Plasmids and Cultures

This database contains entries for 3,572 known and predicted gene coding sequences in Synechocystis sp PCC 6803 based on the Kazusa genome sequence and nomenclature (http://genome.microbedb.jp/cyanobase/GCA_000009725.1). Plasmids for generating marked mutants and mutant strains can be searched for by gene Name/Accession (e.g. 'sll1226' or '1513_sll1226-sacB'),  gene homology (e.g. 'hydrogenase large subunit'), Gene ID (e.g. hoxH), or by a portion of the gene coding sequence Sequence (CDS).

Please note, the library is still being completed. Plasmids and/or marked mutants may not be available. Users can also search for available materials by Plasmids made or Mutant made.

Plasmids, mutants and the unmarking spacer plasmid pUC19K-UL are currently available on request. Regardless of the segregation status of the mutant, open reception of a cyanobacterial mutant strain we recommend 1-2 cycles of restreaking on a selection plate containing kanamycin (100 μg/ml).

Name Sort descending CDS Gene Homology Gene ID
2201_ssl0601-sacB ATGACTCAAGTTGTTGTAGGTCAAA… 30S ribosomal protein S21 rps21
2202_slr0355-sacB ATGGAAAACAATTCTCTGGCACCTT… biotin biosynthesis bioU
2203_slr0356-sacB ATGACTAGACCAATTTCCCTGGGCT… DUF2808 domain-containing protein
2204_sll0312-codA ATGCGCAATCCCCTCCGTTGGCTCC… OppB in a binding protein-dependent transport system
2205_slr0357-sacB ATGGGAGCTATCCAAGCCATTCGTG… histidyl-tRNA synthetase hisS
2206_slr0358-sacB ATGACCCCATGGACAATTTGGTTTA… hypothetical protein
2207_sll0310-codA ATGAGTTTGAGTTACCGTATTCGTC… N-acetyltransferase
2208_sll0309-sacB ATGGTCAATCTTCTCGTAATTAGTT… hypothetical protein
2209_sll0024-sacB GTGAAAATTACTTGTTTAAAACATA… hypothetical protein
2210_sll0023-sacB ATGCAACCGATAAAAATTAGTCGTC… glutathionylspermidine synthase preATP-grasp family protein
2211_sll0022-sacB ATGGAACCAAATCATTTCCCCGGTA… DUF1190 domain-containing protein
2212_slr0001-sacB GTGCTAGACGAACAAGCAAAGAAAA… flavin reductase family protein
2213_sll0021-codA ATGTTAAAAGTCCTGCATCTTTCTG… exonuclease SbcCD subunit D
2214_sll0020-sacB ATGTTTGAACGCTTTACAGAAAAAG… ATP-dependent Clp protease regulatory subunit clpC
2215_sll0019-sacB ATGGTGAAACGCATTTCTATCCTCG… 1-deoxy-D-xylulose-5-phosphate reductoisomerase dxr
2216_sll0018-sacB ATGGCTCTTGTACCAATGAGACTGC… fructose-16-bisphosphate aldolase cbbA
2217_sll0017-sacB ATGCCCGGTGGTGTCAGTTCCCCGG… glutamate-1-semialdehyde 21-aminomutase hemL
2218_sll0016-codA ATGATTAAGCAATTTTTCCCGTTAT… membrane-bound lytic transglycosylase A mltA
2219_slr0006-codA ATGGTTACACTAGATAAAACTGCAA… Glutamate/glyoxylate aminotransferase
2220_slr0007-codA ATGGCTCTTTCCCCCGCAGACGTTA… nucleotidyltransferase
2221_slr0008-sacB ATGGGTAAACGGACAAGGCGGTTTT… carboxyl-terminal processing protease ctpA
