Plasmids and Cultures

This database contains entries for 3,572 known and predicted gene coding sequences in Synechocystis sp PCC 6803 based on the Kazusa genome sequence and nomenclature (http://genome.microbedb.jp/cyanobase/GCA_000009725.1). Plasmids for generating marked mutants and mutant strains can be searched for by gene Name/Accession (e.g. 'sll1226' or '1513_sll1226-sacB'),  gene homology (e.g. 'hydrogenase large subunit'), Gene ID (e.g. hoxH), or by a portion of the gene coding sequence Sequence (CDS).

Please note, the library is still being completed. Plasmids and/or marked mutants may not be available. Users can also search for available materials by Plasmids made or Mutant made.

Plasmids, mutants and the unmarking spacer plasmid pUC19K-UL are currently available on request. Regardless of the segregation status of the mutant, open reception of a cyanobacterial mutant strain we recommend 1-2 cycles of restreaking on a selection plate containing kanamycin (100 μg/ml).

Name Sort ascending CDS Gene Homology Gene ID
2372_sll0681-sacB ATGACCACTGCGCCCTATTCCCGGA… phosphate transport system permease protein; PstC pstC
2371_sll0682-sacB ATGACCGCCGTTAACCTCCAAAAGA… phosphate transport system permease protein; PstA pstA
2370_sll0683-sacB ATGAACGAATCCCCGGCGCAACCAT… phosphate transport ATP-binding protein; PstB pstB
2369_sll0684-sacB ATGGTAGTTTCCAACGGCGTGGCCA… phosphate transport ATP-binding protein; PstB pstB
2368_sll0685-sacB GTGAAAACTACCCGCTCCTTTTTAA… thioredoxin family protein
2367_sll0686-sacB ATGTTAAATCGTGCCCGTCGCTCCT… cytochrome c biogenesis protein CcdA ccdA
2366_sll0687-sacB ATGCAAGTCGTGGTGCAGGATGACG… sigma-70 family RNA polymerase sigma factor
2365_sll0688-sacB ATGGAATCCCTAAACCCGATCTCCC… hypothetical protein
2364_sll0689-sacB ATGTTTATGAACCCATTGCTCCCTC… Na/H+ antiporter
2363_ssl1300-sacB ATGAAAAGATCTGTAACTATGTCTT… antitoxin
2362_sll0690-sacB GTGCAGTATCCTTATTTGCTAGACA… virulence associated protein C vapC
2361_sll0691-sacB ATGGGCGCATCTTTTCGGGCAGAAC… low-complexity tail membrane protein
2360_sll0454-sacB ATGACTATTTCTTTGGAAGCCGATT… phenylalanyl-tRNA synthetase alpha chain pheS
2359_slr0496-sacB ATGGAAAATCCCCTGCAAAAAGTGG… hypothetical protein
2358_slr0495-sacB GTGCTCCCCCAGCCCCAAATTTGGC… lipopeptide antibiotics iturin a biosynthesis protein
2357_sll0455-sacB GTGACAGTTAAAATTGGTTTACTCG… homoserine dehydrogenase thrA
2356_sll0456-codA ATGGGCATGGCTAGTTTAAAACGCA… NAD(P)-dependent oxidoreductase
2355_slr0493-sacB ATGATTGCCACTCCCCTTGCCCAAG… phosphomannose isomerase rfbM
2354_slr0492-sacB ATGTCTATGCAATTCATGGAAACTG… O-succinylbenzoic acid--CoA ligase menE
2353_slr0491-sacB ATGGCGAGCCCTAATTTATTGCCCG… gamma-glutamylcyclotransferase
2352_slr0489-sacB ATGGCAACCTTCTTGGCCCTATTAC… hypothetical protein
