Plasmids and Cultures

This database contains entries for 3,572 known and predicted gene coding sequences in Synechocystis sp PCC 6803 based on the Kazusa genome sequence and nomenclature (http://genome.microbedb.jp/cyanobase/GCA_000009725.1). Plasmids for generating marked mutants and mutant strains can be searched for by gene Name/Accession (e.g. 'sll1226' or '1513_sll1226-sacB'),  gene homology (e.g. 'hydrogenase large subunit'), Gene ID (e.g. hoxH), or by a portion of the gene coding sequence Sequence (CDS).

Please note, the library is still being completed. Plasmids and/or marked mutants may not be available. Users can also search for available materials by Plasmids made or Mutant made.

Plasmids, mutants and the unmarking spacer plasmid pUC19K-UL are currently available on request. Regardless of the segregation status of the mutant, open reception of a cyanobacterial mutant strain we recommend 1-2 cycles of restreaking on a selection plate containing kanamycin (100 μg/ml).

Name CDS Gene Homology Gene ID Sort descending
3219_ssl7051-sacB GTGTTCGGAGGGGGCAACCATCTAT… hypothetical protein
3029_slr1588-sacB ATGAGTACTATTTTAGTTGTCGAGG… regulatory components of sensory transduction system
3093_sll0443-sacB GTGAAAAGCTGGATTTTGTTCTCTT… hypothetical protein
2903_slr0552-sacB ATGTCCACTGTAATTCCTACCTCCC… hypothetical protein
2967_slr0658-sacB ATGACCAGAAATGTCCAGTTTGAAA… toll/interleukin-1 receptor domain-containing protein
2777_sll0670-sacB ATGTTATGGCCCCTTGTTCGATATT… L%2CD-transpeptidase
2841_sll0518-sacB GTGACAAGGGCATTTTTGCTTGGCT… hypothetical protein
2651_ssr1041-sacB ATGGCAGTAACGATACACTTTTTGC… (2Fe-2S)-binding protein
2715_slr0314-sacB ATGCCTTACGTTACTGTTGGTCAAG… bromoperoxidase, alpha/beta hydrolase
2525_slr0573-sacB ATGATTTTTATGAAATACAAAGCTG… CYTH domain-containing protein, site-specific integrase
2399_sll0602-sacB GTGCCGACTGTCCACTGCTCCAACT… serine/threonine-protein phosphatase
2463_slr0208-sacB ATGTCGGTGGTGTTGACGGTCGGCG… peptidylprolyl isomerase
2273_sll0415-sacB ATGCGTTTTCGATGTTACTTAATAT… ABC transporter
2337_sll0462-sacB ATGGCAGGGGAGGAAAATACCATGA… AI-2E family transporter
2147_slr0773-codA ATGTATATTCTCATTGGTGGCATGG… TrkA family potassium uptake protein
2211_sll0022-sacB ATGGAACCAAATCATTTCCCCGGTA… DUF1190 domain-containing protein
2021_sll1851-sacB ATGCGTTATGACAATGGTTGCATTG… hypothetical protein
2085_ssl0312-sacB ATGAGTAACTTAGAACAAATTGAAA… hypothetical protein
1895_ssr0756-sacB ATGACCATCAATGGTTTGCAGGTTC… PIN superfamily domain
1959_ssr0657-sacB ATGATTCCCTTTGCTTCCCAAACCT… hypothetical protein
1769_sll1086-sacB ATGTTACTTTTCCTACTTCCAGGCA… hypothetical protein
1833_sll0912-sacB ATGGCTCTCATCACTGTTCAATCCC… ABC transporter ATP-binding protein
