Plasmids and Cultures

This database contains entries for 3,572 known and predicted gene coding sequences in Synechocystis sp PCC 6803 based on the Kazusa genome sequence and nomenclature (http://genome.microbedb.jp/cyanobase/GCA_000009725.1). Plasmids for generating marked mutants and mutant strains can be searched for by gene Name/Accession (e.g. 'sll1226' or '1513_sll1226-sacB'),  gene homology (e.g. 'hydrogenase large subunit'), Gene ID (e.g. hoxH), or by a portion of the gene coding sequence Sequence (CDS).

Please note, the library is still being completed. Plasmids and/or marked mutants may not be available. Users can also search for available materials by Plasmids made or Mutant made.

Plasmids, mutants and the unmarking spacer plasmid pUC19K-UL are currently available on request. Regardless of the segregation status of the mutant, open reception of a cyanobacterial mutant strain we recommend 1-2 cycles of restreaking on a selection plate containing kanamycin (100 μg/ml).

Name CDS Gene Homology Gene ID Sort descending
0823_slr2070-sacB GTGCTAAATGTCCGGAGACTCCACC… DUF1868 domain-containing protein
0633_slr1394-sacB ATGCAAGATTTTGGCGCAGTGTTCC… divergent PAP2 family protein
0507_slr1851-sacB ATGAAAACTATGGATGCCCAGGAAA… pentapeptide repeat-containing protein
0571_sll0998-sacB ATGTCGGATATCCCGTTCACGCTGG… LysR transcriptional regulator
0445_sll1500-sacB ATGTTGACAGTTTATACCCAGTCTG… TIGR00303 family protein
0319_slr0978-sacB GTGCTATTGATTACGATCGCCTTTT… hypothetical protein
0003_slr0613-sacB ATGTCCTATCTAATCGCTGTGGTAG… Cyanobacterial Signature Protein
0129_slr0244-sacB ATGCTTAGCAAAATTTTATACGCAG… universal stress protein
0193_sll1033-sacB ATGCTGATCTGTCTCCAGTGCTCCG… serine/threonine phosphatase
3499_slr6044-sacB ATGAAGTTCTCAATCCCCACCAATC… hypothetical protein
3563_slr6108-sacB ATGCTTGACTTCTCAGCAATTTCTG… hypothetical protein
3437_ssl5114-sacB ATGGCAACCGTTACTGATACAGACC… hypothetical protein
3247_ssr7079-sacB ATGCAACGCAGAAGTACCCAAAGCC… No conserved domains
3311_slr8037-sacB GTGTTTCGATGGTTTATCGCTGCGA… GNAT family N-acetyltransferase
3121_slr1183-sacB ATGTGGGATGAAAGATTTAGCCAGT… class I SAM-dependent methyltransferase
2995_slr1566-sacB ATGGTCACCTTTGTCTTGGCAATTA… glycosyltransferase
3059_slr1652-sacB ATGGGCATTGAGCAAAATAATCCTA… phytol kinase
2869_sll0499-sacB ATGGATGGGGAAGGTAATAAGTTGG… tetratricopeptide repeat protein
2933_sll1334-sacB ATGTTTGTCAATCAACATGGTTACA… GAF domain-containing sensor histidine kinase
2743_slr0800-sacB GTGAAAGGACGAAAGTGTCACCTAA… transposase
2617_slr0510-sacB GTGATTGCACAAATTAATCCACCAC… mechanosensitive ion channel
2681_slr0111-sacB ATGGCCAGAAAAAGCTTATCGGATC… hypothetical protein