2222_slr0009-codA ATGGTACAAGCCAAAGCAGGGTTTA… ribulose-15-bisphosphate carboxylase/oxygenase large subunit rbcL
2223_slr0011-codA GTGTTCATGCAAACTAAGCACATAG… unknown function rbcX
2224_slr0012-sacB ATGAAAACTTTACCCAAAGAGCGCC… ribulose bisphosphate carboxylase small subunit rbcS
2225_slr0013-sacB ATGAAGCTCATCGATTCCCGTGGCA… flavin reductase family protein
2226_slr0014-sacB ATGGAATGGAACGAGAGTCTTCTCC… Mg2+ transport ATPase mgtC
2227_sll0012-sacB ATGATAATTCGAGAATTTTACAGCA… transposase
2228_slr0015-sacB ATGCGTATATTTATTAGCACGGGGG… lipid A disaccharide synthase lpxB
2229_ssl0020-codA ATGGCATCCTATACCGTTAAATTGA… ferredoxin petF
2230_slr0016-codA ATGTATGACGACGACCAGCGCCGCG… RDD family protein
2231_slr0017-codA GTGCTTCAAGTTGCTACTCCTACCG… UDP-N-acetylglucosamine 1-carboxyvinyltransferase murZ
2232_slr0018-sacB ATGGTAAATTCCCACCGCCTTGAAA… fumarase fumC
2233_sll0010-codA GTGATTAAAATTCGAGGCTTTCCGG… hypothetical proteins
2234_slr0019-sacB ATGGTGTTTCGATTCCCCTCGCCAG… fimbrial biogenesis outer membrane usher protein
2235_sll0008-sacB ATGGTGTCAATATTTCATCAATTGG… hypothetical protein
2236_sll0007-sacB ATGGTTTTAGCCTCAGCAAAAGTAC… Uma2 family endonuclease
2237_sll0006-sacB ATGAGTCTGAATTGGATTAGTCGCG… aspartate aminotransferase aspC
2238_sll0005-codA ATGTCTCCAGCCCCCATGCCCGTTA… ABC1-like
2239_slr0020-codA GTGCAATGTAGCTTGGTTGAGGTGT… DNA recombinase recG
2240_slr0021-codA/sacB ATGATTTGGCCCTTCAAAACCAGCA… protease IV; sppA sppA
2241_sll0002-codA GTGTTTAAATCCTTCTCCCGCAAAC… penicillin-binding protein 1A ponA
2242_slr0213-codA GTGACTACCCAAATCCCCGTTCCCC… GMP synthetase; guaA guaA
2243_slr0214-sacB ATGGCCAGACCCATTGCCATCGACT… cytosine-specific methyltransferase
2244_sll0210-sacB ATGTCCCCCCGCCAATTAAATTTTC… undecaprenyl-diphosphate phosphatase
2245_slr0216-codA ATGGCTTTTCCTATCCTCGTCACCG… cobinamide kinase/cobinamide phosphate guanylyltransferase cobU
2246_slr0217-sacB ATGGCAGACGCCATTGAAGTTAAAA… hypothetical protein
2247_ssr0349-codA ATGTTGGTGCCCATTCTCATTTTTG… hypothetical protein
2248_sll0209-sacB ATGTTTGGTCTTATTGGTCATCTCA… long-chain acyl-[acyl-carrier-protein] reductase
2249_sll0208-sacB ATGCCCGAGCTTGCTGTCCGCACCG… Cyanobacterial Signature Protein aldehyde oxygenase (deformylating)
2250_sll0207-sacB ATGGTCAGTGTTGACCGATTCCTGC… glucose-1-phosphate thymidylyltransferase rfbA
2251_slr0220-codA ATGCCCCTGCAAACCTTTCTATTTG… glycyl-tRNA synthetase beta chain glyS
2252_sll0205-codA ATGCTACTGGACACCCACACGCTTT… type II toxin-antitoxin system VapC family toxin
2253_sll0204-codA ATGACCACTTTAACGCCCATCCATG… glucose inhibited division protein A gidA
2254_slr0222-codA ATGCCTATCATTCCTAGCCCCAAAG… hybrid sensory kinase
2255_sll0202-sacB ATGACCCTTCGATCGCCAGTGGAAT… glucose inhibited division protein A gidA
2256_slr0224-codA ATGGATCATTTATTTTGGATTTATA… sterol desaturase family protein, IS630 family transposase
