCCAGACAAT… DNA photolyase phr
3349_sll5026-sacB ATGGCGGATACTCATAATTTTATTG… DNA phosphorothioation-associated putative methyltransferase
1092_sll1772-sacB GTGAGTGATTCCACCAATTTAACCA… DNA mismatch repair protein; MutS mutS
0802_slr1199-sacB ATGGGCATAGCAGAAAAGTCGATGA… DNA mismatch repair protein; MutL mutL
1243_sll1165-sacB ATGGATTGCCGACTTAAGTGCACTA… DNA mismatch repair protein mutS
0010_sll1209-sacB ATGACCACCCCCGATCGCCTATTGC… DNA ligase ligA
0644_sll1583-sacB ATGACCCCATTGGAATTGAGCTACC… DNA ligase lig
0927_sll1143-sacB GTGCCCATGACTGTTGTCCCCGACT… DNA helicase II uvrD
1142_sll2005-sacB GTGACCATGACGACCACGAACTACG… DNA gyrase B subunit gyrB
2412_slr0417-sacB ATGACTGACTCGCCCGATCGCCTGA… DNA gyrase A subunit gyrA
0524_sll1941-sacB GTGGGGAGGAGAATCAGCCTTTCCA… DNA gyrase A subunit gyrA
3391_ssl5068-sacB GTGAGGAGTTCTAGCCATGGAACCC… DNA cytosine methyltransferase
3487_ssr6032-sacB ATGAAAAGGAGTTTTAGCCATGGAA… DNA cytosine methyltransferase
3431_ssl5108-sacB GTGAGGAGTTCTAGCCATGGAAAGC… DNA cytosine methyltransferase
0880_sll1712-sacB GTGTCTATCCGGGCTGTGGAGCCTC… DNA binding protein HU
3043_sll0729-sacB ATGGAGGAAACCGGGGAAATAAATA… DNA adenine methylase
1961_sll0355-sacB ATGCAAATTGAATCAAAAACAAATA… DMT family transporter, IS1 family transposase
0169_sll1319-sacB ATGCGAATTTTATCTAATGTTAATC… DMT family transporter
2570_slr0848-sacB ATGACCCGCCGAGAGAGTGCCAATC… DivIVA domain-containing protein
0633_slr1394-sacB ATGCAAGATTTTGGCGCAGTGTTCC… divergent PAP2 family protein
0090_sll0708-sacB ATGGCTTTTCGACCCCGCAAACGCT… dimethyladenosine transferase ksgA, rsmA
3097_slr0452-sacB ATGTCCAACAATCCCAGAAGCCAGG… dihydroxyacid dehydratase ilvD
0697_slr2026-sacB ATGGACCAGTTGGATCAATTGAGTG… dihydropteroate pyrophosphorylase folP
2802_sll0744-sacB ATGGATCTCACTACCCAATACCTCG… dihydroorotate dehydrogenase-like protein
2917_slr1418-sacB ATGTTGCGTTTTGCCCGTTCTCTCT… dihydroorotate dehydrogenase pyrD