Plasmids and Cultures

This database contains entries for 3,572 known and predicted gene coding sequences in Synechocystis sp PCC 6803 based on the Kazusa genome sequence and nomenclature (http://genome.microbedb.jp/cyanobase/GCA_000009725.1). Plasmids for generating marked mutants and mutant strains can be searched for by gene Name/Accession (e.g. 'sll1226' or '1513_sll1226-sacB'),  gene homology (e.g. 'hydrogenase large subunit'), Gene ID (e.g. hoxH), or by a portion of the gene coding sequence Sequence (CDS).

Please note, the library is still being completed. Plasmids and/or marked mutants may not be available. Users can also search for available materials by Plasmids made or Mutant made.

Plasmids, mutants and the unmarking spacer plasmid pUC19K-UL are currently available on request. Regardless of the segregation status of the mutant, open reception of a cyanobacterial mutant strain we recommend 1-2 cycles of restreaking on a selection plate containing kanamycin (100 μg/ml).

Name CDS Gene Homology Gene ID Sort descending
0179_slr1098-sacB GTGAGAAAATATGGAGCTATGCGTA… HEAT repeat domain-containing protein
2393_sll0608-sacB GTGAATGCTCTCTCAATTCCCACTT… Ycf49-like protein
0243_sll1664-sacB ATGTTTTTCAGTGTTGTCATTCCCA… glycosyltransferase
2457_sll0181-sacB ATGAATATAAATAAAGGCAAAGTAA… hypothetical protein
2267_slr0231-codA ATGTTATTCCAAAGATTTTTGGACT… DNA-3-methyladenine glycosylase 2 family protein
2331_slr0069-sacB ATGACTTCCCCACCAACTCCAGACC… hypothetical protein
2015_sll1858-sacB ATGTCTAGTTCCCGTGGCCCCTATA… hypothetical protein
2079_slr0168-sacB ATGACTATTCAATACACCCCCCTAG… hypothetical protein
1889_slr1649-sacB ATGTCCCATTCCACTGATCTTTCCG… chromophore lyase CpcT/CpeT
1763_slr1168-sacB ATGTTAACCGTTACTAATTATCCCC… DUF433 domain-containing protein
1827_slr0944-sacB ATGGTCAATCGCATTAACCCCAAAG… transporter
1637_slr1978-sacB ATGGACTTGATGCGGTCTTTACCCA… hypothetical protein
1701_sll1174-sacB ATGCGCGTTGAACCCTGTTGCCAAG… FkbM family methyltransferase
1575_slr1339-sacB ATGCTATTGAGGATTGAAACCAGAT… hypothetical protein
1385_sll0238-sacB ATGCGATCGCCAACTAGCTTTGGGG… iron ABC transporter permease
1323_slr1715-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
1197_slr1737-sacB ATGAAATTTCCGCCCCACAGTGGTT… hypothetical protein
0881_sll1469-sacB GTGATGACTGAGCAGAAATACTTGA… GNAT family N-acetyltransferase
0945_slr1236-sacB ATGACCCCATTGACTTTTCGTAACT… DUF192 domain-containing protein
3495_slr6040-sacB ATGAGATTGTTGCTGGTGGAGGATG… two-component response regulator
3559_slr6104-sacB ATGAAAAATATTATTATCTCAAATT… hypothetical protein
3369_sll5046-sacB ATGAACACTTCTTTCCTCGAATCCC… sulfotransferase
