Plasmids and Cultures

This database contains entries for 3,572 known and predicted gene coding sequences in Synechocystis sp PCC 6803 based on the Kazusa genome sequence and nomenclature (http://genome.microbedb.jp/cyanobase/GCA_000009725.1). Plasmids for generating marked mutants and mutant strains can be searched for by gene Name/Accession (e.g. 'sll1226' or '1513_sll1226-sacB'),  gene homology (e.g. 'hydrogenase large subunit'), Gene ID (e.g. hoxH), or by a portion of the gene coding sequence Sequence (CDS).

Please note, the library is still being completed. Plasmids and/or marked mutants may not be available. Users can also search for available materials by Plasmids made or Mutant made.

Plasmids, mutants and the unmarking spacer plasmid pUC19K-UL are currently available on request. Regardless of the segregation status of the mutant, open reception of a cyanobacterial mutant strain we recommend 1-2 cycles of restreaking on a selection plate containing kanamycin (100 μg/ml).

Name CDS Gene Homology Gene ID Sort descending
2786_slr0709-sacB ATGACCATGAAAATTATTCAAACTG… RidA family protein
2724_slr0787-sacB ATGCAAACTAAATATCAATACGGGA… bifunctional nicotinamide-nucleotide adenylyltransferase/Nudix hydroxylase
2534_slr0581-sacB ATGAAAAATTCCTATTCCGCTCTCT… hypothetical protein
2408_sll0395-sacB ATGACCCTCAATCTCTACTTTTTGC… histidine phosphatase family protein
2472_sll0178-sacB ATGTCGCAACAAAACTATAATTGGA… NACHT domain-containing NTPase
2282_sll0408-codA ATGGGGGCGTTGAAGTGGGAAAATT… peptidyl-prolyl cis-trans isomerase
2156_sll0765-sacB ATGGCTTATCAGGTAACAACTTTTT… rhodanese-related sulfurtransferase
2220_slr0007-codA ATGGCTCTTTCCCCCGCAGACGTTA… nucleotidyltransferase
2030_sll1845-sacB GTGTTTATGATTCCAGCTTGGCTAT… hypothetical protein
2094_sll0167-codA ATGTTTACCAAAATCCGTGACCTTG… hypothetical protein
1904_sll0422-sacB ATGACCCCCAAATTAATCATCCATG… asparaginase
1968_slr0144-sacB ATGGGTTACCTGCCAAGCCAAACTG… hypothetical protein
1778_slr1674-sacB GTGACCCATGAACCCCAACGTCCCC… DUF760 domain-containing protein
1842_ssr1600-sacB GTGGTGCTGGACTTGTCCACCATTG… anti-sigma factor antagonist
1526_ssr1375-sacB GTGTCAGCTACCCAGGTAGACGTTT… hypothetical protein
1274_slr1258-sacB ATGAGTACCATCAAGGCCCTGTTAC… SIMPL domain-containing protein
1338_ssl3127-sacB GTGGTGCTGGGGGGAGCTGACAGTA… branched-chain amino acid ABC transporter permease
1148_sll2002-sacB ATGGGCGTTACCTGGGAATTGGATT… DUF1092 family protein
1086_sll1775-sacB ATGTCCCTGTTAGTCCAGAAACCTG… hypothetical protein
0896_sll1466-sacB ATGAACGTTCTCTTTCTTCACCAAA… glycosyltransferase
0960_slr1241-sacB ATGCAAATTTCCCCAGCATTTAAAT… hypothetical protein
0834_slr2077-sacB ATGAATGGTATTCACCGTTGGCTTT… EAL domain-containing protein
