Plasmids and Cultures

This database contains entries for 3,572 known and predicted gene coding sequences in Synechocystis sp PCC 6803 based on the Kazusa genome sequence and nomenclature (http://genome.microbedb.jp/cyanobase/GCA_000009725.1). Plasmids for generating marked mutants and mutant strains can be searched for by gene Name/Accession (e.g. 'sll1226' or '1513_sll1226-sacB'),  gene homology (e.g. 'hydrogenase large subunit'), Gene ID (e.g. hoxH), or by a portion of the gene coding sequence Sequence (CDS).

Please note, the library is still being completed. Plasmids and/or marked mutants may not be available. Users can also search for available materials by Plasmids made or Mutant made.

Plasmids, mutants and the unmarking spacer plasmid pUC19K-UL are currently available on request. Regardless of the segregation status of the mutant, open reception of a cyanobacterial mutant strain we recommend 1-2 cycles of restreaking on a selection plate containing kanamycin (100 μg/ml).

Name CDS Gene Homology Gene ID Sort descending
2851_sll0513-sacB GTGTCAGGAGTTGATCGCATGAGCC… phytoene/squalene synthase family protein shc
2451_sll0184-sacB ATGACTAAACCAAGCAACGATGAGC… RNA polymerase sigma factor sigC
2993_slr1564-sacB ATGACCAATGCCACCAGCGAAAGCC… RNA polymerase sigma-37 sigF
0893_slr1545-sacB GTGTTGGGTAAATCCATGAATCAAG… RNA polymerase sigma-E factor sigG
1215_sll0856-sacB ATGATCCAGCGAAGTCAGCAGGGTG… RNA polymerase sigma-E factor sigH
0291_slr0963-sacB ATGGTAACCACCCCCACCGCTGCCC… ferredoxin-sulfite reductase sir
2295_sll0400-codA ATGGAACTTTACCTTATTCGTCACG… phosphohistidine phosphatase; sixA sixA
3094_slr0451-sacB GTGAAAACCCTAGCCTACGCTAACC… antiviral protein or RNA helicase ski2
2853_slr0534-sacB GTGGTTTGGCATTATTCCAACATTA… soluble lytic transglycosylase slt
0793_sll1120-sacB ATGGTTTATGTCAAGCGCATCGAAC… chromosome segregation protein SMC1 smc
1872_slr1639-sacB ATGGCTAAGGAAAAAGAAAGGATAA… small protein smpB
1912_slr0448-sacB ATGGCTAAAGCCCGGACAAAGTTTG… DNA repair protein RadA sms/radA
2737_sll0792-sacB ATGAGTAAGTCCTCGTTGTCAAAGT… Zn(II)-sensing metalloregulatory transcriptional repressor, transcriptional repressor smtB/ziaR
1449_slr1516-sacB ATGGCTTACGCACTACCTAACTTAC… superoxide dismutase sodB
2973_slr0662-sacB ATGGAAGGGCAGTCAATCGAACTAG… arginine decarboxylase speA
0009_slr1312-sacB ATGGGGGAAGAACCTGTGCCGGCGG… arginine decarboxylase speA
0132_sll0228-sacB ATGCATAGTCCTAATAAATTTACCT… arginase speB
0720_sll1077-sacB ATGAGCGATGCCACCCCGTTTCGTC… agmatine ureohydrolase speB
2374_sll0679-sacB ATGTTTGATTTAAGTCGATTGAGCC… SphX protein precursor sphX