3433_slr5110-sacB ATGCTCTTGAGGGAGCAACCTTTTA… XRE family transcriptional regulator
3243_sll7075-sacB ATGAGCATTTTACGATACGAAGAAA… hypothetical protein
3307_sll8033-sacB ATGCGAGCCTTACCTTCTTTCCCCA… hypothetical protein
3117_sll1109-sacB ATGTCTGCTTATCTGTTTAATCAAG… Cyanobacterial Signature Protein
3055_sll0721-sacB GTGGAGGGTTTCAAAATGGGGAAAA… leukotoxin; LtA
2865_sll0501-sacB ATGACCATTGAACTGTCTATTGTGA… glycosyltransferase
2803_sll0743-sacB ATGACTTTAAAAATCAATGCCAATC… DUF29 domain-containing protein
2613_sll0482-sacB ATGCCAATGGCGCTTTGGGGCATCG… DUF2974 domain-containing protein
0463_slr1056-sacB ATGGAATTAAAAAGTGTTAAATTAA… ATP-dependent endonuclease
2677_sll0096-sacB GTGATTTTAGTTGTGGGCGCCACCG… NAD-dependent epimerase/dehydratase family protein
2487_ssr1528-sacB ATGGCTAATACAACTAAAGGAGCCG… DUF4090 family protein
0337_slr1063-sacB ATGTCCAAAAATGACAAGCCATTAG… glycosyltransferase
2551_ssl1552-sacB ATGGTTTTCCCTTCCCCCAATGGTG… hypothetical protein
0147_slr0254-sacB ATGGCCCTGTTTAACCATTATCAGG… RDD family protein
2361_sll0691-sacB ATGGGCGCATCTTTTCGGGCAGAAC… low-complexity tail membrane protein
2425_slr0421-sacB ATGAGCCAATCACCAATTCTGTTTT… alpha/beta hydrolase
2235_sll0008-sacB ATGGTGTCAATATTTCATCAATTGG… hypothetical protein
2299_slr0050-sacB GTGGAAATTACTTTTCTTGGTACCA… ribonuclease Z
2110_sll0154-codA ATGAGCCATAGCCGCTTTAAGTCCG… YvcK family protein
2174_slr0782-sacB GTGGTGATACGATCAGGCAAAACTA… amine oxidase
2048_ssl1807-sacB ATGAATTTTTACTGGCCCCGTTTTG… hypothetical protein
1922_sll0266-sacB ATGTGTACTATGACTGCTGTGATTA… hypothetical protein
1796_slr1684-sacB ATGACTCGAATACCAGATATTAAAT… transposase
1544_sll0812-sacB ATGGGTTCCCCAGAATTTTCTCCTA… hypothetical protein
1608_slr1962-sacB ATGAAACGCCGTCAACTCCTTGGCC… C4-dicarboxylate ABC transporter
1482_slr2123-sacB ATGAAATGGAAAGTTTTAGTAACCT… D-isomer specific 2-hydroxyacid dehydrogenase family
1292_slr2062-sacB ATGAAGCTAAGGTATCAGTACCGAT… transposase
1356_sll0254-sacB ATGACTGAATTACCCCCCAATCCTA… FAD-dependent oxidoreductase
1166_slr1812-sacB ATGGTTGCTGAACTCCGCAAAACAA… DUF29 domain-containing protein
1230_sll0843-sacB ATGAAGCTAGCATTTTTTCAAAAAT… hypothetical protein
1040_ssr1499-sacB ATGGACGTGTTACTCGATCGCCTAA… hypothetical protein
0978_slr1444-sacB ATGGAAACAACACATAGCTTTGGCG… CHAD domain-containing protein
3528_slr6073-sacB ATGAGTTTACCAACTGAATTGATTG… hypothetical protein
3402_sll5079-sacB ATGATTCTCGTCAGTTTGTATCCGT… glucose 1-dehydrogenase
3466_slr6011-sacB ATGATTACTGCTTGCAGTCAGGAGC… thermonuclease family protein
3276_sll8002-sacB ATGACCGTTCCCGCTCAGCCTAAGA… DUF4433 domain-containing protein
3340_slr5017-sacB ATGCTCTCAGTAACTCACCTCAAAA… DNA polymerase subunit beta