0708_slr1135-sacB ATGATTGAAGATAATCAGTCCCACA… hypothetical protein
0582_slr1023-sacB ATGAAAAACCTTTGGCAATTGCCCG… cupin domain-containing protein
0392_sll0645-sacB ATGTCTAACCGCCCAGGAAAGTTAC… DUF928 domain-containing protein
0266_ssl2384-sacB ATGTTTGATCGTTCCAACAAAGATT… hypothetical protein
0330_slr1614-sacB ATGTTTTTACATGTTGTTTCTGCTT… DUF2442 domain-containing protein
3510_sll6055-sacB GTGGTGGTAAATGCACAGCAATTCA… hypothetical protein
3384_sll5061-sacB ATGATAACCCTGACCAGTCCTGGAG… PAS domain S-box protein
3448_ssl5125-sacB ATGGGAAAAGCAGTTGCCTTTGGCA… hypothetical protein
3322_sll8048-sacB ATGAATACTAGCATCACCACCACTC… M48 family peptidase
3132_slr0586-sacB GTGGCTAATATGGTGCAGAAGCTCG… HAD family hydrolase
3196_sll7028-sacB ATGAGCGATGATTGCCAAGCTCTGC… hypothetical protein
3006_slr1575-sacB ATGCCCTTTGTTGCCATTGCTTTCG… mechanosensitive ion channel
2754_sll0779-sacB ATGGCAATTTCCGCACAAAGTTTCA… PAS domain S-box protein
2628_slr0517-sacB ATGGAAAAATCACCGTTGAGTCCCC… GNAT family N-acetyltransferase
2440_sll0189-sacB ATGACGGATTTAGGACAGGCCGGGG… YraN family protein
2314_sll0064-sacB ATGTTGCTCAAAAGTGCTTTTACTT… amino acid ABC transporter substrate-binding protein
2188_slr0347-sacB ATGACCACTCTGTACAATCTGCTCG… ABC transporter permease
0096_slr0728-sacB GTGTGGGCCGCCCTGACCCTATGGT… O-antigen ligase family protein
1810_slr1693-sacB ATGAGCAATTCAGTTTTGTCCACTT… PatA subfamily
1684_sll1369-sacB ATGGTGAGAATCTTTGGGGCGACGG… sll1369
1494_sll1239-sacB GTGACCAATAATTTGACTTCAGACC… hypothetical protein
1558_slr0821-sacB GTGGTTTCACCGGCTTTGCCCCGGT… MoaD/ThiS family protein
1368_sll0249-sacB ATGACAAACCAGAATATGCCCCCGG… alpha/beta hydrolase
1432_sll1424-sacB ATGACCAGTGCCTATATTCTGGTTC… DUF3084 domain-containing protein
1181_slr1820-sacB ATGAAACTAACTTGGTTGAATTCCT… glycosyltransferase family 39 protein
0677_slr2010-sacB ATGACTGGACTCCTTGATATTGGTT… cation:proton antiporter
0741_ssl3446-sacB ATGGTAGTGTCCCAAAATTTTATTC… DUF2949 domain-containing protein
0551_slr1908-sacB ATGAATAAGTTGACCAGTCATTTAC… hypothetical protein
0615_slr1384-sacB GTGAAGATTCTTTTCATTAGCAACG… Cyanobacterial Signature Protein
0425_slr1599-sacB GTGAGTATTCCCCTGGCTACGGGAT… hypothetical protein
0489_sll1640-sacB ATGATTTATCTAACCCGTCTTCAGC… carbon-nitrogen hydrolase family protein
0299_sll0936-sacB ATGGCCAGAGATTTACGGGGATTCA… UbiD family decarboxylase
0363_sll1025-sacB ATGGAAAATTTCGATGCCATTGTGG… FAD-binding oxidoreductase
3479_ssr6024-sacB ATGACTATTCAAGAAGCCAAAGAGA… hypothetical protein
3543_slr6088-sacB ATGCTCCTAGCCGAAATTCTCGAAA… hypothetical protein
3353_sll5030-sacB ATGAAAACCTCTTTAGATTGTATTC… DUF89 family protein
3417_sll5094-sacB ATGAAGGGTTGGCTATTGGATACCA… type II toxin-antitoxin system VapC family toxin
3227_slr7059-sacB ATGAGCACATTGCAACAATTCAGCC… MerR family transcriptional regulator