3155_slr0599-sacB ATGGTTACCCCACTCAAACTACTCA… serine/threonine protein kinase spkC
1976_slr0152-sacB ATGGAATCACTCCCCGTCCTAGGCG… serine/threonine protein kinase spkG
0641_sll1283-sacB GTGAGGAAATTTGTCATGGAATTTA… sporulation protein; SpoIID spoIID
1500_slr1325-sacB ATGAATGCCGTCGCCGCTCTGCCCA… (p)ppGpp 3-pyrophosphohydrolase spoT
1777_slr1673-sacB GTGTATCCGTTGACCAGTGACATTG… rRNA methylase spoU
2240_slr0021-codA/sacB ATGATTTGGCCCTTCAAAACCAGCA… protease IV; sppA sppA
1157_sll1703-sacB ATGAAGAACTTTTTCCAACAAATGG… protease IV sppA
2813_sll0045-sacB ATGAGCTATTCATCAAAATACATTT… sucrose phosphate synthase sps
1475_slr2116-sacB ATGAACGAAGAAAAACAACAAGAAT… spore coat polysaccharide biosynthesis protein; SpsA spsA
1473_slr2114-sacB ATGAAATTATCCGTTCTTACTGTGG… spore coat polysaccharide biosynthesis protein; SpsC spsC
0576_slr1020-sacB ATGAGAGCTCTGGTTATTGGCGGTG… sulfolipid biosynthesis protein; SqdB sqdB
0777_slr1897-sacB ATGGTTTCATGGTGCCGATGGCGAT… sugar ABC transporter substrate-binding protein srrA
1716_slr1288-sacB GTGTCTTCATCCAATAGTCCTTCCG… 6S RNA ssaA
2880_slr0925-sacB ATGTCAGTGAACAGCATCCATTTGG… single-stranded DNA-binding protein ssb
3030_slr0746-sacB ATGGTATTACACCAACAACGTTTCT… glucosylglycerolphosphate phosphatase stpA
0366_sll1023-sacB ATGGACTTGTTAGAGTACCAGGCCA… succinate--CoA ligase sucC
1802_sll1557-sacB ATGAAATGGCATAAAGAGAGCAAAG… succinyl-CoA synthetase sucD
0264_slr1295-sacB ATGGTCCAAAAGTTATCCCGTCGCC… iron transport protein sufA
2574_slr0074-sacB ATGAGTTCCACCACTGTTAAAAACC… Fe-S cluster assembly protein sufB
2575_slr0075-sacB ATGAGCCAGACTATTCTTTCCATTA… Fe-S cluster assembly ATPase sufC
2576_slr0076-sacB ATGACCGCCGCGATTTTAGCCGATG… Fe-S cluster assembly protein sufD
2918_slr1419-sacB ATGAACAGGCTCTCAATTATTTTTC… cysteine desulfuration protein sufE
2573_sll0088-sacB ATGGGGGTTGTCCTTTCAGTTTACT… iron-sulfur cluster biosynthesis transcriptional regulator sufR
1669_sll1383-codA ATGACTTCTGCCCAAAAACCCGTTT… extragenic suppressor; suhB suhB
1282_sll1959-sacB ATGTTACCAGAGGTTGAACAAAGAC… extragenic suppressor; histidinol-phosphatase suhB/hisN
0929_slr1223-sacB ATGGCCAGTTGGTCACTAAGGACCG… cell division inhibitor sulA
0902_sll1459-sacB ATGAATTTTTTGCTCACCAATGACG… 5'/3'-nucleotidase SurE surE
3118_sll1108-sacB ATGACCCCATCCCCGGTCCTCAATC… 5'/3'-nucleotidase surE
0683_sll1924-sacB ATGGCACCACAAAAGCCGTCAACAA… Crp/Fnr family transcriptional regulator sycrp2
0234_slr1793-sacB ATGGGTAAGAATCTCCTCGAACAAC… transaldolase talB
2817_sll0042-sacB ATGTCCACCATTGCAAGCGAATACC… methyl-accepting chemotaxis protein II tar