3150_slr0596-sacB ATGCGACCTTCCGCCCTTATTCCCC… creatinine amidohydrolase
3214_ssl7046-sacB ATGCAGGTGCTTACCTACCTCAAGT… putative toxin-antitoxin system toxin component%2C PIN family
0810_slr1207-sacB GTGCCCATGGCCATGCCCCTTGTCC… HlyD family efflux transporter periplasmic adaptor subunit
3088_sll0448-sacB ATGAATAGACTGAGAAATTTTGCAA… hypothetical protein
0558_slr1914-sacB GTGATGGTAGGTTCGGGGCAATGTG… hypothetical protein
2772_smr0002-sacB ATGTTAAGAGAACTAATTAAGCTCT… transposase
2836_slr0042-sacB ATGAAACAATATCGATTCACTTGGC… Cyanobacterial Signature Protein
2646_ssr1038-sacB ATGAATACCACATCTCCCATTGACT… hypothetical protein
0496_sll1635-sacB ATGGATGTTCGTTTCATTTCCCTCA… FAD-dependent thymidylate synthase
2710_sll0281-sacB ATGGTTGCCATCGATAATAATTTGA… DUF1822 family protein
0306_sll0931-sacB ATGGCTTCCACCAAAAAGATTTTAC… tetratricopeptide repeat protein
2520_sll0545-sacB ATGGCCCTATGCTTAAAAATTGTCA… phosphatase PAP2 family protein
2584_sll0082-sacB GTGAACGAAGAGCGTTTTGCCGACA… hypothetical protein
0054_slr1117-sacB ATGAATCAGGAAAAATTATTGGCCC… class I SAM-dependent methyltransferase
0244_sll1663-sacB ATGAGTGATTCCCTCACCGCCATCA… HEAT repeat domain-containing protein
2458_ssl0350-sacB GTGAAATATACAATCGTTATTCAAT… type II toxin-antitoxin system HicA/B family antitoxin
2268_sll0192-sacB ATGTTGCCGAAGATTCTACTGCTCA… hypothetical protein
2332_sll0051-sacB ATGGTTACCGAACAAGACCGTGAGT… nucleoside deaminase
2142_slr0388-sacB ATGTGGCAATCAATTCGTTCCCTCA… ComF family protein
2206_slr0358-sacB ATGACCCCATGGACAATTTGGTTTA… hypothetical protein
2080_slr0169-sacB ATGGGCATCGAACTCCGTAGTTACG… hypothetical protein
1954_slr0400-sacB GTGCCAAAAGTCGGCATCATTTTCA… NAD(+) kinase
1764_slr1169-sacB ATGCAAGGTTTACTGCTCATTTTTT… DUF1049 domain-containing protein
1702_sll1173-sacB ATGGCCCAGGCTCTGTTGAATAACG… FkbM family methyltransferase
1576_slr1340-sacB ATGATTGACATTGTAAAAGCAGATC… GNAT family N-acetyltransferase
1386_sll0237-sacB ATGCTTTTATCAACGAGGAAACAAT… extracellular solute-binding protein
1324_slr1716-sacB ATGTTAAGAGAACTAATTAAGCTCT… transposase
1198_sll1621-sacB ATGACCCCCGAACGAGTTCCCAGTG… peroxiredoxin
1072_slr1855-sacB ATGAGTCCCAAAATTAACTTTCCTT… AGE family epimerase/isomerase
0882_slr1535-sacB ATGGTATCGATCGCCGAACGGACAA… hypothetical protein
3496_slr6041-sacB ATGCAGAACAATAGATTATTCAATC… two-component sensor histidine kinase
3560_slr6105-sacB ATGATATCAAATTTTGGACATATTG… transposase
3370_sll5047-sacB ATGACCCCCCAAGCCCAACTGGTTC… hypothetical protein
3434_slr5111-sacB GTGCAAATAAACTACTACACTGCAA… hypothetical protein
3244_slr7076-sacB ATGTCGCTGGACACGCTGGTGCCGG… HNH endonuclease