2491_slr0907-sacB ATGGTCGAATTAACTGAAAATCACT… FkbM family methyltransferase
2365_sll0688-sacB ATGGAATCCCTAAACCCGATCTCCC… hypothetical protein
2113_slr0360-codA/sacB ATGAGTGCTACGGCGATCGCCCCCC… NCS2 family permease
1987_sll0141-sacB ATGAACAAGTACATCCCCCACCAAC… efflux RND transporter periplasmic adaptor subunit
2051_slr0320-sacB ATGATCGATCGCCTTTTGTACGTTC… B12-binding domain-containing radical SAM protein
1861_slr1628-sacB ATGGCTACTCTCCAGGATTCCCGGG… DUF2237 family protein
1925_sll0263-sacB ATGATCGAAGCCTTTCTGTTGCCCG… hypothetical protein
1799_ssl3044-sacB GTGACCATTACCTTTGTTAAAGAGC… hydrogenase component
1673_sll1380-sacB ATGACCACCGCAACCCATTTGCTGA… GUN4 domain-containing protein
1547_slr0816-sacB ATGGTTATACAGCCCATTTACTTAC… DUF177 domain-containing protein
1611_slr1964-sacB GTGGGCTTCTCGTTGCAGAGCAGGC… hypothetical protein
1485_slr2126-sacB ATGTTTTTCATGCAAAATACTAAGT… glycosyltransferase family 2 protein
1295_sll1949-sacB ATGAAGAAGCGATCTCTGTTCTCCC… hypothetical protein
1359_ssl0467-sacB ATGAGCACCCAAGATAAAGCCCGTG… hypothetical protein
1169_slr1815-sacB ATGACTCAAACTGAGATTATTAAGT… methyltransferase domain-containing protein
1107_sll1765-sacB GTGATAGTCTCCCTGGCAATTGTTG… hypothetical protein
0791_sll1123-sacB GTGCTATTTTTGTGCAACTTGCTTT… hypothetical protein
0855_sll1734-sacB ATGACTACCCTGACCCCAAAAGCTA… CO2 hydration protein
0665_sll1571-sacB ATGTCTAACCAACCTTCCCCCGGTG… hypothetical protein
0729_slr1150-sacB ATGGATATGAAATTTTTCATCCTTT… hypothetical protein
0603_slr1039-sacB ATGTTGGAAAGAATTCTGGAGCCAG… class I SAM-dependent methyltransferase
0287_slr1307-sacB ATGACCTACACAACCCAGCAATTGC… hypothetical protein
0351_slr1077-sacB ATGAGAATTTCACACATAATTGCAG… glycosyltransferase
0035_slr1494-sacB ATGCCACCTATCTATCAACTGCTTT… ABC transporter
0099_slr0731-sacB ATGACCCCAGAATTGAATCCTAATT… Cyanobacterial Signature Protein
0225_slr1788-sacB ATGGTTAGAGCTATACGTCCTCCCA… hypothetical protein
3531_sll6076-sacB ATGTTCGATAATCTGTGCAAATTTC… Rpn family recombination-promoting nuclease/putative transposase
3405_slr5082-sacB ATGTTTGACAATCTGTGCAAATTTC… Rpn family recombination-promoting nuclease/putative transposase
3469_slr6014-sacB ATGAGTTTACCAACTGAATTGATTG… hypothetical protein
3279_ssl8005-sacB ATGAAACGCCAATCTGTCCTGCAAT… DNA polymerase subunit beta
3343_ssr5020-sacB GTGATTCGTAACTTTAAAGATAAAG… hypothetical protein
3153_sll0564-sacB ATGCCTAGACAGGTTTGGATTTTTC… class I SAM-dependent methyltransferase
3217_slr7049-sacB ATGCTCATTGGTTATATGAGGGTTT… resolvase
3027_slr1586-sacB ATGCAAAAAGACTTGATAGCGCCGA… transposase
3091_sll0445-sacB ATGCAAAAAATTTATGCCATCGGTG… hypothetical protein
2965_slr0656-sacB ATGGCCAAGTCCCATTCTTCTGGTT… GNAT family N-acetyltransferase