2257_sll0201-sacB ATGTTAAGAGAACTAATTAAGCTCT… transposase
2258_sll0200-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
2259_sll0199-codA ATGTCTAAAAAGTTTTTAACAATCC… plastocyanin petE
2260_slr0226-sacB ATGAATCCTTGCAAATTTTTTCGTT… hypothetical protein
2261_sll0198-sacB ATGGGTCAAACCATCACTCCGCCTC… Uma2 family endonuclease
2262_slr0228-codA ATGAAATTTTCCTGGAGAACTGCCC… cell division protein; FtsH ftsH
2263_sll0195-codA ATGGCATCCTCCGTTGCAATTAGGG… ATP-dependent proteinase; BsgA bsgA
2264_sll0194-sacB ATGTCAACCCAGCTTGATAACATCA… twin-arginine translocase subunit TatC TatC
2265_slr0229-sacB ATGAACGTTTCCAAAATTGCAGTTT… 3-hydroxyisobutyrate dehydrogenase, Tartronic semialdehyde reductase mmsB
2266_slr0230-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
2267_slr0231-codA ATGTTATTCCAAAGATTTTTGGACT… DNA-3-methyladenine glycosylase 2 family protein
2268_sll0192-sacB ATGTTGCCGAAGATTCTACTGCTCA… hypothetical protein
2269_slr0232-codA ATGGGTTGGGAATTTTTTTCGCTAG… DedA family protein
2270_slr0233-sacB ATGGCCGTCAAAAAACAGTTTGCTA… thioredoxin M trxQ
2271_sll0191-sacB ATGAACAGGGGAGCAAAAGTAAAGA… hydroxylase
2272_sll0416-sacB ATGTCTAAACTTATTTCCTTTAAGG… 60kD chaperonin 2 groEL-2
2273_sll0415-sacB ATGCGTTTTCGATGTTACTTAATAT… ABC transporter
2274_sll0414-sacB ATGGTAGACAATAATCAAGCCCAGG… pentapeptide repeat-containing protein
2275_slr0431-codA/sacB GTGCGACCAAAATTTTTTTCTAGGA… SIMPL domain-containing protein
2276_ssl0788-sacB GTGGAACTTTTTGACCTAGTGGAAG… hypothetical protein
2277_ssl0787-sacB ATGGCCAGCGGCACTGACCCCGGTT… hypothetical protein
2278_sll0413-codA GTGTTAACTTCGCCCATGTCTGATG… Cyanobacterial Signature Protein
2279_sll0412-sacB ATGCCCTTGCCTTTGATGATGATTA… DUF445 family protein
2280_sll0410-codA GTGAGTGATTCCCCCAAGCCCCAAT… acyl-CoA thioesterase
2281_sll0409-sacB ATGGATAAACCCTATCACGTTAAAT… o-succinylbenzoate synthase
2282_sll0408-codA ATGGGGGCGTTGAAGTGGGAAAATT… peptidyl-prolyl cis-trans isomerase
2283_slr0434-codA ATGATATCCAGTAACGATTTTCGCA… elongation factor P; efp efp
2284_slr0435-codA GTGGCTATTAACTTTACGGAACTGC… biotin carboxyl carrier protein of acetyl-CoA carboxylase, accB accB
2285_slr0436-sacB GTGCCGACTTCCCCAACAATGACTA… carbon dioxide concentrating mechanism protein; CcmK ccmK
2286_sll0406-sacB ATGAGTATTATTTGTCTTGATACAA… PIN domain-containing protein
2287_sll0405-sacB ATGACCCAAAGCTATGGAGATACCA… PQ-loop repeat-containing protein
2288_sll0404-sacB ATGGCCATTTTCTCCCCCGTCAACG… glycolate oxidase subunit; GlcD glcD
2289_slr0438-codA ATGAGCGAAGATTCCCCCAAACCAG… DUF3082 domain-containing protein
2290_sll0403-codA ATGTCATCTTTTAATCAGATAACTA… hypothetical protein
2291_slr0439-sacB ATGAGTTATCTGAACCTAGACACAT… WD40 repeat domain-containing protein, IS630 family transposase
2292_ssl0769-sacB GTGGGGGTTTTAATCGGGATTATGC… transposase
2293_sll0402-sacB ATGCGACTAACCCAGCGAGTTAGCC… aspartate aminotransferase aspC