1643_sll1873-sacB ATGTTAAAAAAATTGTTTGGCGCTA… hypothetical protein
1708_slr1282-sacB ATGGCTTACGATCTTGATTTACGTA… transposase
1518_sll1222-sacB ATGAATGTTTTAACTGCTCCCATCA… Uma2 family endonuclease
1582_sll1252-sacB ATGTTACCAAGAGAAGCTTTGTTAA… photosystem II S4 domain protein
1456_slr1522-sacB GTGAGAAGCTTTGAATACTTGCATC… transposase
1266_ssr2087-sacB ATGTTTGGCGTTCTGCTGTTCCTTA… Cyanobacterial Signature Protein
1330_slr1718-sacB GTGGAAATCTTTGTTTATCACACGC… 2-phosphosulfolactate phosphatase family protein
1140_sll2007-sacB ATGAGTAAGAGCTATATTTCCCCAT… HNH endonuclease
1204_slr1742-sacB ATGGAATTAACAATCGGCTGGCTTT… hypothetical protein
1014_sll0877-sacB ATGAAACCAACTGGTTGGAACCAAT… hypothetical protein
1078_slr1862-sacB ATGGCGATGTTACCTCTGCCAAACT… hypothetical protein
0888_slr1542-sacB ATGACTGCTCTACGCATCGGCAACG… 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase
0636_slr1396-sacB ATGAAAAAACCAGATATTGATGTGT… hypothetical protein
0700_sll1912-sacB ATGAAGGTCGTCCTAGATACAAACC… putative toxin-antitoxin system toxin component%2C PIN family
0574_sll0997-sacB ATGGCCCCGAAAAATTCCTGCCACA… hypothetical protein
0384_slr0681-sacB GTGGTCTGCTCTATAGTGACGGCGA… calcium/sodium antiporter
0448_slr1042-sacB ATGATGGAAAATAAACCAGGCAGGA… CheY subfamily
0258_slr1290-sacB ATGATTGCTCACTCCCCATCTGCCC… Uma2 family endonuclease
0006_sll1213-sacB ATGCTTTCCCTAGAAAATCAACGTA… GDP-L-fucose synthase
0070_sll1054-sacB ATGATTGCCCCAGATTCATCCCCTC… NUDIX hydrolase
3502_slr6047-sacB ATGTCTTCAATCTATGACAATTGTG… helicase
3566_cpc-operon-codA cpcBAC1C2D
3376_slr5053-sacB ATGGTGGCGATCGCCAAACTTAGTG… cyanoexosortase A system-associated protein
3440_ssr5117-sacB ATGGGTACTTTAACGATACGGATGC… toxin-antitoxin system HicB family antitoxin
3250_slr7082-sacB GTGGCTACCATTTCCCAACAAATTA… hypothetical protein
3314_sll8040-sacB ATGGAAATACTTACACGGTACAACT… HNH endonuclease
3124_slr1186-sacB ATGTGGATTAGTGCCACCGTTGCGT… DUF2214 family protein
3188_ssl7020-sacB GTGTTTCAGTCCCGATCGCCGGGAT… No conserved domains
2998_slr1568-sacB ATGAAACCTGAATTTGCCACTGTCC… hypothetical protein
3062_sll1549-sacB ATGAAATGGGCTAACCGGTTGCTAT… histidine phosphatase family protein
2872_sll0497-sacB ATGACCATGGCTAACTGGGAAAACT… DUF3598 family protein
2936_slr1431-sacB ATGATCCCACTGCTTTCCCCCATGA… DUF3370 domain-containing protein
2746_sll0786-sacB GTGCGAAATGTGGCGCTTGTTCAGC… GNAT family N-acetyltransferase
2810_sll0048-sacB ATGTTCACCACCACTTCCTTTCCTG… diguanylate cyclase, photosystem II reaction center protein Ycf12
2494_slr0913-sacB ATGAATAAGTTGCCAAAAATCACCA… hypothetical protein
2558_slr0841-sacB ATGCGCCTGAACTTTTCCCGGACTT… delta-aminolevulinic acid dehydratase, META domain-containing protein
