Plasmids and Cultures

This database contains entries for 3,572 known and predicted gene coding sequences in Synechocystis sp PCC 6803 based on the Kazusa genome sequence and nomenclature (http://genome.microbedb.jp/cyanobase/GCA_000009725.1). Plasmids for generating marked mutants and mutant strains can be searched for by gene Name/Accession (e.g. 'sll1226' or '1513_sll1226-sacB'),  gene homology (e.g. 'hydrogenase large subunit'), Gene ID (e.g. hoxH), or by a portion of the gene coding sequence Sequence (CDS).

Please note, the library is still being completed. Plasmids and/or marked mutants may not be available. Users can also search for available materials by Plasmids made or Mutant made.

Plasmids, mutants and the unmarking spacer plasmid pUC19K-UL are currently available on request. Regardless of the segregation status of the mutant, open reception of a cyanobacterial mutant strain we recommend 1-2 cycles of restreaking on a selection plate containing kanamycin (100 μg/ml).

Name Sort ascending CDS Gene Homology Gene ID
1972_slr0148-codA ATGACCATGCCACCATTATGGAATT… ferredoxin
1971_slr0147-sacB ATGGCTCGAAGGTATGGTTCAAGCC… hypothetical protein
1970_slr0146-sacB ATGCAAAAAGATTTTGAACGGCTTT… potential phycobilisome proteins
1969_slr0145-sacB ATGATTCATCAAGCCCAGTGGGGGC… hypothetical protein
1968_slr0144-sacB ATGGGTTACCTGCCAAGCCAAACTG… hypothetical protein
1967_slr0143-sacB ATGTCGCCGATCGCCCTCAATTTAT… beta transducin-like protein
1966_slr0142-sacB ATGAAACTATTATCAAGTGGGCAGT… DUF1275 domain-containing protein
1965_slr0408-sacB ATGACTATCAATTTGGCCGATCGCC… DUF4114 domain-containing protein
1964_slr0407-sacB ATGACATACTTTGCCAGCGACTTTC… class I SAM-dependent methyltransferase
1963_slr0406-sacB ATGGAAAAGCTTACCATCACTCGAC… dihydroorotase pyrC
1962_sll0354-sacB ATGGCTACTGAACTACTTTTTAATC… DUF4281, DUF2442 domain-containing protein
1961_sll0355-sacB ATGCAAATTGAATCAAAAACAAATA… DMT family transporter, IS1 family transposase
1960_sll0356-sacB ATGGCCATGGAGGTAAAAATTTGCG… 5-phosphoribosyl anthranilate isomerase trpF
1959_ssr0657-sacB ATGATTCCCTTTGCTTCCCAAACCT… hypothetical protein
1958_slr0404-sacB ATGCTTAAGATGCTCAAGAATTTAC… DUF1517 domain-containing protein
1957_ssl0707-sacB ATGACGGTTTCTGAAGTTAGGGGCT… nitrogen regulatory protein P-II glnB
1956_slr0402-sacB ATGCCTACTTTAATTGTCGCCACGG… RdgB/HAM1 family non-canonical purine NTP pyrophosphatase rdgB
1955_slr0401-sacB ATGAATTTACCCTGCTATTCCCGCC… spermidine/putrescine-binding periplasmic protein
1954_slr0400-sacB GTGCCAAAAGTCGGCATCATTTTCA… NAD(+) kinase
1953_slr0399-sacB ATGCGAGTTTTGGTGGTAGGCGGCA… NAD-dependent epimerase/dehydratase family protein ycf39
1952_slr0398-sacB ATGACTACAATAATGGTCAACCTGG… hypothetical protein
1951_slr0397-sacB ATGGTTCTCACCCAGTTCGCCTCCA… DUF3038 domain-containing protein