3291_sll8017-sacB GTGACAGAATTGGCCCAGGAAGCCG… hypothetical protein
3101_slr0454-sacB GTGCGAATCAATTCATCTTCAAAGA… cation or drug efflux system protein
2661_slr0626-sacB ATGTCTATGCCTCGCCTCAGCCTTT… tetratricopeptide repeat protein
2725_slr0788-sacB ATGAATACTAATCTCATTCTGGATG… nicotinate phosphoribosyltransferase
2535_slr0582-sacB ATGGCAGGATTGCGTCAAAATTTGA… hypothetical protein
2599_slr0095-sacB ATGGGTAAGGGCATCACCGGTTTTG… O-methyltransferase
2409_sll0394-sacB ATGCGTAACCAGTATTTTTCCCTCA… hypothetical protein
2473_sll0888-sacB ATGTTAGCGCTCCAACCCCGCTTTA… Uma2 family endonucleas
2347_slr0482-sacB ATGGCCAGTTCCCCCAGACCCACTG… methyltransferase domain-containing protein
0127_slr0243-sacB ATGCGAAAATCACTTTCGGGCAAGC… hypothetical protein
1969_slr0145-sacB ATGATTCATCAAGCCCAGTGGGGGC… hypothetical protein
1843_slr0954-sacB ATGACCCAGTTTGATGACCATCCCC… Mini-ribonuclease 3
1653_sll1866-sacB GTGCCCCTAGTTAGTCAATCGGATT… Sua5/YciO/YrdC/YwlC family protein
1717_sll1166-sacB ATGACTCAGTTAATTAAATCTTTAC… AI-2E family transporter
1401_sll1985-sacB ATGAAATTATCCGTTCTTACTGTGG… transposase
1275_slr1259-sacB ATGCTGTTTCGTCAATTGTTTGATC… MBL fold metallo-hydrolase
1149_slr2144-sacB GTGCCATCTCCGCTAACCTCTCCAT… Cyanobacterial Signature Protein
1213_sll0858-sacB GTGGTTACTAAGCGATCCCCCACGG… periplasmic heavy metal sensor
1023_slr0880-sacB ATGCAAGCTGTTGATTACACTACCC… secreted protein MPB70 precursor
1087_sll1774-sacB ATGTTTGACAATCTGTGCAAATTTC… Rpn family recombination-promoting nuclease/putative transposase
0961_ssr2067-sacB GTGATTATGACTGTTAGTAATATTT… type II toxin-antitoxin system HicB family antitoxin
0835_slr2078-sacB ATGTGGCATCTTCCTCCCAGTAATT… NUDIX hydrolase
0645_sll1582-sacB ATGAACGATAAGCAAAAAGCTTCAG… DEAD/DEAH box helicase
0709_sll1084-sacB GTGAAAACCATGCCAGTGCCCGTAG… TIGR03960 family B12-binding radical SAM protein
0519_ssr3452-sacB ATGGTTGCCCCCGTCAAGCAAAAGA… transposase
0583_slr1024-sacB ATGTCCCTAGAGCGTCAAACTTTAA… hypothetical protein
0393_sll0644-sacB ATGGTTTATGCCCCTCGCCCATTGC… alpha/beta hydrolase
0457_slr1050-sacB ATGCTTAACCAGTTCCCGAAGCTTC… phospholipid carrier-dependent glycosyltransferase
3511_slr6056-sacB ATGAAAAAAGTAGGATTTGATATCA… helix-turn-helix domain-containing protein
3385_sll5062-sacB ATGGGGAGTTTTGGGCTATTGTTCA… hypothetical protein
3449_slr5126-sacB ATGAAAAAATTACTATTATTGTTAA… hypothetical protein
3259_slr7091-sacB GTGTTTAAAAAACTTCATACTATTT… hypothetical protein
3323_sll5132-sacB DUF262 domain-containing protein
3133_slr0587-sacB ATGATTACCGTCGCACGAAAAACTA… hypothetical protein
3197_sll7029-sacB ATGACCCCAGTTCAGCTAAAAAACT… MoxR family ATPase
3007_slr1576-sacB ATGGGCAATCGATCTCGTTTTGGGG… hypothetical protein