2351_slr0488-sacB GTGTCTCCGTCTGGTAAATCGTCCC… murein biosynthesis integral membrane protein MurJ
2350_slr0487-sacB ATGGAGTTTAAAAATTTTTTCGATG… PAS domain-containing protein
2349_slr0484-sacB ATGAGCAACTCCCCGTCTGTTCTTA… sensory transduction histidine kinase hik26
2348_slr0483-sacB GTGGGCCGTAAACATTCAATCCGAA… methyltransferase domain-containing protein curT
2347_slr0482-sacB ATGGCCAGTTCCCCCAGACCCACTG… methyltransferase domain-containing protein
2346_slr0480-codA ATGACTTTTAGTGAAGAATTTGAAT… AAA family ATPase ycf46
2345_slr0479-sacB ATGACTGCCCCCTATTTTTCCCTCA… PD-(D/E)XK nuclease family protein
2344_slr0477-sacB ATGTCGGCTATGTCAGATTTGTCGA… phosphoribosylglycinamide formyltransferase purN
2343_sml0002-sacB ATGACCCCTTCTTTAGCAAACTTTC… photosystem II PsbX protein psbX
2342_slr0476-sacB ATGACTGAGGAACAGCAGGGGCCCA… hypothetical protein
2341_sll0459-sacB ATGACTTCTGACCTCTTTTCCCTCC… excinuclease ABC subunit B uvrB
2340_slr0474-sacB ATGTCCGACGAATCTAATCCCCCCA… CheY subfamily
2339_slr0473-sacB ATGGCCACCACCGTACAACTCAGCG… phytochrome phy/cph1
2338_sll0461-sacB ATGACTAGCGACGATGCCGCGGCCG… gamma-glutamyl phosphate reductase proA
2337_sll0462-sacB ATGGCAGGGGAGGAAAATACCATGA… AI-2E family transporter
2336_slr0469-sacB ATGTCTCGTTATAGAGGACCTCGTC… 30S ribosomal protein S4 rps4
2335_slr0468-sacB ATGGCACTCCCGAGCAAATTCAATC… hypothetical protein
2334_slr0467-sacB ATGAGCGATCGCATCACGCCGGCAG… conserved component of ABC transporter for natural amino acids natA
2333_slr0070-sacB GTGATGAAAACTGTTTTCTTTGGTA… methionyl-tRNA formyltransferase fmt
2332_sll0051-sacB ATGGTTACCGAACAAGACCGTGAGT… nucleoside deaminase
2331_slr0069-sacB ATGACTTCCCCACCAACTCCAGACC… hypothetical protein
2330_sll0053-sacB ATGCAATTCGCCAAAATTTTAATTG… biotin carboxylase accC
2329_slr0067-sacB ATGCTAACCACCGATGCCGTTTTAA… put. ATPase
2328_sll0055-sacB ATGACCCCCAGCCTATTGCCTCCCC… processing protease
2327_slr0066-codA/sacB ATGATCTCAGACCAAACCCATATGC… riboflavin biosynthesis protein; ribD ribD
2326_slr0065-sacB ATGACCGATCGCCGTCAGTATGCTC… DUF938 domain-containing protein
2325_slr0064-sacB ATGCCAGACACTAGCGCCTTTTCCG… RNA methyltransferase
2324_slr0063-sacB ATGACATCTTCCTCCTCTTCCAAGA… general secretion pathway protein E gspE/pilB1
2323_sll0057-sacB ATGAACGAAGATCAAGTTTCCCTCG… heat shock protein; GrpE grpE
2322_sll0058-sacB ATGGGCAAAGTCATTGGCATTGATT… DnaK protein dnaK
2321_sll0060-sacB ATGAATTGGCCCAATATGCCCCCTG… AI-2E family transporter
2320_slr0061-sacB ATGCTAAAAAAAATTTTCATTCTCG… hypothetical protein
2319_slr0060-sacB ATGAAACCCAAAGTGGCGATCGCCT… patatin-like phospholipase family protein
2318_slr0059-sacB ATGTTGCTGTTCGTTATCTGTTTTA… hypothetical protein
2317_slr0058-sacB ATGGTTTTTGCTATGGTTGACGAGA… hypothetical protein
2316_sll0062-sacB ATGCCCTCCTTGGGCTGTTGCTATA… hypothetical protein
2315_sll0063-sacB ATGACAGAACCAGCCAACAATCATC… AI-2E family transporter