2368_sll0685-sacB GTGAAAACTACCCGCTCCTTTTTAA… thioredoxin family protein
2116_sll0350-codA ATGCCCCCTATTGTTTCCCCTCCCC… Cyanobacterial Signature Protein
2180_sll0325-sacB ATGCTCGCTAAATATTTTTCTGAAC… hypothetical protein
1864_sll1534-sacB ATGCGGTACGCCCTAGTCCACGAGT… glycosyltransferase family 4 protein
1928_slr0284-sacB ATGTTACAACTACTTATCGTCTGGA… phage holin family protein
1738_ssl2162-sacB ATGCAATCCTCACAGACCTGGGCGA… hypothetical protein
1676_sll1377-sacB ATGCCCCAATTTCCGTGGAAAGATA… glycosyltransferase family 2 protein
1550_sll0809-sacB ATGGCCTTGGATCAATGGTTATTGG… lipoate--protein ligase family protein
1424_sll1429-sacB ATGATATTAGTTCTTCCTTGGTTAA… restriction endonuclease
1488_sll1995-sacB ATGCTTGAAGCACCTTTGTTAAGTA… glycosyltransferase family 2 protein
1362_slr0262-sacB ATGGCTAATGAGGTCGTTAAAGCTA… hypothetical protein
1236_sll0837-sacB ATGGAAAAATTTACTGTGTCAAAAC… tetratricopeptide repeat protein
1046_sll0862-sacB ATGCCCACTACCCTAGACCAGTTTT… site-2 protease family protein
1110_sll1762-sacB ATGATTTGTTCTGCTACCCCCGATC… amino acid ABC transporter substrate-binding protein
0984_slr1449-sacB GTGACAATGAATCCTCTCCCATTAC… cytochrome b
0794_sll1119-sacB ATGCCCCCCCTGCAACTACTCCGAT… phosphotransferase enzyme family protein
0858_sll1730-sacB ATGATCTCCATAGATAAAAGTTATG… hypothetical protein
0668_sll1568-sacB GTGCCCAATAGTATGGATGCCAATA… fibrillin
0542_sll1934-sacB ATGAATGCGGCAGAACAAGCCATTG… hypothetical protein
0606_slr1378-sacB ATGGGAAAGTCCAGCCATTTCCCCC… Uma2 family endonuclease
0416_sll1515-sacB ATGCAATTAAGTTACCGTGGAGTCA… DUF4278 domain-containing protein
0290_sll0943-sacB ATGTTAAAAATTCTGCAAAAATTAC… hypothetical protein
0038_ssl2733-sacB ATGAACTACAGAAACTACATTACGA… DUF433 domain-containing protein
0164_slr1413-sacB GTGGCTGATTCTGATCATTATCCAA… DUF697 domain-containing protein
0102_sll0703-sacB ATGTACCAGCTAGTGATTATCGGGG… NAD(P)/FAD-dependent oxidoreductase
0228_sll1672-sacB ATGCAAATCAATAACCATGTTTTCA… hybrid sensory kinase
3534_ssr6079-sacB ATGTTTTTGTTTTTGATTTTAAGGA… hypothetical protein
3408_slr5085-sacB ATGACACTCCCTGCAATTATGAAAT… hypothetical protein
3472_sll6017-sacB ATGTTCGATAATCTGTGCAAATTTC… Rpn family recombination-promoting nuclease/putative transposase
3282_ssl8008-sacB ATGGTGACCACAGCCAGAGTAATGC… DUF433 domain-containing protein
3346_slr5023-sacB ATGAAAATTGTTTCTATAAAAATAA… chromosome segregation protein SMC
3156_slr0600-sacB GTGAAATTATCCAGCAAAAATTTAG… NAD(P)/FAD-dependent oxidoreductase
3220_slr7052-sacB ATGGTTGCCCCCTCCGAACACCAGA… hypothetical protein
2904_slr0553-sacB ATGGACACCAAGCCCCCTCGACAAC… dephospho-CoA kinase
2778_sll0669-sacB ATGGCTGCCGATGTGCAATATTTTC… hypothetical protein