2775_sll0672-sacB ATGAAAGCTTGTTGCTATTTTTTCA… cation-transporting ATPase; E1-E2 ATPase
2523_sll0543-sacB ATGTTTAGTTTGAAAAATTATTCCC… DUF2752 domain-containing protein
2271_sll0191-sacB ATGAACAGGGGAGCAAAAGTAAAGA… hydroxylase
2335_slr0468-sacB ATGGCACTCCCGAGCAAATTCAATC… hypothetical protein
2145_slr0771-sacB ATGGCAAACAGGATTAAATTTCATC… hypothetical protein
2209_sll0024-sacB GTGAAAATTACTTGTTTAAAACATA… hypothetical protein
2019_sll1853-sacB ATGGCGATGGAAGTGCAACTATTGT… DUF3750 domain-containing protein
2083_sll0177-sacB ATGCGTATTGTTGCCTACGTTTATT… recombinase family protein, metal-sensing transcriptional repressor
1893_slr0442-sacB ATGAATACTCGCTTTTTCCTCAATT… hypothetical protein
1767_sll1089-sacB ATGAAGTACTCACTATTTGTCGCTA… hypothetical protein
1831_slr0948-sacB ATGAGTGCAGATCCCAATCGTATTG… cofactor assembly of complex C subunit B
1515_ssl2420-sacB ATGAATACCCAATTAGTAGAATCCT… hypothetical protein
1579_slr1342-sacB ATGGCTGACCCCACCAAAATCATTG… four-carbon acid sugar kinase family protein
1389_slr2079-sacB ATGGGGATTGGCGTAAACTCAGATC… glutaminase
1454_slr1520-sacB ATGCGGGGCTTAGGCAATCGCCAGC… aldo/keto reductase
1328_sll1606-sacB ATGTTCGTTTTTCTCTCCAAACTTT… YdcF family protein
1202_slr1740-sacB GTGTTGCTAAATCTTCCCGCCACCG… peptide ABC transporter substrate-binding protein
1012_sll1267-sacB GTGGGGCAAATTTCAACTTTTACGG… hypothetical protein
0886_slr1540-sacB ATGCGCATTTTAATTATGGGAGGAA… NAD-dependent epimerase/dehydratase family protein
0950_sll1130-sacB ATGAATACAATTTACGAACAATTTG… type II toxin-antitoxin system PemK/MazF family toxin
0824_slr2071-sacB ATGTTTAAATTCCTTGCCAATAATT… hypothetical protein
0634_sll1286-codA GTGAGGCGATCGGGATTTTTCCCGC… TetR/AcrR family transcriptional regulator
0698_slr2027-sacB ATGGCGATGAGTAAGCCTAACTTAA… glycosyltransferase family 39 protein
0508_ssr3129-sacB ATGTGTTTTTTTATTATCCAAGAGG… hypothetical protein
0572_ssl1911-sacB ATGTCTACTCAACAACAGGCTCGCG… hypothetical protein
0446_slr1609-sacB GTGGACAGTGGCCATGGCGCTCAAT… long-chain-fatty-acid CoA ligase
0256_sll1652-sacB ATGTTAAACACTCTCTCCAAGAAGA… Predicted DNA binding protein, CopG/RHH family
0320_slr0980-sacB ATGGAGCAACTTTACGAAAGAGATT… DUF29 domain-containing protein
0004_sll0558-sacB ATGTCTGATAATTTGACCGAACTCT… Ycf53-like protein
3500_slr6045-sacB ATGCTCTTAACCAGTATGGATCAAA… hypothetical protein
3564_sll6109-sacB ATGAAAATTAACCGTCAGGGGCAGG… site-specific integrase
3374_slr5051-sacB ATGCCAACAGTTGAAACTGACTTGG… hypothetical protein
3438_slr5115-sacB ATGTTGCAGATAACTAAAAGCCTCA… aminoacyl-tRNA hydrolase
3248_slr7080-sacB ATGGTTAGTTATCATTTGCACCTGA… hypothetical protein
3312_slr8038-sacB ATGCCGTTTGAAGATGCCCTTGCGA… WD-repeat protein