2755_sll0778-sacB ATGGTCATGAATCAAAATAATAGAC… ABC transporter
2819_sll0040-sacB ATGCTGGGTGATATCCAAGTCCCCC… chemotaxis protein CheW
2503_ssl1690-sacB ATGGCCGCTAAAATGAAAAAGGGCA… NAD(P)H-quinone oxidoreductase subunit O
2567_slr0846-sacB ATGGGCAAGGATGGCTTCTATACTA… RrF2 family transcriptional regulator
2441_sll0188-sacB ATGGAGACTGGGACCGTCAAAGTTT… hypothetical protein
2315_sll0063-sacB ATGACAGAACCAGCCAACAATCATC… AI-2E family transporter
2125_sll0335-sacB ATGCAACTTCAGAGCTACGACCCAG… MEKHLA domain-containing protein
1999_slr1924-sacB ATGAAAAAATCCTTATTTATGGTCG… D-alanyl-D-alanine carboxypeptidase
1873_sll1531-sacB ATGTTAGTTCCCCTTCTTGGTTTGG… hypothetical protein
0097_slr0729-sacB ATGACCTCAACTACCCCAGAGATTG… Cyanobacterial Signature Protein
0223_sll1675-sacB ATGACCCTTTCTTCTGGTTTACCTA… VOC family protein
1937_ssl0483-sacB ATGGGGTTTGCGGATCTGTCGATTC… hypothetical protein
1747_sll1095-sacB ATGGCTGAACAGCATTTAATTATTT… DUF2064 domain-containing protein
1811_slr1694-sacB ATGAGTTTGTACCGTTTGATTTACA… activator of photopigment and puc expression
1621_slr1970-sacB ATGAGCATCCAAGAAATCTTTACCA… hypothetical protein
1495_slr1322-sacB ATGCCTCCTACTCTGCTCCTCTCCC… metalloprotease
1560_slr0822-sacB ATGTCTGACCCTGATGTGTCCGTCT… cation-transporting ATPase; E1-E2 ATPase
1434_ssl2781-sacB ATGCAAAAAGCCGACGAATTTGCCA… hypothetical protein
1244_slr1243-sacB ATGGATTTTACTAAAATAAAGAGAA… ATP-binding protein
1308_slr1998-sacB ATGGAAGAGTTTGCAGTGGTGATAA… NAD(P)/FAD-dependent oxidoreductase
1182_sll1687-sacB GTGAGGGTATCTGACAAAAATTCCA… diguanylate cyclase
1056_slr1403-codA ATGGCTGCCTCTACCCAGACTCCGG… hypothetical protein
0678_ssr3409-sacB ATGGTACGAAATTCATTATCTTGGC… hypothetical protein
0616_slr1385-sacB ATGAGTATCTACGATCCCAACCCAG… GAF domain-containing protein
0426_slr1600-sacB ATGGACGATACTAACACCACATTAC… hypothetical protein
0364_ssl1972-sacB ATGATCAGCATTGATTTGACCCTTA… Cyanobacterial Signature Protein
3544_ssr6089-sacB ATGGGACTTTTAAGTTATGGTCTTG… hypothetical protein
3354_ssl5031-sacB GTGCACGTTTCTTTGAATGTGGTTC… DUF4079 super family conserved domain
3418_ssl5095-sacB ATGACTAATTCAGCAACCCAAGGTC… type II toxin-antitoxin system prevent-host-death family antitoxin
3228_slr7060-sacB ATGAATACGCCCCAAGTTAGTTTTA… VWA domain-containing protein
3292_sll8018-sacB GTGGTCATGGGGATAATCAAGAATC… hypothetical protein
3102_slr0455-sacB ATGAAGACAACGTTGTTTTCGGTAA… hypothetical protein
3166_slr0609-sacB ATGTCCACCGTTGACCATGCCCCCC… GTP-binding protein
3040_sll0732-sacB ATGGCCAAACCAGTTAATTTGCCTG… hypothetical protein
2662_slr0099-sacB GTGAGAATGAGAAGCTTTGAATACT… transposase
2726_slr0789-sacB ATGGTTGACTACAGGAAAGCCCGAT… HPP family protein
2536_sll0540-sacB ATGGGGCAAAAAAATGAAGCGGTTA… PstS family phosphate ABC transporter substrate-binding protein