2652_sll0588-sacB ATGTCATTATTCCCTCTTTTAACCG… hypothetical protein
2716_slr0315-sacB ATGTTAAATATAGAAAATAAAGTAA… SDR family oxidoreductase
2526_sgl0001-sacB GTGGAATTAACCTACACTGGTGAAA… CYTH-like phosphotase domains
2400_slr0645-sacB ATGAGCGCTGAAGCTGTCATCGAAA… VWA domain-containing protein
2274_sll0414-sacB ATGGTAGACAATAATCAAGCCCAGG… pentapeptide repeat-containing protein
2148_sll0772-codA ATGGGCTTAATTTGCGGTTTGGCGA… hypothetical protein
2212_slr0001-sacB GTGCTAGACGAACAAGCAAAGAAAA… flavin reductase family protein
2022_slr1936-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
2086_sll0175-sacB ATGTTACGCATTAGTGAAATCAAAC… NAD(P)/FAD-dependent oxidoreductase
1896_ssr0759-sacB GTGTTTGTAACCAGAGTAGCTCTCA… hypothetical protein
1770_slr1173-sacB ATGGATAAAGCCATTCGGAAAATTT… DUF2330 domain-containing protein
1835_slr0950-sacB ATGGCCAAAGCAGATAAACAACGAC… TlyA family RNA methyltransferase
1645_sll1871-sacB ATGGTCTCAATTATTAAGTCGGTGC… sensory transduction histidine kinase
1709_slr1283-sacB ATGTACGATACTAAAAGTCCAGTAT… transposase
1583_slr1344-sacB ATGCGCCTATGGTTTCGTCCCCCCT… ABC transporter permease
1457_slr1523-sacB ATGACAGCTTACTTGCGAGAGCAAG… transposase
1267_sll1150-sacB GTGATTATCCTAGTCAAAAATCCAC… membrane protein
1141_sll2006-sacB ATGCAAATTACTCTAGACATCCCCG… hypothetical protein
1079_sll1780-sacB ATGATATCAAATTTTGGACATATTG… transposase
0889_slr1543-sacB GTGAATTTTGACCGCATTTTTGCTT… DNA-damage-inducible protein: MATE family efflux transporter
0953_ssr2060-sacB GTGGTAGGATTAGGCGAAAATAATC… 2-hydroxy-6-oxohepta-24-dienoate hydrolase
0827_sll1967-sacB ATGACCCAAAGTAATAATTTCGCCA… RNA methyltransferase
0637_slr1397-sacB ATGGATAATCTAACCGACTTTGCAT… hypothetical protein
0701_ssl3615-sacB ATGAGCACCATCGAGCAAGTTCTCA… hypothetical protein
0511_sll1945-sacB ATGCACATCAGCGAACTGACCCACC… 1-deoxy-D-xylulose-5-phosphate synthase
0449_slr1043-sacB GTGGGGAAATCTATGGTTAGTTCTA… hypothetical protein
0259_sll1201-sacB ATGTTTGACAATCTCTGCAAATTCC… Rpn family recombination-promoting nuclease/putative transposase
0071_sll1053-sacB ATGACTGAGCCACCCGTACTGCACG… efflux RND transporter periplasmic adaptor subunit
3503_ssr6048-sacB ATGACAATAACAACACAAGCTCAAA… hypothetical protein
3377_slr5054-sacB ATGGAAGATTTAGGAATTGTCGTTA… glycosyltransferase
3441_slr5118-sacB ATGTTTGACAATCTCTGCAAATTCC… Rpn family recombination-promoting nuclease/putative transposase
3251_slr7083-sacB ATGACAAGTCAAAATTTTGTTTCTG… hypothetical protein
3315_ssl8041-sacB ATGAAATTATCCGTTCTTACTGTGG… transposase
3125_slr1187-sacB ATGACTGACTACTCCGCCCTTGATA… hypothetical protein
3189_ssl7021-sacB GTGTGGGAGGGACTAGTTTCAGTCC… No conserved domains
2873_slr0545-sacB ATGGAAACTATTCGCCTTGGCCCCA… aldo/keto reductase auxin-induced protein