2294_sll0401-sacB GTGAATTATATGATGACTGATAACG… citrate synthase gltA
2295_sll0400-codA ATGGAACTTTACCTTATTCGTCACG… phosphohistidine phosphatase; sixA sixA
2296_slr0440-codA ATGGAAAAATACAACATCCAAGTTT… alpha/beta hydrolase
2297_slr0049-sacB ATGGCTAAAGTAATGATTGTGGGAG… saccharopine dehydrogenase family protein
2298_ssr0102-sacB ATGACTTCTGACCCCATTACCCTCC… thiamine biosynthesis protein ThiS thiS
2299_slr0050-sacB GTGGAAATTACTTTTCTTGGTACCA… ribonuclease Z
2300_sll0072-sacB ATGACTAATATTCCTTACCGAGAAA… helix-turn-helix domain-containing protein
2301_sll0071-sacB ATGCGTAAACTTTACTTTTTATTAC… glycosyltransferase
2302_sll0070-sacB ATGCAAAATCTCACCGCAACACTGC… phosphoribosylglycinamide formyltransferase purU
2303_slr0051-sacB ATGATGGGGAAAATTGAAAAATTTG… carbonic anhydrase icfA
2304_sll0069-sacB ATGACCTATTGTTTGGGTTTAATTA… hypothetical protein
2305_sll0068-sacB ATGCCAGAGGGAATTTATTCTGCCT… NACHT domain-containing protein
2306_sll0067-sacB ATGATCAAACTATACGGTGCCCCCC… glutathione S-transferase gst
2307_sll0066-codA ATGGCTGATCGATTTTCTCCATCAG… hypothetical protein
2308_sll0065-sacB GTGGAATTTTACCCCAATGGCCACC… acetolactate synthase ilvN
2309_ssr0109-sacB ATGAGTGATTTACCCACCCCGGAAG… Cyanobacterial Signature Protein
2310_slr0053-sacB ATGGCCCCTACCTCTGTTAACAAGA… rRNA maturation RNase YbeY
2311_slr0054-sacB ATGAAATCGGTATATCCCATGTCTT… diacylglycerol kinase dgkA
2312_slr0055-sacB GTGTATCGCAACGATCAAATTAGCC… anthranilate synthase component II trpG
2313_slr0056-codA/sacB ATGTCTGACACACAAAATACCGGCC… chlorophyll a synthase chlG
2314_sll0064-sacB ATGTTGCTCAAAAGTGCTTTTACTT… amino acid ABC transporter substrate-binding protein
2315_sll0063-sacB ATGACAGAACCAGCCAACAATCATC… AI-2E family transporter
2316_sll0062-sacB ATGCCCTCCTTGGGCTGTTGCTATA… hypothetical protein
2317_slr0058-sacB ATGGTTTTTGCTATGGTTGACGAGA… hypothetical protein
2318_slr0059-sacB ATGTTGCTGTTCGTTATCTGTTTTA… hypothetical protein
2319_slr0060-sacB ATGAAACCCAAAGTGGCGATCGCCT… patatin-like phospholipase family protein
2320_slr0061-sacB ATGCTAAAAAAAATTTTCATTCTCG… hypothetical protein
2321_sll0060-sacB ATGAATTGGCCCAATATGCCCCCTG… AI-2E family transporter
2322_sll0058-sacB ATGGGCAAAGTCATTGGCATTGATT… DnaK protein dnaK
2323_sll0057-sacB ATGAACGAAGATCAAGTTTCCCTCG… heat shock protein; GrpE grpE
2324_slr0063-sacB ATGACATCTTCCTCCTCTTCCAAGA… general secretion pathway protein E gspE/pilB1
2325_slr0064-sacB ATGCCAGACACTAGCGCCTTTTCCG… RNA methyltransferase
2326_slr0065-sacB ATGACCGATCGCCGTCAGTATGCTC… DUF938 domain-containing protein
2327_slr0066-codA/sacB ATGATCTCAGACCAAACCCATATGC… riboflavin biosynthesis protein; ribD ribD
2328_sll0055-sacB ATGACCCCCAGCCTATTGCCTCCCC… processing protease
2329_slr0067-sacB ATGCTAACCACCGATGCCGTTTTAA… put. ATPase
2330_sll0053-sacB ATGCAATTCGCCAAAATTTTAATTG… biotin carboxylase accC