3122_slr1184-sacB ATGGCATCAATTGTTTTCCGCTACC… rhodanese-like domain-containing protein
3186_ssr7018-sacB GTGAGGGGGCCAGATCCCTGCCAGA… No conserved domains
2996_sll1491-sacB ATGAACAACTATTTCCCTCGATTGA… beta transducin-like protein
2870_slr0544-sacB ATGCTTGATTCAAACTCGTTAGTGA… ABC transporter
2934_slr1429-sacB ATGGAAGCCAAGATCGAACAACGGC… hypothetical protein
2744_ssl1464-sacB ATGCCCGAAGTTACATTTGACATCG… MSMEG_0570 family nitrogen starvation response protein
2618_ssr0871-sacB GTGAGAAGCTTTGAATACTTTAAAT… transposase
2682_slr0112-sacB GTGGTCATGAGAAACGCTTTAACTA… hypothetical protein
2492_slr0909-sacB ATGATTAAACAATTATTAAAAAATA… FkbM family methyltransferase
2366_sll0687-sacB ATGCAAGTCGTGGTGCAGGATGACG… sigma-70 family RNA polymerase sigma factor
2304_sll0069-sacB ATGACCTATTGTTTGGGTTTAATTA… hypothetical protein
2114_slr0361-codA ATGGCTGAACGTATTCAAAAATTGC… RNA pseudouridine synthase
2178_slr0784-sacB GTGATGAAGCTTAGTCAGTGGTTAG… AI-2E family transporter
1862_slr1629-sacB ATGATTGACCAAATTATTGATGAAG… RNA pseudouridine synthase
1800_slr1687-sacB ATGGCAGAAGAAATTCTCAGAAACC… HEAT repeat domain-containing protein
1548_sll0811-sacB GTGCAACTGTTCCGAGTTACGGTGT… IS4 transposase
1422_slr2105-sacB ATGGCTCGGCTTACTGCTCTATTTC… hypothetical protein
1486_slr2127-sacB ATGGCCACCACCCCCCAAGAAGTCT… hypothetical protein
1360_sll0252-sacB ATGAAAAAATTAACGTCCTTTCCCT… SpoIID/LytB domain-containing protein
1170_slr1816-sacB ATGAAAATTGAAAAGCAAGTTAATG… hypothetical protein
1234_sll0839-sacB ATGCCAAGACCTTGCTGTTTAAAAT… hypothetical protein
1044_sll0864-sacB GTGGTCCAACTAAGTCTGAGTCAAG… M67 family peptidase
0982_sll1352-sacB ATGGAAGTAAGCCAGAGCAAGCCTG… DUF2079 domain-containing protein
0792_sll1121-sacB ATGGGTAGATTGAGGGGAACACTAA… ATP-dependent helicase
0666_sll1570-sacB GTGGTGAAATCAGAATCAGGTATTT… hypothetical protein
0730_sll1072-sacB GTGACTATGATGGAAAAAACGGAAA… Uma2 family endonuclease
0604_slr1376-sacB ATGCTACACCGGAAAATCTATCAAC… hypothetical protein
0414_sll1516-sacB ATGGGCAAAACCCCCCTGGGACTGA… hypothetical protein
0352_ssr1765-sacB ATGAAAAAAGTAACCATGACAGTCA… type II toxin-antitoxin system HicB family antitoxin
0036_sll1401-sacB ATGAGATATAAGGTGGATCTAGAAA… hypothetical protein
0226_slr1789-sacB ATGAACTTTTATATTGCTCAAGCTA… hypothetical protein
3532_ssl6077-sacB ATGCTCAAATTTATAGGTATTGCAT… hypothetical protein
3406_sll5083-sacB ATGATATTTCCCTTTGATATAAATA… hypothetical protein
3470_slr6015-sacB ATGAAAATTATTGTTAAATTACAAG… hypothetical protein
3280_sll8006-sacB ATGAAACTGAAGCCCTATCCCGAAT… type I restriction-modification system S subunit
3154_slr0598-sacB ATGACCGGTAAACAGTTACACCAGT… DUF3067 family protein
