Plasmids and Cultures

This database contains entries for 3,572 known and predicted gene coding sequences in Synechocystis sp PCC 6803 based on the Kazusa genome sequence and nomenclature (http://genome.microbedb.jp/cyanobase/GCA_000009725.1). Plasmids for generating marked mutants and mutant strains can be searched for by gene Name/Accession (e.g. 'sll1226' or '1513_sll1226-sacB'),  gene homology (e.g. 'hydrogenase large subunit'), Gene ID (e.g. hoxH), or by a portion of the gene coding sequence Sequence (CDS).

Please note, the library is still being completed. Plasmids and/or marked mutants may not be available. Users can also search for available materials by Plasmids made or Mutant made.

Plasmids, mutants and the unmarking spacer plasmid pUC19K-UL are currently available on request. Regardless of the segregation status of the mutant, open reception of a cyanobacterial mutant strain we recommend 1-2 cycles of restreaking on a selection plate containing kanamycin (100 μg/ml).

Name Sort ascending CDS Gene Homology Gene ID
3172_ssl7004-sacB ATGGCTAATTTAATTGTTCGCAATA… DNA-binding protein
3171_sll7003-sacB ATGACAGAGCCAGTCAAATATTTGA… plasmid stability protein
3170_sll7002-sacB ATGACAGATTTTCCTTGGGAATTAA… transposase
3169_sll7001-sacB GTGATGTGTGCATATTGTATGATTT… transposase
3168_sll7106-sacB exodeoxyribonuclease V alpha chain
3167_slr0610-sacB GTGGGCAGTGTGGTGAATCTAGGGG… ABC transporter permease
3166_slr0609-sacB ATGTCCACCGTTGACCATGCCCCCC… GTP-binding protein
3165_slr0608-sacB ATGTCAAGCCGTTCTGCGGGGCGGA… phosphoribosyl-ATP pyrophosphohydrolase:phosphoribosyl-AMP cyclohydrolase hisI
3164_slr0607-sacB ATGACTAGCATTATGATGAATACCG… cyclic nucleotide-binding domain-containing protein
3163_slr0606-sacB ATGCGCATCCTAGCCCTTGTCCCCG… lipopolysaccharide heptosyltransferase family protein
3162_slr0605-sacB ATGGGCTTACTCGTCAACGGCATTT… glutathione S-transferase family protein
3161_slr0604-sacB ATGACCGACGTCCCCGTTAGCCGCA… elongation factor 4 lepA
3160_slr0603-sacB ATGTCCTTCGTCGGTCTCCATATCC… DNA polymerase III alpha subunit dnaE
3159_sll0563-sacB ATGTCAACCCTACTTACCGACCCCC… hypothetical protein
3158_slr0602-sacB ATGCTTTCCTCCCTGTTCTCCGGTG… hypothetical protein
3157_slr0601-sacB ATGTCCACGGAAAACCCCATCGAAA… hypothetical protein
3156_slr0600-sacB GTGAAATTATCCAGCAAAAATTTAG… NAD(P)/FAD-dependent oxidoreductase
3155_slr0599-sacB ATGGTTACCCCACTCAAACTACTCA… serine/threonine protein kinase spkC
3154_slr0598-sacB ATGACCGGTAAACAGTTACACCAGT… DUF3067 family protein
3153_sll0564-sacB ATGCCTAGACAGGTTTGGATTTTTC… class I SAM-dependent methyltransferase
3152_sll0565-sacB ATGGAAGAAACTTTTGTCGCACCGA… hypothetical protein
3151_slr0597-sacB ATGGTTGTCGTCAGGCGATCGAGGC… phosphoribosyl aminoimidazole carboxy formyl formyltransferase/inosinemonophosphate cyclohydrolase; PUR-H(J) purH