1950_sll0359-sacB ATGTTATATTTTATCTTATGTAGAC… Cyanobacterial Signature Protein AbrB family transcriptional regulator
1949_sll0360-sacB ATGGAAAATTTGATGGAGTTTTGGC… CPBP family intramembrane metalloprotease
1948_sll0361-sacB ATGCCAATGTCCCCATCAGTAAGAT… hypothetical protein
1947_sll0362-sacB ATGACCACTACCCCGCCCGTCCTCA… alanyl-tRNA synthetase alaS
1946_slr0395-sacB ATGCGACTAGAACAGTTACAGGCTT… transcriptional activator protein; NtcB ntcB
1945_slr0394-sacB GTGCCCCTAGATAACGGCAGCATCA… phosphoglycerate kinase pgk
1944_sll0364-sacB ATGTTACCGCCGACAATGGAAAGCC… DUF2358 domain-containing protein
1943_slr0393-sacB ATGAATGAAGATTTAGATAATGACT… HNH endonuclease< DUF433 domain-containing protein
1942_slr0392-sacB ATGCTTATGAGGAGGCAAAAATTGG… hypothetical protein
1941_slr0294-sacB ATGACGAAGAAAGAGGCTCTTACCT… hypothetical protein
1940_slr0293-sacB ATGCCCAACCTAGAGCCCGCCGTTG… P protein of glycine cleavage complex gcvP
1939_sll0257-sacB ATGAATGAAAACTCCATGGAATTTT… tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE tsaE
1938_slr0292-sacB GTGGGTCAATTTTTACCCAGACCCC… sirohydrochlorin chelatase
1937_ssl0483-sacB ATGGGGTTTGCGGATCTGTCGATTC… hypothetical protein
1936_sll0258-sacB GTGAAACGCTTTTTTCTGGTGGCGA… cytochrome c550 psbV
1935_slr0291-sacB ATGAAAAACCAACTTTACGAAACGG… DUF29 domain-containing protein
1934_slr0288-sacB ATGACTGGAAACGCCGCCCGCACCC… glutamate--ammonia ligase glnN
1933_slr0287-sacB GTGACTACCCTAAACTACGTTGAAT… KH domain-containing protein
1932_ssr0482-sacB ATGATTAAACTCCGTCTAAAACGCT… 30S ribosomal protein S16 rps16
1931_sll0260-sacB ATGTTTTCCTCTTCTGTTGAGCTGG… HlyC/CorC family transporter, hemolysin
1930_slr0286-sacB ATGATTAATCCGATCAAGGCTGTCA… hypothetical protein
1929_slr0285-sacB ATGGTAAAAGAAAATTCAGCAGAAT… radical SAM protein
1928_slr0284-sacB ATGTTACAACTACTTATCGTCTGGA… phage holin family protein
1927_sll0261-sacB ATGAAACCGCACATCATCGTTTGTG… potassium channel
1926_sll0262-sacB ATGCTAACAGCGGAAAGAATTAAAT… delta-6 desaturase desD(des6)
1925_sll0263-sacB ATGATCGAAGCCTTTCTGTTGCCCG… hypothetical protein
1924_sll0264-sacB GTGTTTGGCGGAAGTGTCAACGGAA… aromatic ring-hydroxylating dioxygenase subunit alpha
1923_sll0265-sacB ATGGCACAAACTGTTAGTGGCTTTA… ferritin-like domain-containing protein
1922_sll0266-sacB ATGTGTACTATGACTGCTGTGATTA… hypothetical protein
1921_sll0267-codA ATGTCCATCATGCCCCCTCCTCCGT… EAL domain-containing protein
1920_sll0268-sacB ATGAGGCCAGCATTTTCTCCCCTTC… YtxH domain-containing protein
1919_sll0269-sacB ATGACCGAACCCCTTTTCTGGCTGG… hypothetical protein
1918_sll0270-codA ATGACTGTTTCTCCCTCAGCCCTGG… primosomal protein N; pirA priA
1917_slr0280-sacB ATGGCCCTAGGGGATTTGCTGAAAA… phosphodiester glycosidase family protein
1916_sll0271-sacB GTGCCGGCTCTGGCACAGGGTAAAC… N utilization substance protein B nusB