2314_sll0064-sacB ATGTTGCTCAAAAGTGCTTTTACTT… amino acid ABC transporter substrate-binding protein
2313_slr0056-codA/sacB ATGTCTGACACACAAAATACCGGCC… chlorophyll a synthase chlG
2312_slr0055-sacB GTGTATCGCAACGATCAAATTAGCC… anthranilate synthase component II trpG
2311_slr0054-sacB ATGAAATCGGTATATCCCATGTCTT… diacylglycerol kinase dgkA
2310_slr0053-sacB ATGGCCCCTACCTCTGTTAACAAGA… rRNA maturation RNase YbeY
2309_ssr0109-sacB ATGAGTGATTTACCCACCCCGGAAG… Cyanobacterial Signature Protein
2308_sll0065-sacB GTGGAATTTTACCCCAATGGCCACC… acetolactate synthase ilvN
2307_sll0066-codA ATGGCTGATCGATTTTCTCCATCAG… hypothetical protein
2306_sll0067-sacB ATGATCAAACTATACGGTGCCCCCC… glutathione S-transferase gst
2305_sll0068-sacB ATGCCAGAGGGAATTTATTCTGCCT… NACHT domain-containing protein
2304_sll0069-sacB ATGACCTATTGTTTGGGTTTAATTA… hypothetical protein
2303_slr0051-sacB ATGATGGGGAAAATTGAAAAATTTG… carbonic anhydrase icfA
2302_sll0070-sacB ATGCAAAATCTCACCGCAACACTGC… phosphoribosylglycinamide formyltransferase purU
2301_sll0071-sacB ATGCGTAAACTTTACTTTTTATTAC… glycosyltransferase
2300_sll0072-sacB ATGACTAATATTCCTTACCGAGAAA… helix-turn-helix domain-containing protein
2299_slr0050-sacB GTGGAAATTACTTTTCTTGGTACCA… ribonuclease Z
2298_ssr0102-sacB ATGACTTCTGACCCCATTACCCTCC… thiamine biosynthesis protein ThiS thiS
2297_slr0049-sacB ATGGCTAAAGTAATGATTGTGGGAG… saccharopine dehydrogenase family protein
2296_slr0440-codA ATGGAAAAATACAACATCCAAGTTT… alpha/beta hydrolase
2295_sll0400-codA ATGGAACTTTACCTTATTCGTCACG… phosphohistidine phosphatase; sixA sixA
2294_sll0401-sacB GTGAATTATATGATGACTGATAACG… citrate synthase gltA
2293_sll0402-sacB ATGCGACTAACCCAGCGAGTTAGCC… aspartate aminotransferase aspC
2292_ssl0769-sacB GTGGGGGTTTTAATCGGGATTATGC… transposase
2291_slr0439-sacB ATGAGTTATCTGAACCTAGACACAT… WD40 repeat domain-containing protein, IS630 family transposase
2290_sll0403-codA ATGTCATCTTTTAATCAGATAACTA… hypothetical protein
2289_slr0438-codA ATGAGCGAAGATTCCCCCAAACCAG… DUF3082 domain-containing protein
2288_sll0404-sacB ATGGCCATTTTCTCCCCCGTCAACG… glycolate oxidase subunit; GlcD glcD
2287_sll0405-sacB ATGACCCAAAGCTATGGAGATACCA… PQ-loop repeat-containing protein
2286_sll0406-sacB ATGAGTATTATTTGTCTTGATACAA… PIN domain-containing protein
2285_slr0436-sacB GTGCCGACTTCCCCAACAATGACTA… carbon dioxide concentrating mechanism protein; CcmK ccmK
2284_slr0435-codA GTGGCTATTAACTTTACGGAACTGC… biotin carboxyl carrier protein of acetyl-CoA carboxylase, accB accB
2283_slr0434-codA ATGATATCCAGTAACGATTTTCGCA… elongation factor P; efp efp
2282_sll0408-codA ATGGGGGCGTTGAAGTGGGAAAATT… peptidyl-prolyl cis-trans isomerase
2281_sll0409-sacB ATGGATAAACCCTATCACGTTAAAT… o-succinylbenzoate synthase
2280_sll0410-codA GTGAGTGATTCCCCCAAGCCCCAAT… acyl-CoA thioesterase
