Plasmids and Cultures

This database contains entries for 3,572 known and predicted gene coding sequences in Synechocystis sp PCC 6803 based on the Kazusa genome sequence and nomenclature (http://genome.microbedb.jp/cyanobase/GCA_000009725.1). Plasmids for generating marked mutants and mutant strains can be searched for by gene Name/Accession (e.g. 'sll1226' or '1513_sll1226-sacB'),  gene homology (e.g. 'hydrogenase large subunit'), Gene ID (e.g. hoxH), or by a portion of the gene coding sequence Sequence (CDS).

Please note, the library is still being completed. Plasmids and/or marked mutants may not be available. Users can also search for available materials by Plasmids made or Mutant made.

Plasmids, mutants and the unmarking spacer plasmid pUC19K-UL are currently available on request. Regardless of the segregation status of the mutant, open reception of a cyanobacterial mutant strain we recommend 1-2 cycles of restreaking on a selection plate containing kanamycin (100 μg/ml).

Name CDS Gene Homology Gene ID Sort descending
3352_slr5029-sacB ATGACAAAGACAAGAGAGGCAAAAA… transposase
3543_slr6088-sacB ATGCTCCTAGCCGAAATTCTCGAAA… hypothetical protein
3353_sll5030-sacB ATGAAAACCTCTTTAGATTGTATTC… DUF89 family protein
3417_sll5094-sacB ATGAAGGGTTGGCTATTGGATACCA… type II toxin-antitoxin system VapC family toxin
3227_slr7059-sacB ATGAGCACATTGCAACAATTCAGCC… MerR family transcriptional regulator
3291_sll8017-sacB GTGACAGAATTGGCCCAGGAAGCCG… hypothetical protein
3101_slr0454-sacB GTGCGAATCAATTCATCTTCAAAGA… cation or drug efflux system protein
2661_slr0626-sacB ATGTCTATGCCTCGCCTCAGCCTTT… tetratricopeptide repeat protein
2725_slr0788-sacB ATGAATACTAATCTCATTCTGGATG… nicotinate phosphoribosyltransferase
2535_slr0582-sacB ATGGCAGGATTGCGTCAAAATTTGA… hypothetical protein
2599_slr0095-sacB ATGGGTAAGGGCATCACCGGTTTTG… O-methyltransferase
2409_sll0394-sacB ATGCGTAACCAGTATTTTTCCCTCA… hypothetical protein
2473_sll0888-sacB ATGTTAGCGCTCCAACCCCGCTTTA… Uma2 family endonucleas
2347_slr0482-sacB ATGGCCAGTTCCCCCAGACCCACTG… methyltransferase domain-containing protein
0043_sll1396-sacB ATGAACTTTGATCTTTCAAAGCTAA… hypothetical protein
0169_sll1319-sacB ATGCGAATTTTATCTAATGTTAATC… DMT family transporter
0107_sll0700-sacB ATGTTAAGAGAACTAATTAAGCTCT… transposase
1969_slr0145-sacB ATGATTCATCAAGCCCAGTGGGGGC… hypothetical protein
1843_slr0954-sacB ATGACCCAGTTTGATGACCATCCCC… Mini-ribonuclease 3
1653_sll1866-sacB GTGCCCCTAGTTAGTCAATCGGATT… Sua5/YciO/YrdC/YwlC family protein
1717_sll1166-sacB ATGACTCAGTTAATTAAATCTTTAC… AI-2E family transporter
1401_sll1985-sacB ATGAAATTATCCGTTCTTACTGTGG… transposase