1915_sll0272-codA GTGGCGCTCATTCCCTTTTACGTAT… DUF2996 domain-containing protein ndhV
1914_sll0273-sacB ATGATTAAGCTCCCTGTGCTCCTCG… Na+/H+ exchanger
1913_sll0274-sacB ATGTTAATGAATTTTTTAGTAATTT… pentapeptide repeat-containing protein
1912_slr0448-sacB ATGGCTAAAGCCCGGACAAAGTTTG… DNA repair protein RadA sms/radA
1911_slr0447-sacB ATGACTAACCCTTTTGGAAGACGTA… urea ABC transporter substrate-binding protein, negative aliphatic amidase regulator amiC/urtA
1910_slr0446-sacB ATGAATCGCTTCCAATCTATCCTTG… DNA polymerase III subunit dnaX and dnaZ
1909_sll0418-sacB ATGCCCGAGTATTTGCTTCTGCCCG… sterol-C-methyltransferase
1908_sll0419-sacB ATGTACTTTCTGCTTGTAACTCTGG… hypothetical protein
1907_sll0420-sacB ATGGCAACTATGATTCCTGGCGAAA… urease beta subunit ureB
1906_slr0445-sacB ATGGAAGATATTGCATTTATGCCAC… Uma2 family endonuclease
1905_sll0421-sacB GTGATCGAACGTTATACCCTGCCTG… adenylosuccinate lyase purB
1904_sll0422-sacB ATGACCCCCAAATTAATCATCCATG… asparaginase
1903_sll0423-sacB ATGTTGACCCACCACCGTCGTCCGG… hypothetical protein
1902_sll0424-sacB ATGCACCAAGCCCAGGCCGAAAGGC… radical SAM protein
1901_slr0444-sacB ATGGCCTTGCTTTCCCTCAACAATC… 3-phosphoshikimate 1-carboxyvinyltransferase aroA
1900_sll0426-sacB ATGAAATACCATTATTCCCCATGGA… hypothetical protein
1899_slr0443-sacB GTGTTTGTTTGCGAACAGCCCATCT… hypothetical protein
1898_sll0427-sacB ATGAGGTTTCGTCCGTCTATTGTGG… photosystem II manganese-stabilizing polypeptide psbO
1897_ssr0761-sacB ATGGGGGAAACTTTGCCCCAACAAT… type II toxin-antitoxin system prevent-host-death family antitoxin
1896_ssr0759-sacB GTGTTTGTAACCAGAGTAGCTCTCA… hypothetical protein
1895_ssr0756-sacB ATGACCATCAATGGTTTGCAGGTTC… PIN superfamily domain
1894_sll0428-sacB ATGATTATTGAAGAGATTGTCAATA… type II toxin-antitoxin system VapC family toxin, BrnT family toxin
1893_slr0442-sacB ATGAATACTCGCTTTTTCCTCAATT… hypothetical protein
1892_sll1520-sacB ATGCTACTATCCCTGCGGATCAATA… DNA repair protein; RecN recN
1891_sll1521-sacB GTGGGAATCCATGCAAAACTGGAGA… flavin oxidoreductase flv1
1890_sll1522-sacB ATGAATATACCCAACTGGGTAACTG… CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase pgsA
1889_slr1649-sacB ATGTCCCATTCCACTGATCTTTCCG… chromophore lyase CpcT/CpeT
1888_ssr2754-sacB ATGAAAGCAATTACAACCACCCAAG… type II toxin-antitoxin system Phd/YefM family antitoxin, Txe/YoeB family addiction module toxin
1887_slr1648-sacB ATGACCGCTACCCTCTCCCGGGCCG… carotenoid oxygenase family protein
1886_slr1647-sacB ATGGAACACGCCTTAATCGAACTGG… iron export ABC transporter permease subunit FetB fetB
1885_slr1646-sacB GTGAACCATCCCGATTTCCCCCCCA… ribonuclease III rnc
1884_slr1645-sacB GTGATGTCCTTTTTGAAAAATCAGT… photosystem II 11 kD protein psbZ
1883_slr1644-sacB GTGGCAACTTCTAGGACACAACGGG… tetratricopeptide repeat protein
1882_sll1524-sacB GTGTCAATCAAGTTAGTAGTATTGG… Cof-type HAD-IIB family hydrolase