2279_sll0412-sacB ATGCCCTTGCCTTTGATGATGATTA… DUF445 family protein
2278_sll0413-codA GTGTTAACTTCGCCCATGTCTGATG… Cyanobacterial Signature Protein
2277_ssl0787-sacB ATGGCCAGCGGCACTGACCCCGGTT… hypothetical protein
2276_ssl0788-sacB GTGGAACTTTTTGACCTAGTGGAAG… hypothetical protein
2275_slr0431-codA/sacB GTGCGACCAAAATTTTTTTCTAGGA… SIMPL domain-containing protein
2274_sll0414-sacB ATGGTAGACAATAATCAAGCCCAGG… pentapeptide repeat-containing protein
2273_sll0415-sacB ATGCGTTTTCGATGTTACTTAATAT… ABC transporter
2272_sll0416-sacB ATGTCTAAACTTATTTCCTTTAAGG… 60kD chaperonin 2 groEL-2
2271_sll0191-sacB ATGAACAGGGGAGCAAAAGTAAAGA… hydroxylase
2270_slr0233-sacB ATGGCCGTCAAAAAACAGTTTGCTA… thioredoxin M trxQ
2269_slr0232-codA ATGGGTTGGGAATTTTTTTCGCTAG… DedA family protein
2268_sll0192-sacB ATGTTGCCGAAGATTCTACTGCTCA… hypothetical protein
2267_slr0231-codA ATGTTATTCCAAAGATTTTTGGACT… DNA-3-methyladenine glycosylase 2 family protein
2266_slr0230-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
2265_slr0229-sacB ATGAACGTTTCCAAAATTGCAGTTT… 3-hydroxyisobutyrate dehydrogenase, Tartronic semialdehyde reductase mmsB
2264_sll0194-sacB ATGTCAACCCAGCTTGATAACATCA… twin-arginine translocase subunit TatC TatC
2263_sll0195-codA ATGGCATCCTCCGTTGCAATTAGGG… ATP-dependent proteinase; BsgA bsgA
2262_slr0228-codA ATGAAATTTTCCTGGAGAACTGCCC… cell division protein; FtsH ftsH
2261_sll0198-sacB ATGGGTCAAACCATCACTCCGCCTC… Uma2 family endonuclease
2260_slr0226-sacB ATGAATCCTTGCAAATTTTTTCGTT… hypothetical protein
2259_sll0199-codA ATGTCTAAAAAGTTTTTAACAATCC… plastocyanin petE
2258_sll0200-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
2257_sll0201-sacB ATGTTAAGAGAACTAATTAAGCTCT… transposase
2256_slr0224-codA ATGGATCATTTATTTTGGATTTATA… sterol desaturase family protein, IS630 family transposase
2255_sll0202-sacB ATGACCCTTCGATCGCCAGTGGAAT… glucose inhibited division protein A gidA
2254_slr0222-codA ATGCCTATCATTCCTAGCCCCAAAG… hybrid sensory kinase
2253_sll0204-codA ATGACCACTTTAACGCCCATCCATG… glucose inhibited division protein A gidA
2252_sll0205-codA ATGCTACTGGACACCCACACGCTTT… type II toxin-antitoxin system VapC family toxin
2251_slr0220-codA ATGCCCCTGCAAACCTTTCTATTTG… glycyl-tRNA synthetase beta chain glyS
2250_sll0207-sacB ATGGTCAGTGTTGACCGATTCCTGC… glucose-1-phosphate thymidylyltransferase rfbA
2249_sll0208-sacB ATGCCCGAGCTTGCTGTCCGCACCG… Cyanobacterial Signature Protein aldehyde oxygenase (deformylating)
2248_sll0209-sacB ATGTTTGGTCTTATTGGTCATCTCA… long-chain acyl-[acyl-carrier-protein] reductase
2247_ssr0349-codA ATGTTGGTGCCCATTCTCATTTTTG… hypothetical protein
2246_slr0217-sacB ATGGCAGACGCCATTGAAGTTAAAA… hypothetical protein
2245_slr0216-codA ATGGCTTTTCCTATCCTCGTCACCG… cobinamide kinase/cobinamide phosphate guanylyltransferase cobU