3308_sll8034-sacB ATGCTAACCACCCAAATCACCCAAA… 2-nitropropane dioxygenase
2992_slr1563-sacB GTGCCCGTGAATTCCCCAGCCCCCT… fructosamine kinase family protein
2866_slr0541-sacB ATGCAAGCTCACTTTTTCCAGCACG… amidotransferase
0716_sll1081-sacB ATGACTATTGCCCAGGATAAATTAT… integral membrane components of other binding-protein-dependent transport system
2930_sll1338-sacB GTGTTAAACAAATCTGTTCAGATCC… hypothetical protein
0526_slr2042-sacB ATGTTGCCCACTGCCATTGTCCTCA… zinc-dependent peptidase
0590_slr1032-sacB ATGCCCACCCCACAAGCACTGTATC… hypothetical protein
2804_sll0742-sacB ATGGTCACTCAGATGAATACCAAAA… DUF29 domain-containing protein
0400_ssr1155-sacB ATGAGTCAAACTAACTACTATCAGA… DUF2949 domain-containing protein
2614_sll0481-sacB ATGGTGCAGTCAACCGTCGAACTTT… hypothetical protein
0464_sll1006-sacB ATGGAGGAAAATTTGGGCATGGACA… hypothetical protein
2678_sll0095-sacB ATGATGCTCATTTCGCAACCGATGG… AarF/ABC1/UbiB kinase family protein
0274_sll1191-sacB ATGCTCGATTTTTTCTGCAGTGGCA… LapA family protein
2488_slr0904-sacB ATGTTAGCAAGGGTTTGGAGTGCTT… magnesium chelatase
2236_sll0007-sacB ATGGTTTTAGCCTCAGCAAAAGTAC… Uma2 family endonuclease
2300_sll0072-sacB ATGACTAATATTCCTTACCGAGAAA… helix-turn-helix domain-containing protein
2301_sll0071-sacB ATGCGTAAACTTTACTTTTTATTAC… glycosyltransferase
1985_slr0157-sacB ATGGCTATCTCTCTAGATGAAGATA… hypothetical protein
1923_sll0265-sacB ATGGCACAAACTGTTAGTGGCTTTA… ferritin-like domain-containing protein
1797_sll1559-sacB ATGGATAATAAGCAAATGTTGATGA… Serine/glyoxylate aminotransferase, soluble hydrogenase 42 kD subunit
1671_slr1474-sacB ATGGCGAGTGGAAATAAGTTTCAGT… NlpC/P60 family protein
1735_slr1533-sacB ATGACAGCTCCCCTAACCCTCAACT… hypothetical protein
1609_sll1895-sacB ATGCTTTATCAATTGGTCGTTGATT… EAL domain-containing protein
1419_slr2103-sacB GTGCTAAGAGCGACCAGTGATCGAT… acyltransferase family protein
1483_slr2124-sacB ATGAAACCAGTTGTTCTTATCACCG… short-chain alcohol dehydrogenase family
1293_sll1951-sacB ATGGCACTAAGTCCTAACGTAATTG… hemolysin
1357_sll0253-sacB GTGAAAACTGCGATGATCCCCATTT… hypothetical protein
1167_slr1813-sacB ATGGTTGCCGAACTCCGCAAAACTA… DUF29 domain-containing protein
1041_slr0890-sacB ATGGGTTTAGTTTATGCCAATATTG… clan AA aspartic protease
0915_sll1634-sacB ATGAGCAAGGAATTTCGAGAGCTAT… hypothetical protein
0979_ssr2422-sacB ATGACTAACAATGACAATATTCGCT… thylakoid membrane protein
3529_slr6074-sacB ATGAAAATTATTGTTAAATTACAAG… hypothetical protein
3403_sll5080-sacB ATGAGCACCATCACTACCAAAGACG… non-heme chloroperoxidase
3467_slr6012-sacB ATGGACAGCCCCCGGCAATTGTCAT… hypothetical protein
3277_ssl8003-sacB ATGACCAATCAACAGGGTAATGTTA… hypothetical protein