1881_slr1643-sacB ATGTACAGTCCCGGTTACGTAGCGA… ferredoxin-NADP oxidoreductase petH
1880_sll1525-sacB ATGACCACACAGCTAGACCGCGTGG… phosphoribulokinase prk
1879_ssl2971-sacB ATGATGCCATTTTTACTGGTGGTGG… hypothetical protein
1878_slr1641-sacB ATGCAACCCACAGATCCTAATAAAT… ClpB protein clpB2
1877_sll1526-sacB ATGACTTGGAATGAGGGCTACGTCC… methyltransferase domain-containing protein
1876_sll1527-sacB ATGAAAAAATTTGTTGTTATTGACC… glycosyltransferase
1875_sll1528-sacB ATGAAGGTATTAATCACAGATTTTG… glycosyltransferase
1874_sll1530-sacB ATGTTTAACAGAATCAAAGATAAAC… FkbM family methyltransferase
1873_sll1531-sacB ATGTTAGTTCCCCTTCTTGGTTTGG… hypothetical protein
1872_slr1639-sacB ATGGCTAAGGAAAAAGAAAGGATAA… small protein smpB
1871_slr1638-sacB ATGGAATTTAACTTTGACTTTCATA… DUF760 domain-containing protein
1870_slr1636-sacB GTGATGAATTTGCTTTGCTATAGGA… Predicted metal-dependent hydrolase domain (super family DUF309)
1869_slr1635-sacB ATGATATCAAATTTTGGACATATTG… transposase
1868_ssl2982-sacB ATGACCAAGCGTAGTAATTTGGATT… DNA-directed RNA polymerase subunit omega
1867_sll1532-sacB ATGTTTAAGCCCCTTTTTCCCCTGA… hypothetical protein
1866_slr1634-sacB ATGGAGCTTTCGTCAAGGGAAGGAG… hypothetical protein
1865_sll1533-sacB ATGAACCAACCTCCCCGCCCCTCTG… twitching mobility protein pilT
1864_sll1534-sacB ATGCGGTACGCCCTAGTCCACGAGT… glycosyltransferase family 4 protein
1863_sll1535-sacB ATGACTGCCAATAGCTCACCGATCT… galactosyl-1-phosphate transferase rfbP
1862_slr1629-sacB ATGATTGACCAAATTATTGATGAAG… RNA pseudouridine synthase
1861_slr1628-sacB ATGGCTACTCTCCAGGATTCCCGGG… DUF2237 family protein
1860_sll1536-sacB ATGCTTAACCCAAACCTAGCAGAGA… molybdopterin biosynthesis MoeB protein moeB
1859_slr1627-sacB GTGTTAACCATGGGTTGGTCTAACA… membrane protein
1858_slr1626-sacB ATGGCAATTTTTGACGGGGTGATCA… dihydroneopterin aldolase folB
1857_sll1537-sacB ATGCCTCCCCAATTTCCCTTAGCTA… NUDIX domain-containing protein
1856_sll1538-sacB ATGGCGGCCATCAACCCCGGCAATT… beta-glucosidase bgl
1855_slr1624-sacB GTGCTCGATCGCCATTGGCATAATC… hypothetical protein rre18
1854_slr1623-sacB ATGCTTGTTAAATCCACTACCCGCC… NAD(P)H-quinone oxidoreductase subunit M
1853_slr1622-sacB ATGGCAGGGGAAAATAGACCATGGA… inorganic pyrophosphatase ppa
1852_sll1540-sacB ATGGTCTATTTTCCCCTGCCATCGC… dolichyl-phosphate-mannose synthase dpm1
1851_ssr2723-sacB ATGATGGCGACCGAAGTTTTAAACA… ATP-dependent Clp protease adapter clpS
1850_sll1541-sacB ATGGTCACTTCCCCCCCAACCAGTT… carotenoid oxygenase family protein
1849_slr0960-sacB ATGGACTGGCTTTTCTATTTGTTCT… hypothetical protein
1848_slr0959-sacB ATGCTAGCTTCGTTAACACAGCCGT… CPBP family intramembrane metalloprotease
1847_sll0905-sacB ATGCCTCCAACTTTTGTTCTTGCTT… maf protein maf
1846_slr0958-sacB ATGACCCTGCGCCTGTACGATTCCC… cysteinyl-tRNA synthetase cysS