2937_sll1330-sacB GTGAATCCAGTCTACATATCAGTCG… response regulator transcription factor
2747_sll0785-sacB ATGAATAAGCAACGTCTCATCACAG… MSMEG_0568 family radical SAM protein
2811_sll0047-sacB GTGAGATTACAACAAGCGCCACATC… conserved domain for photosystem II reaction center protein Ycf12
2685_slr0116-sacB ATGGCCGTCACTGATTTAAGTTTGA… phycocyanobilin:ferredoxin oxidoreductase
2495_slr0914-sacB ATGATTAACTTTTCCGAAAACAGGA… hypothetical protein
2559_slr0842-sacB ATGAATCCCTCCAATGCCCAACTTA… EAL domain-containing protein
2433_ssl0738-sacB ATGAAAGCTGAACTAACTGCAATTA… type II toxin-antitoxin system HicB family antitoxin
2243_slr0214-sacB ATGGCCAGACCCATTGCCATCGACT… cytosine-specific methyltransferase
2307_sll0066-codA ATGGCTGATCGATTTTCTCCATCAG… hypothetical protein
1929_slr0285-sacB ATGGTAAAAGAAAATTCAGCAGAAT… radical SAM protein
1803_sll1556-sacB ATGGATAGCACCCCCCACCGTAAGT… Hydroxyacid reductase
1613_slr1966-sacB ATGATTGACCGCGAATTTTTGCTTG… glycoside hydrolase
1677_slr1478-sacB ATGGATTTTCGTCGCTGGATTGCCC… stage II sporulation protein M
1425_ssl2789-sacB GTGGGGCAGTTTGAAAGAGAGATGA… resolvase; recombinase family protein
1363_slr0263-sacB ATGCGGGTAGAGAATATTACCCAAG… hypothetical protein
1237_slr0867-sacB GTGCGTTTATTGTATCTAGCCCGAC… hypothetical protein
0921_slr1752-sacB ATGGTTCAAACTGCCCTACTTCCCC… Uma2 family endonuclease
0985_slr1450-sacB ATGTTCAACTTTTTTGTCAGACTGT… hypothetical protein
0795_slr1194-sacB ATGGCCAATCGTACCCAAAGTCGTT… DUF533 domain-containing protein
0669_sll1927-sacB GTGGCGAATCTTAGGACACATTTTG… ABC transporter
0543_slr2053-sacB GTGAAAATTTCCGAACAGACCCTTG… alpha/beta fold hydrolase
0417_slr1597-sacB ATGGCCAAAATCATTAGCACCGTCA… ParA family protein
0481_sll1643-sacB GTGGATAAAGCCCAATTACGAGCCC… 5-formyltetrahydrofolate cyclo-ligase
0355_slr1079-sacB ATGGCAAGTTTTCTGGCTTTACTGC… transcription termination factor Rho; Provisional
0039_sll1399-sacB GTGACGATGCGGCAGTCCCTTTCCC… DUF4336 domain-containing protein
0103_sll0702-sacB ATGGCCATCGTTATCAATTACCGTT… hypothetical protein
0229_sll1671-sacB GTGAACACCATCCATCTACGCCCAT… GNAT family N-acetyltransferase
3535_slr6080-sacB ATGTTTAAAAAATTAGGTGAAGTAG… hypothetical protein
3409_sll5086-sacB ATGACAACCTCGCCTAATCAGACCC… GntR family transcriptional regulatory protein
3283_sll8009-sacB GTGCAAGACATAGATGGTAACGAGG… type I restriction-modification system M subunit
3347_slr5024-sacB ATGAGTTACGACTTAATTTTTCTTC… DUF4276 family protein
3157_slr0601-sacB ATGTCCACGGAAAACCCCATCGAAA… hypothetical protein
3221_ssl7053-sacB ATGTTGGAAGAAACGATCGCCGTAA… hypothetical protein
3095_sll0442-sacB ATGGCTCTAATAGCAAGACTGATCG… hypothetical protein
2905_slr0554-sacB GTGTTTTGCCCCTACAATGAGACTC… DUF3854 domain-containing protein