1275_slr1259-sacB ATGCTGTTTCGTCAATTGTTTGATC… MBL fold metallo-hydrolase
1149_slr2144-sacB GTGCCATCTCCGCTAACCTCTCCAT… Cyanobacterial Signature Protein
1213_sll0858-sacB GTGGTTACTAAGCGATCCCCCACGG… periplasmic heavy metal sensor
1023_slr0880-sacB ATGCAAGCTGTTGATTACACTACCC… secreted protein MPB70 precursor
1087_sll1774-sacB ATGTTTGACAATCTGTGCAAATTTC… Rpn family recombination-promoting nuclease/putative transposase
0961_ssr2067-sacB GTGATTATGACTGTTAGTAATATTT… type II toxin-antitoxin system HicB family antitoxin
0835_slr2078-sacB ATGTGGCATCTTCCTCCCAGTAATT… NUDIX hydrolase
0645_sll1582-sacB ATGAACGATAAGCAAAAAGCTTCAG… DEAD/DEAH box helicase
0709_sll1084-sacB GTGAAAACCATGCCAGTGCCCGTAG… TIGR03960 family B12-binding radical SAM protein
0519_ssr3452-sacB ATGGTTGCCCCCGTCAAGCAAAAGA… transposase
0583_slr1024-sacB ATGTCCCTAGAGCGTCAAACTTTAA… hypothetical protein
0393_sll0644-sacB ATGGTTTATGCCCCTCGCCCATTGC… alpha/beta hydrolase
0457_slr1050-sacB ATGCTTAACCAGTTCCCGAAGCTTC… phospholipid carrier-dependent glycosyltransferase
3511_slr6056-sacB ATGAAAAAAGTAGGATTTGATATCA… helix-turn-helix domain-containing protein
3385_sll5062-sacB ATGGGGAGTTTTGGGCTATTGTTCA… hypothetical protein
3449_slr5126-sacB ATGAAAAAATTACTATTATTGTTAA… hypothetical protein
3259_slr7091-sacB GTGTTTAAAAAACTTCATACTATTT… hypothetical protein
3323_sll5132-sacB DUF262 domain-containing protein
3133_slr0587-sacB ATGATTACCGTCGCACGAAAAACTA… hypothetical protein
3197_sll7029-sacB ATGACCCCAGTTCAGCTAAAAAACT… MoxR family ATPase
3007_slr1576-sacB ATGGGCAATCGATCTCGTTTTGGGG… hypothetical protein
2755_sll0778-sacB ATGGTCATGAATCAAAATAATAGAC… ABC transporter
2819_sll0040-sacB ATGCTGGGTGATATCCAAGTCCCCC… chemotaxis protein CheW
2503_ssl1690-sacB ATGGCCGCTAAAATGAAAAAGGGCA… NAD(P)H-quinone oxidoreductase subunit O
2567_slr0846-sacB ATGGGCAAGGATGGCTTCTATACTA… RrF2 family transcriptional regulator
2441_sll0188-sacB ATGGAGACTGGGACCGTCAAAGTTT… hypothetical protein
2315_sll0063-sacB ATGACAGAACCAGCCAACAATCATC… AI-2E family transporter
2125_sll0335-sacB ATGCAACTTCAGAGCTACGACCCAG… MEKHLA domain-containing protein
1999_slr1924-sacB ATGAAAAAATCCTTATTTATGGTCG… D-alanyl-D-alanine carboxypeptidase
0011_slr1315-sacB GTGCAACCCAAGCAGAGGGCTGTCC… Uma2 family endonuclease
0137_slr0249-sacB ATGCTGTCAAAAACTATTCATGAAG… DUF1818 family protein
1873_sll1531-sacB ATGTTAGTTCCCCTTCTTGGTTTGG… hypothetical protein
0075_sll1052-sacB ATGGCCATTAACACTTTTACTATTA… sulfite exporter TauE/SafE family protein
0201_slr1110-sacB ATGGGGCCATTGTGGCCTTGTTGGA… DUF1092 family protein
1937_ssl0483-sacB ATGGGGTTTGCGGATCTGTCGATTC… hypothetical protein