3341_slr5018-sacB ATGAATCGTGACAACGCTTATCTGC… DUF86 domain-containing protein
3215_sll7047-sacB ATGACAAACCGAATGATAGAGACTT… DUF4386 domain-containing protein
0811_ssr2016-sacB ATGTTCGCCCCCATCGTTATCTTGG… hypothetical protein
3089_sll0447-sacB ATGGAATTTTTTAAACTTATATCAG… hypothetical protein
2963_slr0654-sacB GTGGTAATTCCAACCCTTAAGGCAC… hypothetical protein
2773_slr0704-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
0433_ssr2699-sacB GTGAAAAAGGCTGGCGCTGGACAAG… transposase
2647_slr0617-sacB ATGATTAACGGAAAGCCCCAACCTC… hypothetical protein
2711_sll0280-sacB ATGGAAAAAGATCATTGTTCCCTCG… hypothetical protein
0307_sll0930-sacB GTGGCCGACTATGCCTTCTTCGTTT… hypothetical protein
0055_sll1064-sacB ATGATTGTCACTAGTTTGTTATTAA… metallophosphoesterase family protein
0181_slr1100-sacB ATGGCAAGACGTAAAAAAACTTTTC… hypothetical protein
2395_slr0643-sacB ATGTGGCTTCTTTTGCTCATCCTTG… fbt
0119_slr0236-sacB ATGTTGTTGCTCCAATTCAGCACTT… glutathione S-transferase family protein
2459_sll0180-sacB ATGGTTAGAAAACGCTCCCAATTCC… efflux RND transporter periplasmic adaptor subunit
2269_slr0232-codA ATGGGTTGGGAATTTTTTTCGCTAG… DedA family protein
2143_slr0769-codA ATGCAGAAACAAGTCTCTCCCCTAG… L-2CD-transpeptidase
2207_sll0310-codA ATGAGTTTGAGTTACCGTATTCGTC… N-acetyltransferase
2017_slr1935-codA ATGGAATCTAAGTTGCTGAGTGCAA… MFS transporter
1955_slr0401-sacB ATGAATTTACCCTGCTATTCCCGCC… spermidine/putrescine-binding periplasmic protein
1765_slr1170-sacB GTGTCCCCACCATTGCCGCTGTTAC… TMEM165/GDT1 family protein
1639_slr1980-sacB ATGGTTAGAATCATTGCAAAAAGCC… hypothetical protein
1577_sll1255-sacB ATGATATCAAATTTTGGACATATTG… transposase
1387_ssl0438-sacB ATGGGCATGACTATAATTTTGATAT… 50S ribosomal protein L12 honologue
1451_ssr2554-sacB ATGGTTTTTATTCCTGATGAGAGCG… hypothetical protein
1325_sll1609-sacB ATGATGGTCGTTGCTACAACTAAAA… Uma2 family endonuclease
1073_slr1856-sacB ATGGATATTCAAATTAATCAACAGG… anti-sigma B factor antagonist
0947_sll1132-sacB ATGATGGGTAAATTTTTTCACTTCA… hypothetical protein
3497_slr6042-sacB ATGCAAAACCGGATCATTGTTCAGG… efflux RND transporter periplasmic adaptor subunit
3561_slr6106-sacB GTGCGATTCAACGATTCTGGGTCAG… hypothetical protein
3371_sll5048-sacB ATGAAAATCACCTTTGTTTTACCCT… glycosyltransferase
3435_slr5112-sacB TTGATTGTACAGGTTACTTCTGGTT… hypothetical protein
3245_sll7077-sacB ATGAATTTATCCCATCCTACTCCCC… bifunctional (p)ppGpp synthetase/guanosine-3'%2C5'-bis(diphosphate) 3'-pyrophosphohydrolase
3309_sll8035-sacB ATGTTTGCCAACGTGATCGCCACCC… hypothetical protein
3057_sll1552-sacB ATGTATGAACCAATTCAATTGGACA… N-acetyltransferase
0717_sll1080-sacB ATGTTATTAACAACTAGCGGAGAAA… aliphatic sulfonate ABC transporter substrate-binding protein