1845_slr0957-sacB ATGACAGCAAACAAATCCCATTACC… DUF1816 domain-containing protein
1844_slr0955-sacB ATGACTGAAATGCCCAAGAAGAAAT… 23S rRNA (guanosine(2251)-2'-O)-methyltransferase rlmB
1843_slr0954-sacB ATGACCCAGTTTGATGACCATCCCC… Mini-ribonuclease 3
1842_ssr1600-sacB GTGGTGCTGGACTTGTCCACCATTG… anti-sigma factor antagonist
1841_slr0953-sacB ATGCGACAGTTATTGCTAATTTCTG… sucrose-phosphate phosphatase
1840_slr0952-sacB ATGACCGTTAGTGAGATTCATATTC… fructose 16-bisphosphatase fbp
1839_slr0951-sacB ATGCATTTACTAATTCCAGCGGCGG… 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
1838_sll0909-sacB ATGGACGACCTCACCATCTACACAA… DnaJ family molecular chaperone
1837_sll0910-sacB ATGACTGATAACTACAAACAAAATT… tetratricopeptide repeat protein
1836_sll0911-sacB ATGAATATTCAAGAAATTCAAACTA… hypothetical protein
1835_slr0950-sacB ATGGCCAAAGCAGATAAACAACGAC… TlyA family RNA methyltransferase
1834_slr0949-sacB ATGGATCTATCACAGTTAATCTTTA… high-affinity branched-chain amino acid transport permease protein livH
1833_sll0912-sacB ATGGCTCTCATCACTGTTCAATCCC… ABC transporter ATP-binding protein
1832_sll0913-sacB GTGAGAATAGTTACTATGCTTGCCT… Uma2 family endonuclease
1831_slr0948-sacB ATGAGTGCAGATCCCAATCGTATTG… cofactor assembly of complex C subunit B
1830_slr0947-sacB GTGGTCGATGACGAGGCCAGCATCC… response regulator transcription factor
1829_slr0946-sacB GTGAAAAAGGTAATGTTCGTTTGCA… arsenate reductase arsC
1828_slr0945-sacB ATGACCGACTTTAACCATCCTCCCC… NADPH-dependent quinone reductase ArsH arsH
1827_slr0944-sacB ATGGTCAATCGCATTAACCCCAAAG… transporter
1826_sll0914-sacB ATGCCCGCCCCCAAAATTATTAAAA… hypothetical protein
1825_slr0943-sacB GTGATGACTCTCGAACCAAACCAGG… fructose-bisphosphate aldolase fda
1824_slr0942-sacB GTGCAGAGTTTCAATAGGATAAATT… aldehyde reductase
1823_slr0941-sacB ATGGCTAATTGGTTAGAACATAGCG… membrane protein
1822_slr0940-sacB ATGCGTGTTGCAATTGTGGGAGCAG… zeta-carotene desaturase precursor crtQ
1821_sll0915-sacB ATGCCTCTGCTTGTGTTCCGTTCTC… protease pqqE
1820_sll0916-sacB ATGATTCCCCTAGAACATCCGATTT… precorrin isomerase cbiC
1819_slr0938-sacB ATGAGTAATCTTTCGATCGCCGATG… Mur ligase family protein
1818_slr0937-sacB ATGAATAACTCTGATTTCCTGTCTT… hypothetical protein
1817_slr0936-sacB GTGATGCGAATTTTGGTAACAAACC… nicotinate-nucleotide pyrophosphorylase nadC
1816_slr0935-sacB ATGTCCCCTGTTTATCTCTGGATTG… NfeD family protein
1815_sll0920-sacB ATGAACTTGGCAGTTCCTGCATTCG… phosphoenolpyruvate carboxylase ppc
1814_sll0921-sacB ATGGAGAAAATTCGCATTGCCTTAA… NarL subfamily
1813_slr1697-sacB ATGAGTTTTTGCGTTAATCCCAATT… eukariotic protein kinase pknA
1812_sll1553-sacB ATGCGCATCTCTGTCAACTGGCTGC… phenylalanyl-tRNA synthetase pheT
1811_slr1694-sacB ATGAGTTTGTACCGTTTGATTTACA… activator of photopigment and puc expression
1810_slr1693-sacB ATGAGCAATTCAGTTTTGTCCACTT… PatA subfamily