1747_sll1095-sacB ATGGCTGAACAGCATTTAATTATTT… DUF2064 domain-containing protein
1811_slr1694-sacB ATGAGTTTGTACCGTTTGATTTACA… activator of photopigment and puc expression
1621_slr1970-sacB ATGAGCATCCAAGAAATCTTTACCA… hypothetical protein
1495_slr1322-sacB ATGCCTCCTACTCTGCTCCTCTCCC… metalloprotease
1181_slr1820-sacB ATGAAACTAACTTGGTTGAATTCCT… glycosyltransferase family 39 protein
0677_slr2010-sacB ATGACTGGACTCCTTGATATTGGTT… cation:proton antiporter
0741_ssl3446-sacB ATGGTAGTGTCCCAAAATTTTATTC… DUF2949 domain-containing protein
0551_slr1908-sacB ATGAATAAGTTGACCAGTCATTTAC… hypothetical protein
0615_slr1384-sacB GTGAAGATTCTTTTCATTAGCAACG… Cyanobacterial Signature Protein
0425_slr1599-sacB GTGAGTATTCCCCTGGCTACGGGAT… hypothetical protein
0489_sll1640-sacB ATGATTTATCTAACCCGTCTTCAGC… carbon-nitrogen hydrolase family protein
0299_sll0936-sacB ATGGCCAGAGATTTACGGGGATTCA… UbiD family decarboxylase
0363_sll1025-sacB ATGGAAAATTTCGATGCCATTGTGG… FAD-binding oxidoreductase
3479_ssr6024-sacB ATGACTATTCAAGAAGCCAAAGAGA… hypothetical protein
3544_ssr6089-sacB ATGGGACTTTTAAGTTATGGTCTTG… hypothetical protein
3354_ssl5031-sacB GTGCACGTTTCTTTGAATGTGGTTC… DUF4079 super family conserved domain
3418_ssl5095-sacB ATGACTAATTCAGCAACCCAAGGTC… type II toxin-antitoxin system prevent-host-death family antitoxin
3228_slr7060-sacB ATGAATACGCCCCAAGTTAGTTTTA… VWA domain-containing protein
3292_sll8018-sacB GTGGTCATGGGGATAATCAAGAATC… hypothetical protein
3102_slr0455-sacB ATGAAGACAACGTTGTTTTCGGTAA… hypothetical protein
3166_slr0609-sacB ATGTCCACCGTTGACCATGCCCCCC… GTP-binding protein
3040_sll0732-sacB ATGGCCAAACCAGTTAATTTGCCTG… hypothetical protein
2662_slr0099-sacB GTGAGAATGAGAAGCTTTGAATACT… transposase
2726_slr0789-sacB ATGGTTGACTACAGGAAAGCCCGAT… HPP family protein
2536_sll0540-sacB ATGGGGCAAAAAAATGAAGCGGTTA… PstS family phosphate ABC transporter substrate-binding protein
2600_slr0096-sacB ATGGCTACTACCCTGCTTTCCCCCA… low affinity sulfate transporter
2474_ssr1513-sacB ATGGCGATCGCCAAATTTGAATTTC… hypothetical protein
2158_sll0763-sacB GTGGTCTTGGGCAGTCAGAACGACC… DUF4340 domain
2032_ssr3304-codA ATGCAGTGGCAAGAATCTTTACCCT… hypothetical protein
2096_sll0163-codA ATGACTGTTATGTTATCTTGCCTCA… beta transducin-like protein
0170_sll1318-sacB ATGCCCTCGTCACCAGTTCAATTTA… hypothetical protein
1906_slr0445-sacB ATGGAAGATATTGCATTTATGCCAC… Uma2 family endonuclease
0108_sll0699-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
1970_slr0146-sacB ATGCAAAAAGATTTTGAACGGCTTT… potential phycobilisome proteins
1780_slr1676-sacB ATGATGTTTCCTCTACTGGCCCTTG… DUF4079 domain-containing protein