0897_ssl2823-sacB GTGACCCTCCAGGAGCAAAAAATGT… twin-arginine translocase TatA/TatE family subunit tatA
2264_sll0194-sacB ATGTCAACCCAGCTTGATAACATCA… twin-arginine translocase subunit TatC TatC
2795_slr0713-sacB GTGCCATTGCCTAGTGTGAATTTTA… transfer RNA-guanine transglycosylase tgt
1318_sll1615-sacB ATGCAATTAGAAGATACTATTGCGG… thiophen and furan oxidation protein thdF/mnmE
2688_slr0118-sacB ATGAGAACTGCTTGGGTTGCTAAGC… ThiC protein thiC
0405_sll0635-sacB ATGCAACAAGCTTCCCCCACGGCGA… thiamin biosynthetic bifunctional enzyme thiE
2383_slr0633-sacB ATGCAAACAACCAGTGACGTTCTCA… ThiG protein thiG
1071_slr1854-sacB ATGACCACAACAAAAGGTAAGATTG… thimanine synthesis protein ThiJ thiJ
2298_ssr0102-sacB ATGACTTCTGACCCCATTACCCTCC… thiamine biosynthesis protein ThiS thiS
1304_slr1993-sacB ATGGCCGCCCATCCCAACCCATGGC… acetyl coenzyme A acetyltransferase (thiolase) thl
2357_sll0455-sacB GTGACAGTTAAAATTGGTTTACTCG… homoserine dehydrogenase thrA
1113_sll1760-sacB ATGGTCAGCTTTACCGTTTCTGTGC… homoserine kinase thrB
1704_sll1172-sacB ATGATTTCTTGTCATTCTTTCACCA… threonine synthase thrC
1180_sll1688-sacB ATGACCACCGCCACCACCACGGCTC… threonine synthase thrC
2591_sll0078-sacB ATGGCCAAAACCGTAGTTTCCCCCG… threonyl-tRNA synthetase thrS
2899_sll0533-sacB ATGAAAGTTACCCAGGAAAAATTGC… trigger factor tig
1703_slr1278-sacB ATGGCTTGGACATTACTGCACAGTA… tRNA lysidine(34) synthetase tilS
0732_sll1070-sacB ATGGTCGTTGCTACCCAGTCCTTAG… transketolase tktA
0952_sll1129-sacB ATGACTCCTTCCCTAACCCTTCCCG… 2-hydroxy-6-oxohepta-24-dienoate hydrolase todF
1286_slr2058-sacB ATGTCCAAACTCGTTATCGTTGAAT… DNA topoisomerase I topA
2177_slr0783-codA GTGCGAAAAATCATTATTGCGGGCA… triosephosphate isomerase tpi
2193_slr0350-sacB ATGATAATTCGAGAATTTTACAGCA… Cyanobacterial Signature Protein transposase
0609_sll1300-sacB GTGTTGGCCTGTCCCGATTGGGCCA… tRNA (guanosine(46)-N7)-methyltransferase TrmB trmB
0265_sll1198-sacB GTGCAGTTTGACGTTCTCACCCTGT… tRNA (m1G37) methyltransferase trmD
2044_slr0992-codA ATGGTCAAATTAGTCCTAGTTAATC… tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine(34)-2'-O)-methyltransferase TrmL TrmL
0294_slr0966-sacB ATGAACGCTGTTGCCGCTTGTTTTA… tryptophan synthase alpha chain trpA
2868_slr0543-sacB GTGAACATTACTTCCCCTCTTTCTG… tryptophan synthase beta subunit trpB
2894_slr0546-sacB ATGGAAATTCGCCGCCGGCCTCCTA… indole-3-glycerol phosphate synthase trpC
1084_slr1867-sacB GTGAATACCACGGCTTCTTCCCCTT… anthranilate phosphoribosyltransferase trpD
0111_slr0738-sacB ATGATTTCCCCTGGGTTTTCTCACT… anthranilate synthetase alpha-subunit trpE