1809_slr1692-sacB ATGAATTCCTCGCTTTACCATGGTG… EAL domain-containing protein
1808_slr1691-sacB ATGTTTACCATTGCCCTTGCCCAGC… NH(3)-dependent NAD(+) synthetase nadE
1807_slr1690-sacB GTGTCAGCCAAAATTAGAGCGGTGA… NUDIX hydrolase
1806_slr1689-sacB GTGCCAGAACTACCAGAAGTTGAAA… formamidopyrimidine-DNA glycosylase mutM
1805_ssr2831-sacB ATGGCCTTAAATCGTGGTGACAAAG… photosystem I subunit IV psaE
1804_sll1555-sacB ATGCCCAAAATTTTGATAATTGAAG… hybrid sensory kinase
1803_sll1556-sacB ATGGATAGCACCCCCCACCGTAAGT… Hydroxyacid reductase
1802_sll1557-sacB ATGAAATGGCATAAAGAGAGCAAAG… succinyl-CoA synthetase sucD
1801_sll1558-sacB ATGAAAGCCATGATTTTGGCCGCCG… uridine diphosphateglucose pyrophosphorylase (UDP-glucose pyrophosphorylase)
1800_slr1687-sacB ATGGCAGAAGAAATTCTCAGAAACC… HEAT repeat domain-containing protein
1799_ssl3044-sacB GTGACCATTACCTTTGTTAAAGAGC… hydrogenase component
1798_slr1686-sacB ATGGCCGCCATCACCCTCACCCTCC… FHA domain-containing protein
1797_sll1559-sacB ATGGATAATAAGCAAATGTTGATGA… Serine/glyoxylate aminotransferase, soluble hydrogenase 42 kD subunit
1796_slr1684-sacB ATGACTCGAATACCAGATATTAAAT… transposase
1795_slr1683-sacB GTGTCAGTAAATGCCTATGGTTACT… transposase
1794_sll1560-sacB ATGATATCAAATTTTGGACATATTG… transposase
1793_slr1682-sacB ATGACAAAGACAAGAGAGGCGAAAA… transposase
1792_slr1681-sacB ATGTCGGTTAAATTAGCGGTTCTAA… hypothetical protein
1791_sll1561-sacB ATGGTTGCACAAATCGATTCACAAC… delta-1-pyrroline-5-carboxylate dehydrogenase putA
1790_sll1562-sacB ATGGCTTCCGTACCATTTACAGACA… hypothetical protein
1789_sll1563-sacB GTGTATATCAGAGTGGATTCGACAG… hypothetical protein
1788_ssr2806-sacB ATGCACTCCGTCACCATTTCCCTGG… NUDIX hydrolase
1787_ssr2803-sacB ATGGACAACATTAAAATCGATCAGC… DUF29 domain-containing protein
1786_ssr2802-sacB ATGGCTTCTTCGGTTGGCGCGGACG… ABC transporter
1785_sll1564-sacB ATGGCTACCAAGAAAACTTCCCTTT… alpha-isopropylmalate synthase leuA
1784_slr1679-sacB ATGTCCTTTGATACCCCGCTCAAAC… D-alanyl-D-alanine dipeptidase
1783_ssr2799-sacB ATGGCCCATAAGAAAGGAACGGGGA… 50S ribosomal protein L27 rpl27
1782_slr1678-sacB ATGAGTTACGCCATTATTGAAATTG… 50S ribosomal protein L21 rpl21
1781_slr1677-sacB GTGACCACCTGGGTTCGTCCTGTTG… hypothetical protein
1780_slr1676-sacB ATGATGTTTCCTCTACTGGCCCTTG… DUF4079 domain-containing protein
1779_slr1675-sacB ATGCACGAAGTTAGTCTGATGGAGC… hydrogenase expression/formation protein; HypA hypA
1778_slr1674-sacB GTGACCCATGAACCCCAACGTCCCC… DUF760 domain-containing protein
1777_slr1673-sacB GTGTATCCGTTGACCAGTGACATTG… rRNA methylase spoU
1776_slr1672-sacB ATGACAGCAAAACATAATCAGTATG… glycerol kinase glpK
1775_slr1670-sacB ATGAAAACATTGAATCGTATCCATC… hypothetical protein
1774_sll1566-sacB ATGAATTCATCCCTTGTGATCCTTT… alphaalpha-trehalose-phosphate synthase otsA/ggpS
1773_sll1085-sacB ATGCGTAATTTCCCAGAAATCCAAA… glycerol-3-phosphate dehydrogenase glpD