2331_slr0069-sacB ATGACTTCCCCACCAACTCCAGACC… hypothetical protein
2332_sll0051-sacB ATGGTTACCGAACAAGACCGTGAGT… nucleoside deaminase
2333_slr0070-sacB GTGATGAAAACTGTTTTCTTTGGTA… methionyl-tRNA formyltransferase fmt
2334_slr0467-sacB ATGAGCGATCGCATCACGCCGGCAG… conserved component of ABC transporter for natural amino acids natA
2335_slr0468-sacB ATGGCACTCCCGAGCAAATTCAATC… hypothetical protein
2336_slr0469-sacB ATGTCTCGTTATAGAGGACCTCGTC… 30S ribosomal protein S4 rps4
2337_sll0462-sacB ATGGCAGGGGAGGAAAATACCATGA… AI-2E family transporter
2338_sll0461-sacB ATGACTAGCGACGATGCCGCGGCCG… gamma-glutamyl phosphate reductase proA
2339_slr0473-sacB ATGGCCACCACCGTACAACTCAGCG… phytochrome phy/cph1
2340_slr0474-sacB ATGTCCGACGAATCTAATCCCCCCA… CheY subfamily
2341_sll0459-sacB ATGACTTCTGACCTCTTTTCCCTCC… excinuclease ABC subunit B uvrB
2342_slr0476-sacB ATGACTGAGGAACAGCAGGGGCCCA… hypothetical protein
2343_sml0002-sacB ATGACCCCTTCTTTAGCAAACTTTC… photosystem II PsbX protein psbX
2344_slr0477-sacB ATGTCGGCTATGTCAGATTTGTCGA… phosphoribosylglycinamide formyltransferase purN
2345_slr0479-sacB ATGACTGCCCCCTATTTTTCCCTCA… PD-(D/E)XK nuclease family protein
2346_slr0480-codA ATGACTTTTAGTGAAGAATTTGAAT… AAA family ATPase ycf46
2347_slr0482-sacB ATGGCCAGTTCCCCCAGACCCACTG… methyltransferase domain-containing protein
2348_slr0483-sacB GTGGGCCGTAAACATTCAATCCGAA… methyltransferase domain-containing protein curT
2349_slr0484-sacB ATGAGCAACTCCCCGTCTGTTCTTA… sensory transduction histidine kinase hik26
2350_slr0487-sacB ATGGAGTTTAAAAATTTTTTCGATG… PAS domain-containing protein
2351_slr0488-sacB GTGTCTCCGTCTGGTAAATCGTCCC… murein biosynthesis integral membrane protein MurJ
2352_slr0489-sacB ATGGCAACCTTCTTGGCCCTATTAC… hypothetical protein
2353_slr0491-sacB ATGGCGAGCCCTAATTTATTGCCCG… gamma-glutamylcyclotransferase
2354_slr0492-sacB ATGTCTATGCAATTCATGGAAACTG… O-succinylbenzoic acid--CoA ligase menE
2355_slr0493-sacB ATGATTGCCACTCCCCTTGCCCAAG… phosphomannose isomerase rfbM
2356_sll0456-codA ATGGGCATGGCTAGTTTAAAACGCA… NAD(P)-dependent oxidoreductase
2357_sll0455-sacB GTGACAGTTAAAATTGGTTTACTCG… homoserine dehydrogenase thrA
2358_slr0495-sacB GTGCTCCCCCAGCCCCAAATTTGGC… lipopeptide antibiotics iturin a biosynthesis protein
2359_slr0496-sacB ATGGAAAATCCCCTGCAAAAAGTGG… hypothetical protein
2360_sll0454-sacB ATGACTATTTCTTTGGAAGCCGATT… phenylalanyl-tRNA synthetase alpha chain pheS
2361_sll0691-sacB ATGGGCGCATCTTTTCGGGCAGAAC… low-complexity tail membrane protein
2362_sll0690-sacB GTGCAGTATCCTTATTTGCTAGACA… virulence associated protein C vapC
2363_ssl1300-sacB ATGAAAAGATCTGTAACTATGTCTT… antitoxin
2364_sll0689-sacB ATGTTTATGAACCCATTGCTCCCTC… Na/H+ antiporter
2365_sll0688-sacB ATGGAATCCCTAAACCCGATCTCCC… hypothetical protein
2366_sll0687-sacB ATGCAAGTCGTGGTGCAGGATGACG… sigma-70 family RNA polymerase sigma factor