1638_slr1979-sacB GTGGCATCAATTGCGCATTGTTCGG… anthranilate synthase component I trpE
1960_sll0356-sacB ATGGCCATGGAGGTAAAAATTTGCG… 5-phosphoribosyl anthranilate isomerase trpF
2312_slr0055-sacB GTGTATCGCAACGATCAAATTAGCC… anthranilate synthase component II trpG
1122_slr1884-sacB ATGAAGAATTGTGAAAATGATCACA… tryptophanyl-tRNA synthetase trpS
2818_sll0041-codA ATGACCCAAAATCCTTCCTCCGATC… GAF domain-containing protein trs or cheD
0745_sll1820-sacB ATGCATTCTTCTCCGTCTGCTGGTA… pseudouridine synthase 1 truA
3104_slr0457-sacB ATGTTTGGTTTCCTCAATCTCCATA… tRNA pseudouridine 55 synthase truB
0067_sll1057-sacB ATGGTTGTAGCATGGACAACAAGGG… thioredoxin M trx
2655_slr0623-sacB ATGAGTGCTACCCCTCAAGTTTCCG… thioredoxin trxA
1408_sll1980-sacB ATGACCCCGGCCAAAATTCGTAACG… thiol:disulfide interchange protein; TrxA trxA
0713_slr1139-sacB ATGAGTTTACTGGAAATCACCGACG… thioredoxin trxB
2270_slr0233-sacB ATGGCCGTCAAAAAACAGTTTGCTA… thioredoxin M trxQ
0057_sll1063-sacB ATGACCGTACCTCCTCCCCTTTCCC… tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB tsaB
1939_sll0257-sacB ATGAATGAAAACTCCATGGAATTTT… tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE tsaE
1568_sll1261-sacB ATGGCAGAAATTACCGCTCAACTCG… elongation factor TS tsf
1743_sll1099-sacB ATGGCACGCGCAAAATTTGAACGGA… protein synthesis elongation factor Tu tufA
2432_sll0372-sacB ATGGAAGTAGACGGTATTTGGTTGC… Cyanobacterial Signature Protein type II toxin-antitoxin system HicA family toxin
1392_slr2081-sacB ATGAAAATTGGTGTTGTTGGTTTGG… prephenate dehydrogenase tyrA
0589_slr1031-sacB ATGGTTGTAAATTCTGATCCCGATT… tyrosyl tRNA synthetase tyrS
0592_ssr1720-sacB GTGCCGGAATTTTCCCTAGCTGAAA… tyrosyl tRNA synthetase tyrS
2881_slr0926-sacB ATGGTTGCCCAAACCCCATCTTCCC… 4-hydroxybenzoate-octaprenyl transferase ubiA
0272_slr1300-sacB ATGACCTTTGTAGCCGCTTCCATAA… UbiH protein ubiH
0180_slr1099-sacB ATGGCACAACCTTTGATTTTGGGGG… 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ubiX
2109_slr0185-codA ATGACCGATTTGACCCTGGCCGCTC… uridine 5-monophosphate synthase umpS
2727_slr0790-sacB GTGGGATTGTTGAGGCGATCATCGT… UmuC protein umuC
0190_sll1035-sacB ATGGCTTCTCAATTACGTGTTTATG… uracil phosphoribosyltransferase upp
1272_slr1256-sacB ATGCAGCTAAGCCCCCAGGAAAAAG… urease gamma subunit ureA
1907_sll0420-sacB ATGGCAACTATGATTCCTGGCGAAA… urease beta subunit ureB
0505_sll1750-sacB ATGAGTTATCGGATGGACCGCCACA… urease alpha subunit ureC
0490_sll1639-sacB ATGGTTGAATGCTTGGTGCAGGCTC… urease accessory protein D ureD
0924_slr1219-sacB ATGGTGATTTTTGATCATCGCCTAG… urease accessory protein E ureE
0779_slr1899-sacB GTGGGAGCCTACAACTATTCCGAAG… urease accessory protein F ureF