3150_slr0596-sacB ATGCGACCTTCCGCCCTTATTCCCC… creatinine amidohydrolase
3149_sll0567-sacB ATGTCCTACACCGCCGATTCCCTCA… ferric uptake regulation protein fur
3148_slr0594-sacB GTGATTGAATTTCGGGAAAGTCTCA… FtsX-like permease family protein
3147_sll0569-sacB ATGGCCAGCACCAACATTTCCGACC… RecA gene product recA
3146_slr0593-sacB ATGGAACTGGGAAAGATTAGTCCAA… cAMP protein kinase regulatory chain
3145_slr0592-sacB ATGGCGATCGCCACAATCTTTGCCC… hypothetical protein
3144_sll0572-sacB GTGGTGACGGCGTGGCCTATTGTCC… GTPase
3143_sll0573-sacB ATGAATTCTCCTAACCAAAACACCA… carbamate kinase arcC
3142_slr0591-sacB ATGGTTGTCAGCACCGTTAATCCCA… ribonucleotide-diphosphate reductase subunit beta
3141_sll0574-sacB ATGGCTCTTTCGCTACCGACAAGGG… integral membrane O-antigen translocator protein rfbA
3140_sll0575-sacB ATGTCTGAAGTTATTCGTCTTGATA… ATP-binding protein rfbB
3139_sll0576-sacB GTGATTATGAAAATTTTGATTACCG… SDR family NAD-dependent epimerase/dehydratase
3138_slr0590-sacB ATGGGCTTAGCCGTTGACAGTAATT… DUF2993 domain-containing protein
3137_slr0589-sacB ATGGATGTTATGGATTTACCTGTTC… cofactor assembly of complex C subunit B
3136_slr0588-sacB ATGATCAGGGATGTCTTTTATCTTC… hypothetical protein
3135_sll0577-sacB ATGCTGAAAGTGTTTCGTCAGTCCT… pentapeptide repeat-containing protein
3134_sll0578-sacB ATGGAAACAAAATTAACCACAGTGG… phosphoribosyl aminoimidazole carboxylase purK
3133_slr0587-sacB ATGATTACCGTCGCACGAAAAACTA… hypothetical protein
3132_slr0586-sacB GTGGCTAATATGGTGCAGAAGCTCG… HAD family hydrolase
3131_slr0585-sacB ATGGGTCGCGCCAAGAAAGTCGTTC… argininosuccinate synthetase argG
3130_slr1192-sacB ATGATTAAAGCCTACGCTGCCCTGG… zinc-containing alcohol dehydrogenase family
3129_sll1106-sacB ATGAGTGACTTAATTGTTATCGGCT… DUF1269 domain-containing protein
3128_sll1107-sacB ATGGTCAATATTTTCAGAATTTGGG… ABC transporter permease
3127_slr1189-sacB GTGGGAGGAACAACAGGCGGTGGAA… homocysteine S-methyltransferase
3126_slr1188-sacB ATGGAACTTTTTAATCGGGTTGGAC… chloroplast membrane-associated 30 kD protein im30
3125_slr1187-sacB ATGACTGACTACTCCGCCCTTGATA… hypothetical protein
3124_slr1186-sacB ATGTGGATTAGTGCCACCGTTGCGT… DUF2214 family protein
3123_slr1185-sacB ATGGATAACACACAGGCGATCGCCC… cytochrome b6/f-complex iron-sulfur protein petC2
3122_slr1184-sacB ATGGCATCAATTGTTTTCCGCTACC… rhodanese-like domain-containing protein
3121_slr1183-sacB ATGTGGGATGAAAGATTTAGCCAGT… class I SAM-dependent methyltransferase
3120_slr1182-sacB ATGAATCAATTTAGGGACTGGGGTT… isoprenylcysteine carboxylmethyltransferase family protein
3119_slr1181-sacB ATGACTACTACCCAATTAGGATTAC… photosystem II D1 protein psbA1
3118_sll1108-sacB ATGACCCCATCCCCGGTCCTCAATC… 5'/3'-nucleotidase surE
3117_sll1109-sacB ATGTCTGCTTATCTGTTTAATCAAG… Cyanobacterial Signature Protein
3116_sll1110-sacB ATGGCGGAAACGTACCTCTTAGACA… peptide chain release factor prfA