2931_sll1336-sacB ATGGCTGACGATATTCGCATTTTGA… TIGR00300 family protein
0527_sll1940-sacB ATGTTTAGATTATTCAATTCGGGGA… peptidase
2741_sll0788-sacB GTGGGTAATCAATTCTGGATATATG… DUF305 domain-containing protein
0591_slr1033-sacB ATGACAATACTTTTTACCAAAATTC… hypothetical protein
0401_slr0689-sacB ATGGCGACGATCGCCGAGATTAATG… hypothetical protein
2615_sll0480-sacB ATGGCCAGTATCAACGACAACTATC… LL-diaminopimelate aminotransferase
0465_sll1005-sacB ATGGATGCCACTGCCCCCATTCTCC… regulatory protein for beta-lactamase
2679_sll0094-sacB ATGGCAATCCACTATGCGTCCCTTG… sensory transduction histidine kinase
0275_ssr2153-sacB ATGAAATTACAGCATCCCAAACCCC… hypothetical protein
0339_slr1065-sacB ATGAATCCAATAGTAAAAGCTCCCA… glycosyltransferase
0023_sll1407-sacB ATGAAAAAAAATGTTTACTACAGCA… SAM-dependent methyltransferase
2363_ssl1300-sacB ATGAAAAGATCTGTAACTATGTCTT… antitoxin
0087_sll0711-sacB ATGCATTCCTACACCCTCCATGCCC… 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase
2364_sll0689-sacB ATGTTTATGAACCCATTGCTCCCTC… Na/H+ antiporter
0088_sll0710-sacB ATGTGGAACTTTTCGCAACTTAATC… hypothetical protein
0214_slr1780-sacB GTGGAAAGTTGGGCATTGACGACCC… Ycf54-like protein
2428_sll0376-sacB ATGACCCCATCAGATTATCAGGATC… hypothetical protein
2238_sll0005-codA ATGTCTCCAGCCCCCATGCCCGTTA… ABC1-like
2112_slr0359-sacB ATGGACAAGGGAGGAAAGACCTATA… EAL domain-containing protein
2176_sll0749-sacB GTGGAAAAAATCATGAGCGAACAAA… hypothetical protein
1986_sll0142-sacB ATGTCCTCCCCCAACTCCGTTTTTA… efflux RND transporter permease subunit
1924_sll0264-sacB GTGTTTGGCGGAAGTGTCAACGGAA… aromatic ring-hydroxylating dioxygenase subunit alpha
1798_slr1686-sacB ATGGCCGCCATCACCCTCACCCTCC… FHA domain-containing protein
1672_sll1381-sacB ATGGCCAATTTAGAAACCTATGTGC… hypothetical protein
1736_slr1534-sacB ATGTCTTCCCTGCCCAAAAATTTTC… LD-carboxypeptidase
1546_slr0815-sacB GTGTTTTTTTGTTGCCCATTGTTCC… DUF3007 family protein
1610_slr1963-sacB ATGCCATTCACCATTGACTCTGCCC… orange carotenoid-binding protein
1484_slr2125-sacB ATGACGAAAAACACAACCGTAGAGC… DUF115 domain-containing protein
1294_sll1950-sacB ATGTCTTCCCCCAGCCTTTCCCCCC… FkbM family methyltransferase
1168_slr1814-sacB ATGGTTGCTGAACTCCACAAAACCA… DUF29 domain-containing protein
1232_slr0864-sacB ATGCTCCGACTCGAACACATCCGCA… ABC-F family ATP-binding cassette domain-containing protein
0916_slr1748-sacB ATGGCCCTCAAACTTTATTTCCTGC… histidine phosphatase family protein
3530_slr6075-sacB ATGACCAGACTCTTTAACCTAGAAT… hypothetical protein
3404_sll5081-sacB ATGAATGAGAAATTTTTCAAATTAG… DUF1963 domain-containing protein
3468_slr6013-sacB ATGGAAGGGGATGTTGTACAGCTAA… DUF2357 domain-containing protein