1654_sll1390-sacB GTGGAGTTTCACCGGCAATTGCCCA… YgcG family protein
1718_sll1447-sacB ATGAGAATGCTATCGGTGTTTGGGG… DUF4359 domain-containing protein
1592_sll1247-sacB GTGTCTTTGACCTTATCTCATGATT… hypothetical protein
1402_sll1984-sacB ATGTTAAGAGAACTAATTAAGCTCT… transposase
1466_sll1999-sacB ATGGATAGAGGATTTTGTGACTTAC… transposase
1276_slr1260-sacB ATGGTCAGTTGGTGTCAGTCCCTTT… Cyanobacterial Signature Protein
1214_sll0857-sacB ATGCTCGGCGGGCCATGCGGGAATT… hypothetical protein
1088_slr1869-sacB ATGATAACTATGAATTTTAAACTGG… hypothetical protein
0898_sll1464-sacB GTGACTAATCCCTTTCTGAATTTGA… YdiU family protein
0836_ssl3712-sacB GTGGGGGAAACCAAATTGACAGCAG… hypothetical protein
0520_slr2036-sacB ATGATATCAAATTTTGGACATATTG… transposase
0584_slr1025-sacB ATGAAAAATAAGTTGGGAATAATAT… hypothetical protein
0394_slr0686-sacB ATGACTAACCAACCCAACCAAGTGG… DUF4870 domain-containing protein
0268_slr1298-sacB ATGCTGGCTAAGCTCCGCCAACGCC… FUSC family protein
0332_slr1616-sacB ATGAATCAACGAATCAAAGTAATGA… ATP-grasp domain-containing protein
3512_slr6057-sacB ATGGCAAGACGAAAGCAACCAAAAT… ImmA/IrrE family metallo-endopeptidase
3386_sll5063-sacB GTGATAGCCTTGCTTCAGCGAGGGG… hypothetical protein
3450_slr5127-sacB ATGAGAAAAATCTCAATTAACAGAT… hypothetical protein
3324_ssl5001-sacB ATGAATACCGTAACCGCCGTAAGAG… no conserved domains
3198_sll7030-sacB ATGGTGTTAAAAATTGAACTTCTTG… GNAT family N-acetyltransferase
3072_slr1661-sacB ATGCCCAGGGCCATGTTAAGTTGCC… ShlB/FhaC/HecB family hemolysin secretion/activation protein
2756_sll0777-sacB GTGGATTGCCAGTCAATTAGTAAAC… D-alanyl-D-alanine carboxypeptidase family protein
2820_sll0039-sacB ATGGGCAGCGCACTTGTTATTGACG… response regulator CheY subfamily
2504_slr0921-sacB ATGCCCACCGGGGCAAAATTTTCCG… Cyanobacterial Signature Protein
2378_slr0630-sacB ATGGCGATCGCCAAATTACCCCGTC… MBL fold metallo-hydrolase
2252_sll0205-codA ATGCTACTGGACACCCACACGCTTT… type II toxin-antitoxin system VapC family toxin
2316_sll0062-sacB ATGCCCTCCTTGGGCTGTTGCTATA… hypothetical protein
2126_slr0373-sacB ATGGGTAACCTAATCATTAGTGATA… hypothetical protein
2190_sll0319-sacB ATGAACTGGAAATTTTTCCCACACC… DUF3747 domain-containing protein
2064_sll0298-codA ATGGCGTCGATTAGTGGGGCAATGG… DUF2062 domain-containing protein
0138_slr0250-sacB ATGGTTCGTTTGCTCATGGTATTCC… hypothetical protein
1874_sll1530-sacB ATGTTTAACAGAATCAAAGATAAAC… FkbM family methyltransferase
0202_slr1772-sacB ATGGTCGGGGCGATCGCCCGATGGG… linear amide C-N hydrolase
1938_slr0292-sacB GTGGGTCAATTTTTACCCAGACCCC… sirohydrochlorin chelatase
1622_slr1971-sacB ATGGGTTTTCGTCGCTATCAAAGTT… hypothetical protein
1560_slr0822-sacB ATGTCTGACCCTGATGTGTCCGTCT… cation-transporting ATPase; E1-E2 ATPase