0395_sll0643-sacB ATGGCTCAAACTCCCCTCCGCATTG… urease accessory protein G ureG
0804_slr1201-sacB ATGCAAAATTCTGCCCCCCCTTCTG… urea ABC transporter permease subunit UrtC urtC
2430_sll0374-sacB ATGGCTATGTTATCCTTTCCCCCAT… urea ABC transporter ATP-binding subunit UrtE urtE
0874_slr1844-sacB ATGCCCGAACAAAATAGCATCCGTA… excinuclease ABC subunit A uvrA
2341_sll0459-sacB ATGACTTCTGACCTCTTTTCCCTCC… excinuclease ABC subunit B uvrB
1042_sll0865-sacB ATGGTTGCTACTGTTTCCTCTACGT… excinuclease ABC subunit C uvrC
0927_sll1143-sacB GTGCCCATGACTGTTGTCCCCGACT… DNA helicase II uvrD
2912_slr0557-sacB ATGACCACTTCCCTGCCGCCCCAAT… valyl-tRNA synthetase valS
0435_ssl2922-sacB ATGAACACAGCTCAAATTAGCACCG… virulence associated protein B vapB
0434_ssl2923-sacB ATGAAGTATTTACTAGATACGAATA… virulence associated protein C vapC
2362_sll0690-sacB GTGCAGTATCCTTATTTGCTAGACA… virulence associated protein C vapC
2088_sll0173-sacB ATGAGTCCCTTTCCAGCTAAATCCC… virginiamycin B hydrolase; Vgb vgb
2377_sll0617-sacB ATGGGATTATTTGACCGTTTAGGCC… chloroplast membrane-associated 30 kD protein vipp1
0361_slr1085-sacB ATGAAGCTAACCATTCTTAACCAAT… glycosyltransferase WbuB wbuB
3373_sll5050-sacB ATGGTGAGATCGCCCCAATTCCGGG… colanic acid biosynthesis glycosyltransferase wcaL
0864_sll1723-sacB ATGGCCATCGCCTACGTTGTTAAAC… colanic acid biosynthesis glycosyltransferase WcaL wcaL
2062_slr0328-codA ATGAAATTGTTATTTGTTTGTTTAG… low molecular weight phosphotyrosine protein phosphatase wzb
3048_sll0727-sacB ATGCCACGGTCTTTTTTATTACTTT… hypothetical protein wzy
0104_slr0733-sacB ATGTTCCTCCCTTCCCCTAACAATT… integrase-recombinase protein xerC
3381_slr5058-sacB ATGGCAAAACGTTCCCTTAAAGCTT… NACHT domain-containing NTPase xssQ
3382_sll5059-sacB ATGACTGAGACTTCTCCGACGGTTG… two-component response regulator xssR
3383_sll5060-sacB GTGATTAATTCGGGAACCTTAATTA… two-component hybrid sensor and regulator xssS
2018_sll1854-codA ATGGCCAATCTATTTTTTCTCGGTT… exodeoxyribonuclease III; xthA xthA
2063_slr0329-sacB GTGCTGGTATGGCTCCCCTGGGGGG… xylose repressor xylR
0208_sll1685-sacB ATGTTACCTGACAAAAAACTCGGTT… heme binding protein precursor ycf10
0263_ssr2142-sacB ATGGACCTACTCCTTTCTACCCTCG… YggT family protein ycf19
0424_sll1509-sacB ATGCAGCGCACCCGATTAAATACCA… Ycf20-like protein ycf20
0773_sll1797-sacB GTGGATGTGATTGACATGGCTCCAG… DUF98 domain-containing protein ycf21
0471_sll1002-sacB ATGCTCAGACCCCGCACCATCAAAG… MCE family protein ycf22
2173_sll0751-sacB ATGACAGCAGGACGAAACCAGCGCC… Substrate binding subunit of ER-derived-lipid transporter from the PLN03094 super family ycf22