3115_slr1179-sacB GTGGATGGCATTGATGCCTGTTTAG… anhydro-N-acetylmuramic acid kinase
3114_slr1178-sacB GTGTTGACCAGTATGAAAGGTTTGT… SH3 domain-containing protein
3113_slr1177-sacB ATGACCGCTCCCGTTAAAGCAGTAA… TIGR03943 family protein
3112_slr1176-sacB GTGTGTTGTTGGCAATCGAGAGGTC… ADP-glucose pyrophosphorylase agp; glgC
3111_sll0430-sacB ATGGCAGTACTCGAAAAAGGCAATA… heat shock protein htpG
3110_slr0462-sacB ATGCCGTCAAATTCAACGTATTTTA… transposase
3109_ssr0817-sacB ATGACTATAAAGGTAGTATTAGCAT… transposase
3108_sll0431-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
3107_slr0460-sacB GTGAGAAGCTTTGAATACTTTAAAT… transposase
3106_slr0459-sacB ATGGAAATGGGTCGGCCAGTGCAAT… hypothetical protein
3105_slr0458-sacB ATGGCTAACGAAAAAATTATTGTTT… 2-phosphoglycolate phosphatase
3104_slr0457-sacB ATGTTTGGTTTCCTCAATCTCCATA… tRNA pseudouridine 55 synthase truB
3103_slr0456-sacB ATGGAAGATTGGGAGAAAAACCTCT… hypothetical protein
3102_slr0455-sacB ATGAAGACAACGTTGTTTTCGGTAA… hypothetical protein
3101_slr0454-sacB GTGCGAATCAATTCATCTTCAAAGA… cation or drug efflux system protein
3100_sll0436-sacB GTGATCTTTGAGCAAGGCATTGAAA… SRPBCC family protein
3099_ssl0832-sacB GTGGCGATGACTAGGAGGTGGGCAG… hypothetical protein
3098_slr0453-sacB GTGGGTTCTACCCTGGTAGGGAAAT… phosphoketolase family protein
3097_slr0452-sacB ATGTCCAACAATCCCAGAAGCCAGG… dihydroxyacid dehydratase ilvD
3096_sll0441-sacB GTGCGCATAATTTTGGTTGTCGCAC… hypothetical protein
3095_sll0442-sacB ATGGCTCTAATAGCAAGACTGATCG… hypothetical protein
3094_slr0451-sacB GTGAAAACCCTAGCCTACGCTAACC… antiviral protein or RNA helicase ski2
3093_sll0443-sacB GTGAAAAGCTGGATTTTGTTCTCTT… hypothetical protein
3092_sll0444-sacB ATGAAAATTACGGAGATAGTGGCCC… hypothetical protein
3091_sll0445-sacB ATGCAAAAAATTTATGCCATCGGTG… hypothetical protein
3090_sll0446-sacB ATGACTAACCAACCCCTACTTCCCA… hypothetical protein
3089_sll0447-sacB ATGGAATTTTTTAAACTTATATCAG… hypothetical protein
3088_sll0448-sacB ATGAATAGACTGAGAAATTTTGCAA… hypothetical protein
3087_sll0449-sacB ATGGCTGGCAATCAACCGGATAAAT… hypothetical protein
3086_slr0449-sacB ATGACTGTTGCTCCGGATCTGGCCC… DNR protein
3085_sll0450-sacB ATGGCAAATTCAACCTTTGATCTCC… cytochrome b subunit of nitric oxide reductase norB
3084_sll0451-sacB GTGGAAATTAATTGGTCTTGGCAAC… GNAT family N-acetyltransferase
3083_sll1542-sacB ATGAAAACAGACAAATGGTTTTACG… DUF2887 domain-containing protein
3082_ssr2786-sacB ATGCGCCTATTTATTTTTTCCCTTA… hypothetical protein
3081_slr1668-sacB ATGTTGTCGGACGCCTACTTTTATC… molecular chaperone
3080_slr1667-sacB ATGTTCACTAAATTCAATCAAGTTC… hypothetical protein
3079_sll1543-sacB GTGAAACTTTATCTAGACACCAGCG… PIN domain-containing protein
3078_sll1544-sacB ATGGAATTTGACCCCGATTCCCTCG… response regulator like protein
3077_ssr2781-sacB ATGCCCATGGAAGCCGGACAACAAT… hypothetical protein