1434_ssl2781-sacB ATGCAAAAAGCCGACGAATTTGCCA… hypothetical protein
1244_slr1243-sacB ATGGATTTTACTAAAATAAAGAGAA… ATP-binding protein
1308_slr1998-sacB ATGGAAGAGTTTGCAGTGGTGATAA… NAD(P)/FAD-dependent oxidoreductase
1182_sll1687-sacB GTGAGGGTATCTGACAAAAATTCCA… diguanylate cyclase
1056_slr1403-codA ATGGCTGCCTCTACCCAGACTCCGG… hypothetical protein
0678_ssr3409-sacB ATGGTACGAAATTCATTATCTTGGC… hypothetical protein
0616_slr1385-sacB ATGAGTATCTACGATCCCAACCCAG… GAF domain-containing protein
0426_slr1600-sacB ATGGACGATACTAACACCACATTAC… hypothetical protein
0364_ssl1972-sacB ATGATCAGCATTGATTTGACCCTTA… Cyanobacterial Signature Protein
3481_ssr6026-sacB ATGCACCACGACACCAAAGAAGCGA… hypothetical protein
3545_slr6090-sacB ATGAAGCATTATAAAACTTCACACG… hypothetical protein
3355_sll5032-sacB ATGAACTCAGAAAATCTCGCGGCTC… DUF4079 domain-containing protein
3419_ssl5096-sacB ATGATGACTAATTTTATTGATCTTG… hypothetical protein
3229_slr7061-sacB ATGAAAATCATCTCTTTTCTCGGTT… TIGR02221 family CRISPR-associated protein
3293_sll8019-sacB GTGCTAACGACCAAGCATCTGCCCC… hypothetical protein
3103_slr0456-sacB ATGGAAGATTGGGAGAAAAACCTCT… hypothetical protein
3167_slr0610-sacB GTGGGCAGTGTGGTGAATCTAGGGG… ABC transporter permease
2977_ssr1114-sacB ATGATGAGAGCTTTTGAGGTAATGG… hypothetical protein
2789_slr0712-sacB ATGACCGCCTGGCAAAAGATACAAA… UPF0104 family protein
2537_sll0539-sacB ATGATGGAACTCAATTTTTTCCTTC… DUF4105 domain-containing protein
2601_slr0498-sacB ATGTTTGGCAAATATCGACAGAAAA… two pore domain potassium channel family protein
2411_slr0416-sacB ATGGAAGAATTGTTAGAACTGAAAA… DUF29 family protein
2475_sll0887-sacB ATGCTCGATATTCAGGCGATCGCCG… TldD/PmbA family protein
2159_sll0762-sacB ATGGTACTGAAACTGAAACGGGGGA… No conserved domains found in itself, however some matches have a DUF4340 domain
2097_sll0162-codA ATGGGCTTGTTTGACGATGTCGGCC… TIGR04376 family protein
0171_sll1041-sacB ATGAGTGAACCAGTCCAGCCCATTA… ABC transporter
0235_ssr2998-sacB ATGACGATTGAAATAGGTCAAAAAG… DUF2862 domain-containing protein
1971_slr0147-sacB ATGGCTCGAAGGTATGGTTCAAGCC… hypothetical protein
1781_slr1677-sacB GTGACCACCTGGGTTCGTCCTGTTG… hypothetical protein
1845_slr0957-sacB ATGACAGCAAACAAATCCCATTACC… DUF1816 domain-containing protein
1655_ssl2717-sacB ATGGAAAAAATTTGGGTCAATGAAC… hypothetical protein
1719_sll1446-sacB ATGGAAACTGAGCAACTTCTTTGGC… hypothetical protein
1403_sll1983-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
1467_sll1998-sacB ATGGCTTACAGTTTAGATTTGAGGC… transposase
1277_slr1261-sacB ATGGCTAGCTCAACCCAAACCAATG… DUF2892 domain-containing protein
1151_sll1710-sacB ATGATAATTCGAGAATTTTACAGCA… transposase