2717_slr0316-sacB ATGGCAATTCTGAAACAATTAGGGA… CPBP family intramembrane metalloprotease
2527_ssl1045-sacB GTGGCCATCGAGATTGAACATAAAT… CYTH-like phosphotase domains
2465_slr0209-sacB ATGGCTAGATCAAACAAGGACGATA… hypothetical protein
2275_slr0431-codA/sacB GTGCGACCAAAATTTTTTTCTAGGA… SIMPL domain-containing protein
2213_sll0021-codA ATGTTAAAAGTCCTGCATCTTTCTG… exonuclease SbcCD subunit D
2023_slr1937-sacB ATGTTAAGAGAACTAATTAAGCTCT… transposase
2087_sll0174-codA ATGAATTTATTTCGGAAATGTTTAC… ABC transporter substrate-binding protein
1897_ssr0761-sacB ATGGGGGAAACTTTGCCCCAACAAT… type II toxin-antitoxin system prevent-host-death family antitoxin
1961_sll0355-sacB ATGCAAATTGAATCAAAAACAAATA… DMT family transporter, IS1 family transposase
1771_ssr1951-sacB ATGGATCCCTTAACCAAATTAGTTT… Hypothetical protein
1962_sll0354-sacB ATGGCTACTGAACTACTTTTTAATC… DUF4281, DUF2442 domain-containing protein
1772_slr1174-sacB ATGGGTCATTTTCCCCACAAACTGC… multidrug ABC transporter permease
1836_sll0911-sacB ATGAATATTCAAGAAATTCAAACTA… hypothetical protein
1646_slr1982-sacB ATGGAATCTATGGCTAAGGTTCTCC… response regulator
1710_sll1170-sacB ATGTCCTCCTATCTTGTCAACGAAA… diguanylate cyclase
1584_sll1251-sacB ATGCCCTCCCACCCATCCCGCAGTA… Uma2 family endonuclease
1458_slr1524-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
1268_slr1253-sacB GTGTATTGTTCCATTGTCAGACCAG… hypothetical protein
1080_slr1863-sacB GTGATCGCCGATTTAAATACGGTTA… hypothetical protein
0638_slr1398-sacB GTGCGTCGCCCAATACAAATTCATC… hypothetical protein
0702_sll1911-sacB ATGGCCGGATTATTTGGCTTATTTG… hypothetical protein
0386_sll0651-sacB ATGTTAAGAGAACTAATCAAGCTCT… transposase
3504_slr6049-sacB GTGAGGATGATTAAAGTTTTGGTAG… PIN domain-containing protein
3378_slr5055-sacB ATGAATTCCATCACGCTTCTCAACA… glycosyltransferase
3442_slr5119-sacB ATGTTTGACAATCTGTGCAAATTTC… Rpn family recombination-promoting nuclease/putative transposase
3252_ssr7084-sacB ATGGCATCCCTTGTTGAAATCAAAG… hypothetical protein
3316_sll8042-sacB ATGTTAAGAGAACTAATTAAGCTCT… transposase
3190_ssl7022-sacB ATGGCTGATTCTCAAATAGCTGTTT… No conserved domains
3000_sll1488-sacB ATGAACTCTTTCTGGCGAACTTGTC… M23 family metallopeptidase
2874_sll0496-sacB GTGATGTTCTTGTCTAAAACCTTGA… YjgP/YjgQ family permease
2938_sll1329-sacB GTGATGATGGCCATATTGCCCTTGT… inositol monophosphatase
2812_slr0022-sacB ATGGCAACTTGGTATTGCATGCAGG… YkgJ family cysteine cluster protein
2622_sll0477-sacB GTGCTGGATAATTGCAAGAGATTAT… MotA/TolQ/ExbB proton channel family protein
2686_ssl0172-sacB ATGACTCGAATACCAGATATTAAAT… transposase
2496_slr0915-sacB ATGAGCACTAAGCTTAAGGGTGACA… putative endonuclease
2434_sll0371-sacB ATGACTTTAACAAGCGAGTCACTTC… hypothetical protein