2244_sll0210-sacB ATGTCCCCCCGCCAATTAAATTTTC… undecaprenyl-diphosphate phosphatase
2243_slr0214-sacB ATGGCCAGACCCATTGCCATCGACT… cytosine-specific methyltransferase
2242_slr0213-codA GTGACTACCCAAATCCCCGTTCCCC… GMP synthetase; guaA guaA
2241_sll0002-codA GTGTTTAAATCCTTCTCCCGCAAAC… penicillin-binding protein 1A ponA
2240_slr0021-codA/sacB ATGATTTGGCCCTTCAAAACCAGCA… protease IV; sppA sppA
2239_slr0020-codA GTGCAATGTAGCTTGGTTGAGGTGT… DNA recombinase recG
2238_sll0005-codA ATGTCTCCAGCCCCCATGCCCGTTA… ABC1-like
2237_sll0006-sacB ATGAGTCTGAATTGGATTAGTCGCG… aspartate aminotransferase aspC
2236_sll0007-sacB ATGGTTTTAGCCTCAGCAAAAGTAC… Uma2 family endonuclease
2235_sll0008-sacB ATGGTGTCAATATTTCATCAATTGG… hypothetical protein
2234_slr0019-sacB ATGGTGTTTCGATTCCCCTCGCCAG… fimbrial biogenesis outer membrane usher protein
2233_sll0010-codA GTGATTAAAATTCGAGGCTTTCCGG… hypothetical proteins
2232_slr0018-sacB ATGGTAAATTCCCACCGCCTTGAAA… fumarase fumC
2231_slr0017-codA GTGCTTCAAGTTGCTACTCCTACCG… UDP-N-acetylglucosamine 1-carboxyvinyltransferase murZ
2230_slr0016-codA ATGTATGACGACGACCAGCGCCGCG… RDD family protein
2229_ssl0020-codA ATGGCATCCTATACCGTTAAATTGA… ferredoxin petF
2228_slr0015-sacB ATGCGTATATTTATTAGCACGGGGG… lipid A disaccharide synthase lpxB
2227_sll0012-sacB ATGATAATTCGAGAATTTTACAGCA… transposase
2226_slr0014-sacB ATGGAATGGAACGAGAGTCTTCTCC… Mg2+ transport ATPase mgtC
2225_slr0013-sacB ATGAAGCTCATCGATTCCCGTGGCA… flavin reductase family protein
2224_slr0012-sacB ATGAAAACTTTACCCAAAGAGCGCC… ribulose bisphosphate carboxylase small subunit rbcS
2223_slr0011-codA GTGTTCATGCAAACTAAGCACATAG… unknown function rbcX
2222_slr0009-codA ATGGTACAAGCCAAAGCAGGGTTTA… ribulose-15-bisphosphate carboxylase/oxygenase large subunit rbcL
2221_slr0008-sacB ATGGGTAAACGGACAAGGCGGTTTT… carboxyl-terminal processing protease ctpA
2220_slr0007-codA ATGGCTCTTTCCCCCGCAGACGTTA… nucleotidyltransferase
2219_slr0006-codA ATGGTTACACTAGATAAAACTGCAA… Glutamate/glyoxylate aminotransferase
2218_sll0016-codA ATGATTAAGCAATTTTTCCCGTTAT… membrane-bound lytic transglycosylase A mltA
2217_sll0017-sacB ATGCCCGGTGGTGTCAGTTCCCCGG… glutamate-1-semialdehyde 21-aminomutase hemL
2216_sll0018-sacB ATGGCTCTTGTACCAATGAGACTGC… fructose-16-bisphosphate aldolase cbbA
2215_sll0019-sacB ATGGTGAAACGCATTTCTATCCTCG… 1-deoxy-D-xylulose-5-phosphate reductoisomerase dxr
2214_sll0020-sacB ATGTTTGAACGCTTTACAGAAAAAG… ATP-dependent Clp protease regulatory subunit clpC
2213_sll0021-codA ATGTTAAAAGTCCTGCATCTTTCTG… exonuclease SbcCD subunit D
2212_slr0001-sacB GTGCTAGACGAACAAGCAAAGAAAA… flavin reductase family protein
2211_sll0022-sacB ATGGAACCAAATCATTTCCCCGGTA… DUF1190 domain-containing protein
2210_sll0023-sacB ATGCAACCGATAAAAATTAGTCGTC… glutathionylspermidine synthase preATP-grasp family protein