3076_slr1666-sacB ATGAACATCCCCATCCTTGACCTTA… DegT/DnrJ/EryC1/StrS family aminotransferase, pleiotropic regulatory protein degT
3075_slr1665-sacB ATGGCCCTTAGCTTTAGTAAATACC… diaminopimelate epimerase dapF
3074_slr1664-sacB ATGGACTATTTTTTAGTTTGTGGGT… hypothetical protein
3073_sll1545-sacB ATGCTTGAGCTTCATCAGTTTGAAC… glutathione S-transferase gst1
3072_slr1661-sacB ATGCCCAGGGCCATGTTAAGTTGCC… ShlB/FhaC/HecB family hemolysin secretion/activation protein
3071_sll1546-sacB ATGGCTCCTTCCTCTGCCCAGATTG… exopolyphosphatase ppx
3070_sll1547-sacB ATGAGCAAAAAAGTAGCGGCCCTGG… Holliday junction resolvase ruvX
3069_slr1660-sacB ATGGCCCGCAGACCCCCACCCCGTT… DUF3172 domain-containing protein
3068_slr1659-sacB ATGGAAATAACCACTGAAGACTATC… hypothetical protein
3067_slr1658-sacB ATGAGCACTGACCAAACCAACGTCA… hypothetical protein
3066_slr1657-sacB ATGACTACGACAGAATTAACGGCGG… PleD gene product
3065_slr1656-sacB GTGGGCTTATCAAAGGCTTGTGTAG… UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide)pyrophosphoryl-undecaprenol N-acetylglucosamine transferase murG
3064_smr0004-sacB ATGGACGGTTCCTACGCTGCATCTT… photosystem I subunit VIII psaI
3063_slr1655-sacB ATGGCTGAATCTAACCAAGTTGTAC… photosystem I subunit XI psaL
3062_sll1549-sacB ATGAAATGGGCTAACCGGTTGCTAT… histidine phosphatase family protein
3061_sll1550-sacB GTGAGGACTCCTATGTTAAGAAAAC… membrane protein
3060_slr1653-sacB ATGGTTAAAATGCAAATACCATCCT… N-acyl-L-amino acid amidohydrolase ama
3059_slr1652-sacB ATGGGCATTGAGCAAAATAATCCTA… phytol kinase
3058_slr1651-sacB ATGGTATCGCTTAAGCAAAATTTAC… haemolysin secretion ATP-binding protein hlyB
3057_sll1552-sacB ATGTATGAACCAATTCAATTGGACA… N-acetyltransferase
3056_sll0720-sacB ATGACTGCTGATAAATATACAGTTG… toxin-activating lysine-acyltransferase apxIC
3055_sll0721-sacB GTGGAGGGTTTCAAAATGGGGAAAA… leukotoxin; LtA
3054_sll0722-sacB ATGATCAGAACTAAATTGGTTGAGT… hypothetical protein
3053_sll0723-sacB ATGGCTAACAAATTCAAATTTACTG… DUF4114 domain-containing protein
3052_slr0758-sacB ATGAACTTACCGATTGTTAACGAAC… circadian clock protein KaiC kaiC
3051_slr0757-sacB ATGAGCCCCTTTAAAAAAACTTACG… circadian clock protein KaiB kaiB
3050_slr0756-sacB GTGCAGTCTCCCCTCTCCCTCTGTC… circadian clock protein KaiA kaiA
3049_sll0726-sacB GTGTCTAAGCCCCTGATCGCCGCCC… phosphoglucomutase pgm
3048_sll0727-sacB ATGCCACGGTCTTTTTTATTACTTT… hypothetical protein wzy
3047_ssr1258-sacB ATGAACAAGCAAGAATTTTATGTTC… type II toxin-antitoxin system HicB family antitoxin
3046_slr0755-sacB ATGTCAATTCATAGTGGTATTCCTT… NYN domain-containing protein
3045_ssr1256-sacB ATGGTCATTTCCTCACCCCTCCACC… DUF4327 family protein
3044_sll0728-sacB ATGAGTAAAAGTGAGCGTCGTGTTT… acetyl-CoA carboxylase alpha subunit accA
3043_sll0729-sacB ATGGAGGAAACCGGGGAAATAAATA… DNA adenine methylase