1089_slr1870-sacB ATGCCGCAATCGGAATCAAACATTG… NYN domain-containing protein
0647_ssr2843-sacB ATGGCCCGCAAGCAAAAATTTCCCC… Cyanobacterial Signature Protein
0521_slr2037-sacB GTGCGATTCAACGATTCTGAGCTTC… hypothetical protein
0585_sll0992-sacB ATGGAACGATTAGAACACCACGCCA… esterase
0459_slr1052-sacB ATGGGATCCGAGTATCAAGGCCAAT… tetratricopeptide repeat protein
0333_slr1617-sacB ATGAAAATACGTTGGATTACACCAC… NAD(P)-dependent oxidoreductase
3513_slr6058-sacB ATGAGACGTTATCGTTATCGATCGC… CAP domain-containing protein
3387_ssl5064-sacB ATGAAAGATAACCGGTATTCTCCTG… HNH endonuclease
3451_sll5128-sacB ATGACGACTCAATCTCTCACTGCTG… hypothetical protein
3325_sll5002-sacB ATGCCTGACATTCAAACTTGGGAAT… hypothetical protein
3135_sll0577-sacB ATGCTGAAAGTGTTTCGTCAGTCCT… pentapeptide repeat-containing protein
3199_sll7031-sacB ATGACCCAGATCACCAAGTCCAAAG… DUF1778 domain-containing protein
3009_slr1579-sacB GTGAAACCCCGTTCTTTTTTCGTTC… DUF3352 domain-containing protein
2883_slr0929-sacB ATGATTATTGCCATCACTGCCCTCA… ParA family protein
2821_sll0038-sacB ATGACAGCTCCCACCCCCTCCTCCC… response regulator PatA subfamily
2443_slr0192-sacB ATGACTTCCATGCCCATCGAAATTT… hypothetical protein
2317_slr0058-sacB ATGGTTTTTGCTATGGTTGACGAGA… hypothetical protein
2127_slr0374-codA ATGCAAGAAGAGCTGAGTGTACTGC… cell division cycle protein
2191_slr0348-sacB ATGGATACCAAAGCTTTTAAACGGT… 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
2065_sll0297-codA ATGAAGCCCCCCACTTACAACGCAC… NYN domain-containing protein
1875_sll1528-sacB ATGAAGGTATTAATCACAGATTTTG… glycosyltransferase
0077_sll1049-sacB GTGTCTATGGTTGTCGATTCTGTGC… transglutaminase family protein
0203_sll1686-sacB ATGTTAGTCACCGACTCTCTTTTGC… TM0106 family RecB-like putative nuclease
1749_slr1160-sacB ATGCTTCAACGTCTTGTGCACATAT… Cyanobacterial Signature Protein
1497_slr1324-sacB GTGGAAGTAGAATACAGTGGAGTGT… hybrid sensory kinase
1435_slr1506-sacB ATGGAGAAAAAAATAACTTTACGTT… alpha/beta hydrolase
1245_sll1164-sacB ATGAAACATGTTTTTTCTGGCTTTC… EamA family transporter
1309_slr1999-sacB ATGAAGGTTAAAGTAATCCTCAAAA… type II toxin-antitoxin system HicA family toxin
1119_sll1757-sacB ATGGGGGGAAAGTGCTTAGCTAAGA… hypothetical protein
0993_slr1357-sacB ATGGCTTACAGTTTAGATTTGAGGC… transposase
1057_sll1308-sacB ATGCCCATGGCCATCGATATTAGCA… SDR family oxidoreductase
0679_ssr3410-sacB ATGATCACCACCATCATTAACTGGC… hypothetical protein
0617_ssr2318-sacB ATGAAGAGTTACCGGCGCTTGAAAC… hypothetical protein
0301_slr0971-sacB ATGAAGCTGGTGAAGGATGTACAAC… DUF4335 domain-containing protein
0365_sll1024-sacB GTGCTAGTGTGTATGGCCTTTTCCC… hypothetical protein
3482_ssr6027-sacB ATGTATTTTGACCGTTTCGACATTG… hypothetical protein