0510_slr2032-sacB ATGAGTGCAAACCTTGCCCAACTCC… DUF561 domain-containing protein ycf23
1561_slr0823-sacB ATGCCCCGCACCCAACGTAACGATA… photosystem I assembly protein Ycf3 ycf3
2170_ssl1417-sacB ATGGGTGATTTTTTAGCCAACGTTT… ycf33 gene product ycf33
2791_sll0661-sacB ATGTCTCACTTTAGCAATATCAAAA… DUF1257 domain-containing protein ycf35
2657_sll0584-sacB ATGAAGCCGATGCGGGAATCTTCCC… DUF1230 family protein ycf36
2081_slr0171-codA ATGACTGAGTCTCTACCCATTGTTT… tetratricopeptide repeat protein ycf37
2161_sll0760-sacB ATGAGTCAAACCCTCACCCCTCCCA… Ycf38 ycf38
1524_sll1218-sacB ATGAAAGTTTTAGTTATCGGCGCCA… SDR family oxidoreductase ycf39
1953_slr0399-sacB ATGCGAGTTTTGGTGGTAGGCGGCA… NAD-dependent epimerase/dehydratase family protein ycf39
0134_sll0226-sacB ATGGGTGGACAGACGCTCGCAGAAT… photosystem I assembly protein Ycf4 ycf4
1398_slr2087-sacB ATGACCATTGCCAATCCTTCCCCTA… cytochrome c biogenesis protein ycf44
0404_slr0692-sacB ATGTCGGAACTTAGCCTGGCCCATC… AAA family ATPase ycf45
2346_slr0480-codA ATGACTTTTAGTGAAGAATTTGAAT… AAA family ATPase ycf46
2036_ssr3307-sacB ATGACTTTGATTACTGTTCTACGAA… preprotein translocase subunit SecG ycf47
0513_slr2034-sacB ATGCCTGTTAAATTCCCCAGTTTGA… photosynthesis system II assembly factor Ycf48 ycf48
0146_sml0004-codA ATGGACATTTTGACATTAGGTTGGG… cytochrome b6-f complex subunit; petN ycf6/petN
0990_sll1281-sacB ATGTGCTTCCCTCAGGGCACATATT… photosystem II reaction center protein PsbZ ycf9/psbZ
1372_sll0245-sacB ATGCTTAGAGCTGGAATTGTTGGTC… redox-regulated ATPase YchF ychF
0346_slr1072-sacB ATGAAAATAGCATTAATTTCTGGCA… GDP-D-mannose dehydratase yefA
2035_slr1945-codA ATGGCAGAGGCACCGATCGCCCCGG… 23-bisphosphoglycerate-independent phosphoglycerate mutase yibO
1666_slr1471-sacB ATGGATTTTGGTATCGGTTTTATTT… membrane protein insertase yidC
2469_ssl0331-sacB ATGATGAAAAAGTTGCTTTTAACTC… membrane protein insertion efficiency factor YidD yidD
1371_slr0267-sacB ATGGCTTTAATCCAATGGTATCCCG… ribosome biogenesis GTPase YlqF ylqF
1511_slr1331-sacB ATGTCCGATCGCCTTGTTTGCCCTA… processing protease ymxG
0480_slr1761-sacB ATGAGGGGAAGAACCCATGGGATAA… FKBP-type peptidyl-prolyl cis-trans isomerase ytfC
0703_sll1910-sacB ATGGATTATTCGATCGCCACACTTT… protein conferring resistance to acetazolamide; Zam zam
0723_sll1076-sacB ATGGGATGGAAAACCATCTTTGTTG… Zinc exporter ziaA
0532_slr2043-sacB ATGTTCATTTTCCCCGCTGTTCCCC… periplasmic binding protein component of an ABC type zinc uptake transporter zntC
0873_slr1843-codA ATGGTAACGCTACTCGAAAATCCCT… glucose 6-phosphate dehydrogenase zwf
0610_sll1299-sacB ATGAAATTCCTGATTCTCAATGCCG… acetate kinase `