3042_ssl1378-sacB ATGAGTAATCCTGAAGGTTATAACG… hypothetical protein
3041_slr0753-sacB ATGGTAGCTAATCTGCCTGCTTTAT… P protein, transporter p
3040_sll0732-sacB ATGGCCAAACCAGTTAATTTGCCTG… hypothetical protein
3039_slr0752-sacB ATGTTAAGTAAAGTCCCCGCCACCA… enolase; phosphopyruvate hydratase eno
3038_slr0751-sacB ATGAAAGTTAATTTAGGCAATTGCT… tetratricopeptide repeat protein
3037_sll0733-sacB ATGGAATTTACCTTTTTACTACCCC… DUF4278 domain-containing protein
3036_slr0750-sacB ATGACTGTTGCTCAACAAGCCCCTT… ferredoxin:protochlorophyllide reductase (ATP-dependent) subunit chlN
3035_slr0749-sacB ATGCGATCAGCGCAGCGGAGACCAC… light-independent ferredoxin:protochlorophyllide reductase (ATP-dependent) iron-sulfur ATP-binding protein chlL
3034_slr0748-sacB ATGCTCATTCCCCTTACCCAAGAAA… Cyanobacterial Signature Protein
3033_sll0735-sacB ATGGCTCTTGGCTATGTTGCCCTTG… glycoside hydrolase family 57 protein
3032_sll0736-sacB ATGTGGACTCCCTGGCATTATCTCG… hypothetical protein
3031_slr0747-sacB ATGGCCAGTGTCAGTTTTGAACAGG… ATP-binding subunit of an ABC-type osmolyte transporter ggtA
3030_slr0746-sacB ATGGTATTACACCAACAACGTTTCT… glucosylglycerolphosphate phosphatase stpA
3029_slr1588-sacB ATGAGTACTATTTTAGTTGTCGAGG… regulatory components of sensory transduction system
3028_sll1470-sacB ATGAGCGCAAGAACCTTATTTGACA… 3-isopropylmalate dehydratase leuC
3027_slr1586-sacB ATGCAAAAAGACTTGATAGCGCCGA… transposase
3026_slr1585-sacB ATGGCTTACGATCTTGATTTACGCA… transposase
3025_slr1584-sacB ATGAGAATTCTTTTAGTGGAGGATG… response regulator transcription factor rre38
3024_sll1471-sacB ATGACACTGCCTTTAATTGCTTATG… phycobilisome rod-core linker polypeptide; CpcG cpcG
3023_sll1472-sacB ATGTTGAAACTAGCCGGTAAAAAAG… hypothetical protein
3022_sll1473-sacB ATGGGCAAATTTCTAATTCCAATCG… PAS domain S-box protein
3021_sll1474-sacB ATGATATCAAATTTTGGACATATTG… transposase
3020_sll1475-sacB GTGCGATTCAACGATTCTGCCGTTG… sensory transduction histidine kinase hik32
3019_slr1583-sacB GTGTTTACTCGACTTGCCCAGCAAC… DUF1815 family protein
3018_sll1476-sacB ATGGGGAAAGGCAAAGCCGATCCAG… hypothetical protein
3017_sll1477-sacB ATGAAGCAATGGCGCTGGCGGATGG… CPBP family intramembrane metalloprotease
3016_sll1479-sacB ATGGAGGGGAAAAACAAGATTATCC… glucose-6-P-dehydrogenase devB
3015_sll1481-sacB ATGGGTGAATCCACTAGGACTGGAC… biotin/lipoyl-binding protein
3014_sll1482-sacB ATGAAAATTCCCCTTGCCTGGCACC… FtsX-like permease family protein
3013_sll1483-sacB ATGAAAACCGCTGCTAGAATTGTTG… transforming growth factor induced protein
3012_sll1484-codA GTGGGGTTCCAGTTTCCAGGAAATT… NADH dehydrogenase ndhC
3011_sll1485-sacB ATGTTCACCCTCAATGACCAAAATC… DUF2231 domain-containing protein
3010_sll1486-sacB ATGCATCCAAATCTTCCTTGGCTCC… DUF2231 domain-containing protein
3009_slr1579-sacB GTGAAACCCCGTTCTTTTTTCGTTC… DUF3352 domain-containing protein
3008_slr1577-sacB ATGCGTCTTGCCACCACCATTGAAG… SMC-Scp complex subunit scpB