3218_sll7050-sacB ATGCTTATTACCCTCGAGCCTACTT… hypothetical protein
3092_sll0444-sacB ATGAAAATTACGGAGATAGTGGCCC… hypothetical protein
2650_slr0619-sacB ATGATGAAACGAATTGCTGTAGAAG… amidohydrolase
2714_slr0313-sacB ATGAGCAAAGATCGCAACCACGGTT… DsbA family protein
2524_ssl1046-sacB ATGACAAATCAGTATGTACCAAATT… CD225/dispanin family protein
2462_slr0207-sacB ATGAATAACCTTACTGATCAGCTTG… hypothetical protein
2210_sll0023-sacB ATGCAACCGATAAAAATTAGTCGTC… glutathionylspermidine synthase preATP-grasp family protein
2084_sll0176-codA ATGACGGCTATGTGTGGTTTTGGAT… DNA-binding transcriptional regulator, FrmR family
1894_sll0428-sacB ATGATTATTGAAGAGATTGTCAATA… type II toxin-antitoxin system VapC family toxin, BrnT family toxin
1958_slr0404-sacB ATGCTTAAGATGCTCAAGAATTTAC… DUF1517 domain-containing protein
1768_sll1087-sacB ATGGGCATGATTGACTGGGCCATTG… sodium-coupled permease
1832_sll0913-sacB GTGAGAATAGTTACTATGCTTGCCT… Uma2 family endonuclease
1580_slr1343-sacB ATGACCATTGGCATTTGGATATTGG… cryptochrome/photolyase family protein
1390_ssr3532-sacB ATGGTTACAACTTTTAGCAAACCAT… hypothetical protein
1391_slr2080-sacB ATGCCAATCAGTGAAGATCTCAAAC… HNH endonuclease
1265_sll1151-sacB ATGTCAAAGTCCAAGTCCTCCGGGC… DUF389 domain-containing protein
1203_sll1618-sacB ATGTTGCCGTTGATTTTACCCGCTC… hypothetical protein
1013_sll1265-sacB ATGAGCAATAATCCTTCCCCTCACA… hypothetical protein
1077_slr1861-sacB ATGACTATTTTAAATTTTTCCGCTG… anti-sigma regulatory factor
0887_slr1541-sacB ATGGCCACCACTGCCGATGAAGTTT… DUF3782 domain-containing protein
0951_ssl2245-sacB ATGTCTATCAATGCTTACAAACTAG… hypothetical protein
0825_sll1969-sacB GTGGTAGCAGAATTTCCGGACCGTC… triacylglycerol lipase
0635_slr1395-sacB ATGAAACGTCCCACCCTCTACTGTG… hypothetical protein
0699_sll1913-sacB ATGGCCATTGCAACAAAATCTATTG… FAD-dependent oxidoreductase
0509_sll1946-sacB ATGGTTAAGCAAATTTTGTCTAAAT… phospholipid carrier-dependent glycosyltransferase
0573_slr1019-sacB GTGTTCAATTCCCCAGTTAGACCTA… PhzF family phenazine biosynthesis isomerase
0383_slr0680-sacB ATGACAAAAACTGCTAAAACTAAAC… tellurium resistance terB-like protein
0321_slr0981-sacB ATGGCTACCGTTTTAGACCTTCAGC… Uma2 family endonuclease
0005_sll1214-sacB ATGGTTAATACCCTCGAAAAGCCCG… magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase
0131_slr0245-sacB ATGGTCGCTATTATTTACAGCGCAG… acetylpolyamine aminohydolase
0069_slr1122-sacB ATGGCCGATTCTGCGCTACAACCTC… Cyanobacterial Signature Protein
3501_ssr6046-sacB ATGGAAAGTAGGCGATTATCTATCC… hypothetical protein
3565_cpc-all-codA cpcBAC1C2D + promoter
3375_sll5052-sacB ATGGCTCACGATGAAGCAGAAGAAT… hypothetical protein
3439_slr5116-sacB GTGAATAACCGAATTGTCATTGACA… putative toxin-antitoxin system toxin component%2C PIN family