2209_sll0024-sacB GTGAAAATTACTTGTTTAAAACATA… hypothetical protein
2208_sll0309-sacB ATGGTCAATCTTCTCGTAATTAGTT… hypothetical protein
2207_sll0310-codA ATGAGTTTGAGTTACCGTATTCGTC… N-acetyltransferase
2206_slr0358-sacB ATGACCCCATGGACAATTTGGTTTA… hypothetical protein
2205_slr0357-sacB ATGGGAGCTATCCAAGCCATTCGTG… histidyl-tRNA synthetase hisS
2204_sll0312-codA ATGCGCAATCCCCTCCGTTGGCTCC… OppB in a binding protein-dependent transport system
2203_slr0356-sacB ATGACTAGACCAATTTCCCTGGGCT… DUF2808 domain-containing protein
2202_slr0355-sacB ATGGAAAACAATTCTCTGGCACCTT… biotin biosynthesis bioU
2201_ssl0601-sacB ATGACTCAAGTTGTTGTAGGTCAAA… 30S ribosomal protein S21 rps21
2200_slr0354-sacB ATGCTGTGTTTAAACGACGTTTGCT… ABC transporter
2199_sll0314-sacB ATGTTGGTTTTCCTCACCCGTTTTA… hypothetical protein
2198_slr0353-sacB ATGAAAATAGATTATAAATTAACTC… hypothetical protein
2197_sll0315-sacB ATGATATCAAATTTTGGACATATTG… transposase
2196_slr0352-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
2195_sll0317-sacB ATGGTTGGAACTGGAAAGAATAAAA… transposase
2194_slr0351-sacB ATGGCCAGTTCGGTGATCGCCGCCA… SAM-dependent methyltransferase
2193_slr0350-sacB ATGATAATTCGAGAATTTTACAGCA… Cyanobacterial Signature Protein transposase
2192_sll0318-sacB ATGAACCGCCAGGGAACCTATCAAG… DUF3318 domain-containing protein
2191_slr0348-sacB ATGGATACCAAAGCTTTTAAACGGT… 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
2190_sll0319-sacB ATGAACTGGAAATTTTTCCCACACC… DUF3747 domain-containing protein
2189_sll0320-sacB ATGCCCTCTGCCGATACCCTGAGTC… ribonuclease D rnd
2188_slr0347-sacB ATGACCACTCTGTACAATCTGCTCG… ABC transporter permease
2187_sll0321-codA ATGGTTCAAGTTGGTGCGGCGGCAA… FAD-dependent oxidoreductase
2186_sll0322-sacB ATGTTAAAAACCGTTGCCATACAGG… transcriptional regulatory protein; HypF hypF
2185_slr0346-sacB ATGTCTCTGCTTCCCCATCGTCAAA… ribonuclease III rnc
2184_slr0345-sacB ATGACGAATACTAAGACTACCCCCA… hypothetical protein
2183_slr0344-codA ATGAAAATTGTTATTGATGGTATTT… mannosyl transferase; rfbW rfbW
2182_slr0343-sacB ATGAGTATTATCAAAAAGCCGGATC… cytochrome b6-f complex subunit 4 petD
2181_slr0342-codA ATGTTTTCAAAAGAAGTCACCGAAT… cytochrome b6; petB petB
2180_sll0325-sacB ATGCTCGCTAAATATTTTTCTGAAC… hypothetical protein
2179_slr0341-sacB ATGAGCAATTCCAGTGGATCCCGTC… amino acid ABC transporter substrate-binding protein
2178_slr0784-sacB GTGATGAAGCTTAGTCAGTGGTTAG… AI-2E family transporter
2177_slr0783-codA GTGCGAAAAATCATTATTGCGGGCA… triosephosphate isomerase tpi
2176_sll0749-sacB GTGGAAAAAATCATGAGCGAACAAA… hypothetical protein
2175_sll0750-sacB ATGTCCTCCTCCTCTGAACTTGGTA… sensory transduction histidine kinase hik8/sarA
2174_slr0782-sacB GTGGTGATACGATCAGGCAAAACTA… amine oxidase
2173_sll0751-sacB ATGACAGCAGGACGAAACCAGCGCC… Substrate binding subunit of ER-derived-lipid transporter from the PLN03094 super family ycf22