3007_slr1576-sacB ATGGGCAATCGATCTCGTTTTGGGG… hypothetical protein
3006_slr1575-sacB ATGCCCTTTGTTGCCATTGCTTTCG… mechanosensitive ion channel
3005_ssl2874-sacB ATGGAAATTCAACTCATCAACATTG… DUF370 domain-containing protein
3004_slr1573-codA ATGACAATGGGGGACGATCTCTGGG… peptidoglycan editing factor PgeF PgeF
3003_slr1572-sacB ATGATGGAAGAAGAATCCCTAGAAA… TIGR00266 family protein
3002_slr1571-sacB ATGAACATTAAACTTCTCAATTCCC… TIGR00266 family protein
3001_slr1570-sacB GTGCTCTACAAAATTCGCCACTATC… TIGR00266 family protein
3000_sll1488-sacB ATGAACTCTTTCTGGCGAACTTGTC… M23 family metallopeptidase
2999_sll1489-sacB ATGGTCAGTGGCCCTGTTTTTCAGT… nickel pincer cofactor biosynthesis protein larB
2998_slr1568-sacB ATGAAACCTGAATTTGCCACTGTCC… hypothetical protein
2997_slr1567-sacB ATGAAACTTTTTCATTGGCTACTTT… hypothetical protein
2996_sll1491-sacB ATGAACAACTATTTCCCTCGATTGA… beta transducin-like protein
2995_slr1566-sacB ATGGTCACCTTTGTCTTGGCAATTA… glycosyltransferase
2994_slr1565-sacB ATGCTGCAATTGACCCCCAGTGCCG… iron-sulfur cluster assembly accessory protein
2993_slr1564-sacB ATGACCAATGCCACCAGCGAAAGCC… RNA polymerase sigma-37 sigF
2992_slr1563-sacB GTGCCCGTGAATTCCCCAGCCCCCT… fructosamine kinase family protein
2991_slr1562-sacB ATGGCTAATTTGTTCAACTGGCTTC… glutaredoxin grxC/grx1
2990_slr1560-sacB ATGATTCACCATCCCCCCGCTGGGG… histidyl tRNA synthetase hisS
2989_slr1559-sacB ATGCCTTCCATCACCGGTAAAACTA… shikimate 5-dehydrogenase aroE
2988_sll1495-sacB ATGGCTTCCTATGACATCACAATTA… L-2-hydroxyglutarate oxidase
2987_sll1496-sacB ATGCGAGCTGTGTTGATGGCAGGGG… mannose-1-phosphate guanyltransferase
2986_slr1557-sacB ATGGTTACTGCCATGAGTCCTGCTA… Cyanobacterial Signature Protein (helix-turn-helix domain-containing protein)
2985_sll1498-sacB ATGTGGTTGATTCGGCGGCGGCCGG… carbamoyl-phosphate synthetase subunit A carA
2984_slr1556-sacB ATGAAAATCGCTTTTTTTAGCAGTA… 2-hydroxyaciddehydrogenase ddh
2983_sll1499-sacB ATGTCCTTCCAATATCCGTTGCTAG… ferredoxin-dependent glutamate synthase gltB
2982_slr0668-sacB ATGCTTAAAAAAGTATCGTTTTCTA… hypothetical protein
2981_slr0667-sacB ATGTCTAAAAAACAATATCTAAAGC… hypothetical protein
2980_slr0666-sacB ATGGACAACGCGACAATCACTGCAA… hypothetical protein
2979_slr0665-sacB ATGTTGCAAGCCTACCGTCGCCACG… bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase acnB
2978_slr0664-sacB ATGTCGAATAATCTCCATTTAGTCA… type II toxin-antitoxin system RelE/ParE family toxin
2977_ssr1114-sacB ATGATGAGAGCTTTTGAGGTAATGG… hypothetical protein
2976_sll0621-sacB ATGTGGCAATCTCTGCAAAATCAGC… cytochrome c biogenesis protein dsbD/ccdA
2975_sll0622-sacB GTGTTCACCGCCGTTGCCCCGCCCC… quinolinate synthetase nadA
2974_sll0623-sacB ATGGTGGTCGAGAAGCTATTGATTG… hypothetical protein
2973_slr0662-sacB ATGGAAGGGCAGTCAATCGAACTAG… arginine decarboxylase speA