3249_slr7081-sacB ATGGTCAGCATTCACATTACCCGCC… hypothetical protein
3313_ssl8039-sacB ATGGAAGGTTTACAAGAAGAATCTA… no conserved domains
3187_ssl7019-sacB GTGCCAGCTTTGGTTTCAGTCCCGA… No conserved domains
2997_slr1567-sacB ATGAAACTTTTTCATTGGCTACTTT… hypothetical protein
3061_sll1550-sacB GTGAGGACTCCTATGTTAAGAAAAC… membrane protein
2871_sll0498-sacB ATGAAAAATCGCTTTGTTGCCCTAA… TM2 domain-containing protein
2935_sll1333-sacB ATGACTGTGATTTTTCGTGGTTGGC… hypothetical protein
2745_sll0787-sacB ATGTTAACTGACTTAATTATTGAAC… AIR synthase-like protein
2809_sll0737-sacB ATGGCCGCCGATTCATCCTCTCCTC… hypothetical protein
2619_slr0511-sacB ATGATAATCCGAGAATTTTACAGCA… transposase
2683_slr0114-sacB GTGATGTTCCGCCCCTTGTCCCGGG… hypothetical protein
2493_slr0912-sacB ATGCTATCACTTCAAGACAACTACT… hypothetical protein
2557_sll0827-sacB ATGCCCCGTCCCTTTGACCGATCCA… hypothetical protein
2305_sll0068-sacB ATGCCAGAGGGAATTTATTCTGCCT… NACHT domain-containing protein
2115_slr0362-codA GTGTTATTTAATCTCCCTATTTTCT… YqeG family HAD IIIA-type phosphatase
2179_slr0341-sacB ATGAGCAATTCCAGTGGATCCCGTC… amino acid ABC transporter substrate-binding protein
1927_sll0261-sacB ATGAAACCGCACATCATCGTTTGTG… potassium channel
1737_slr1152-sacB GTGCTTTCATTGATCAAAATTGCCG… pentapeptide repeat-containing protein
1801_sll1558-sacB ATGAAAGCCATGATTTTGGCCGCCG… uridine diphosphateglucose pyrophosphorylase (UDP-glucose pyrophosphorylase)
1675_sll1378-sacB ATGGCATTAACCATGCCACGATTTT… DUF1838 domain-containing protein
1549_sll0810-sacB GTGAGCCATAACCGAATTAAACGTT… IS701 family transposase
1487_slr2128-sacB ATGATTTCTAACCCTTCTGTCCCAA… DUF29 domain-containing protein
1171_sll1696-sacB ATGGTATTTAAGCTGAATTTACACG… hypothetical protein
1045_sll0863-sacB GTGAAAATTTCAACATCCATGCCCC… hypothetical protein
0731_sll1071-sacB ATGGCTGTCCATTTGCCGTCCTCTG… TPM domain-containing protein
0541_slr2052-sacB ATGATTGCCCCTATTTGCCGTGCTC… hypothetical protein
0289_slr0962-sacB ATGTTGGCGTTGATGCTATCCGGTG… hypothetical protein
0353_ssr1766-sacB GTGAGCAATCTTCCAAGCGTCCAAG… type II toxin-antitoxin system HicA family toxin
0037_sll1400-sacB ATGAAATTATTGTTTGACGAAAATC… hypothetical protein
0101_slr0732-sacB ATGAAACCAATCCACAGATACATCA… hypothetical protein
0227_sll1673-sacB ATGGAAAATACCGATGAAAAAAAAG… regulatory components of sensory transduction system
3533_ssr6078-sacB GTGGTTCCCGGCACTTTATGGTCGT… nothing
3407_sll5084-sacB GTGTCATTGAGTGGGGCTATTTTAT… thermonuclease family protein
3471_slr6016-sacB ATGACCAGACTCTTTAACCTAGAAT… hypothetical protein
3281_sll8007-sacB ATGCGAATCCTGCTTGATGAATGCG… hypothetical protein
3345_slr5022-sacB TTGATCTACCTCGATTACCATGCCA… cysteine desulfurase