2367_sll0686-sacB ATGTTAAATCGTGCCCGTCGCTCCT… cytochrome c biogenesis protein CcdA ccdA
2368_sll0685-sacB GTGAAAACTACCCGCTCCTTTTTAA… thioredoxin family protein
2369_sll0684-sacB ATGGTAGTTTCCAACGGCGTGGCCA… phosphate transport ATP-binding protein; PstB pstB
2370_sll0683-sacB ATGAACGAATCCCCGGCGCAACCAT… phosphate transport ATP-binding protein; PstB pstB
2371_sll0682-sacB ATGACCGCCGTTAACCTCCAAAAGA… phosphate transport system permease protein; PstA pstA
2372_sll0681-sacB ATGACCACTGCGCCCTATTCCCGGA… phosphate transport system permease protein; PstC pstC
2373_sll0680-sacB ATGACTACTTTCAAGCAGATTAAAA… phosphate-binding periplasmic protein precursor pstS
2374_sll0679-sacB ATGTTTGATTTAAGTCGATTGAGCC… SphX protein precursor sphX
2375_slr0719-sacB ATGCCACAACGTCTGCCCAGGGGAC… pentapeptide repeat-containing protein
2376_slr0628-sacB ATGGCAAAAAAATCCATGATCGAGC… 30S ribosomal protein S14 rps14
2377_sll0617-sacB ATGGGATTATTTGACCGTTTAGGCC… chloroplast membrane-associated 30 kD protein vipp1
2378_slr0630-sacB ATGGCGATCGCCAAATTACCCCGTC… MBL fold metallo-hydrolase
2379_sll0616-sacB ATGTTAAAAGCCCTCTTTGGTGATC… preprotein translocase SecA subunit secA
2380_sll0615-sacB ATGCTGACCGCTTTTACTGCCGGAT… transmembrane protein FT27
2381_sll0614-sacB ATGTTTGATCCAACGGCAATTATTG… DUF4253 domain-containing protein
2382_sll0613-sacB ATGGCCATTAAACGTTCCGGCAACA… Holliday junction DNA helicase; RuvB ruvB
2383_slr0633-sacB ATGCAAACAACCAGTGACGTTCTCA… ThiG protein thiG
2384_slr0634-sacB ATGGCAACTACCGCTGATGAAGTTT… DUF3782 domain-containing protein
2385_slr0635-sacB ATGGCCCTTCCCTTTGACCTGGAGC… folate-binding protein
2386_sll0611-sacB ATGAATCCTGAATTTCATCCCCTCC… hypothetical protein
2387_slr0636-sacB ATGGAATGGTGGCGTCGCTGGTATT… adenosylcobinamide-GDP ribazoletransferase
2388_slr0637-sacB ATGACTGGAAAAGTTGCCGAAAGTG… hypothetical protein
2389_slr0638-sacB ATGACCATTACTTTCCAAGCTGTTA… glycyl-tRNA synthetase alpha chain glyQ
2390_slr0639-sacB ATGGTGAATTTGTTGTTTCTTTTTT… mechanosensitive ion channel
2391_slr0640-sacB ATGTTTCAGGCCACCCGTCGACGTT… sensory transduction histidine kinase
2392_sll0609-sacB GTGGATTTATCGTCAATCAGCCCAG… DUF3593 domain-containing protein
2393_sll0608-sacB GTGAATGCTCTCTCAATTCCCACTT… Ycf49-like protein
2394_slr0642-sacB GTGCTTGTTGCTATGTCCATGACCC… folate/biopterin family MFS transporter fbt
2395_slr0643-sacB ATGTGGCTTCTTTTGCTCATCCTTG… fbt
2396_sll0606-sacB GTGTTTGGTCGGTTGCCCTTAAGTG… hypothetical protein
2397_slr0644-sacB ATGGGAAAATGTTCTTATCGATTCA… tRNA dihydrouridine synthase DusB dusB
2398_sll0603-sacB ATGGTTGATTTCACTAACCCCAATA… 2-succinyl-6-hydroxy-2 4-cyclohexadiene-1-carboxylate synthase menD
2399_sll0602-sacB GTGCCGACTGTCCACTGCTCCAACT… serine/threonine-protein phosphatase
2400_slr0645-sacB ATGAGCGCTGAAGCTGTCATCGAAA… VWA domain-containing protein