2600_slr0096-sacB ATGGCTACTACCCTGCTTTCCCCCA… low affinity sulfate transporter
2474_ssr1513-sacB ATGGCGATCGCCAAATTTGAATTTC… hypothetical protein
2158_sll0763-sacB GTGGTCTTGGGCAGTCAGAACGACC… DUF4340 domain
2032_ssr3304-codA ATGCAGTGGCAAGAATCTTTACCCT… hypothetical protein
0002_slr0612-sacB GTGGGGCGTTTGGATCAAGATAGCG… pseudouridine synthase
0128_sll0230-sacB GTGTGTCAAAATCTAGGGAAATTTG… MTH1187 family thiamine-binding protein
2096_sll0163-codA ATGACTGTTATGTTATCTTGCCTCA… beta transducin-like protein
0192_slr1107-sacB ATGGCAGGTAACGAGAATATTGCCG… hypothetical protein
1906_slr0445-sacB ATGGAAGATATTGCATTTATGCCAC… Uma2 family endonuclease
1970_slr0146-sacB ATGCAAAAAGATTTTGAACGGCTTT… potential phycobilisome proteins
1780_slr1676-sacB ATGATGTTTCCTCTACTGGCCCTTG… DUF4079 domain-containing protein
1654_sll1390-sacB GTGGAGTTTCACCGGCAATTGCCCA… YgcG family protein
1718_sll1447-sacB ATGAGAATGCTATCGGTGTTTGGGG… DUF4359 domain-containing protein
1592_sll1247-sacB GTGTCTTTGACCTTATCTCATGATT… hypothetical protein
1402_sll1984-sacB ATGTTAAGAGAACTAATTAAGCTCT… transposase
1466_sll1999-sacB ATGGATAGAGGATTTTGTGACTTAC… transposase
1276_slr1260-sacB ATGGTCAGTTGGTGTCAGTCCCTTT… Cyanobacterial Signature Protein
1214_sll0857-sacB ATGCTCGGCGGGCCATGCGGGAATT… hypothetical protein
1088_slr1869-sacB ATGATAACTATGAATTTTAAACTGG… hypothetical protein
0898_sll1464-sacB GTGACTAATCCCTTTCTGAATTTGA… YdiU family protein
0836_ssl3712-sacB GTGGGGGAAACCAAATTGACAGCAG… hypothetical protein
0520_slr2036-sacB ATGATATCAAATTTTGGACATATTG… transposase
0584_slr1025-sacB ATGAAAAATAAGTTGGGAATAATAT… hypothetical protein
0394_slr0686-sacB ATGACTAACCAACCCAACCAAGTGG… DUF4870 domain-containing protein
0268_slr1298-sacB ATGCTGGCTAAGCTCCGCCAACGCC… FUSC family protein
0332_slr1616-sacB ATGAATCAACGAATCAAAGTAATGA… ATP-grasp domain-containing protein
3512_slr6057-sacB ATGGCAAGACGAAAGCAACCAAAAT… ImmA/IrrE family metallo-endopeptidase
3386_sll5063-sacB GTGATAGCCTTGCTTCAGCGAGGGG… hypothetical protein
3450_slr5127-sacB ATGAGAAAAATCTCAATTAACAGAT… hypothetical protein
3324_ssl5001-sacB ATGAATACCGTAACCGCCGTAAGAG… no conserved domains
3198_sll7030-sacB ATGGTGTTAAAAATTGAACTTCTTG… GNAT family N-acetyltransferase
3072_slr1661-sacB ATGCCCAGGGCCATGTTAAGTTGCC… ShlB/FhaC/HecB family hemolysin secretion/activation protein
2756_sll0777-sacB GTGGATTGCCAGTCAATTAGTAAAC… D-alanyl-D-alanine carboxypeptidase family protein
2820_sll0039-sacB ATGGGCAGCGCACTTGTTATTGACG… response regulator CheY subfamily
2504_slr0921-sacB ATGCCCACCGGGGCAAAATTTTCCG… Cyanobacterial Signature Protein
2378_slr0630-sacB ATGGCGATCGCCAAATTACCCCGTC… MBL fold metallo-hydrolase
2252_sll0205-codA ATGCTACTGGACACCCACACGCTTT… type II toxin-antitoxin system VapC family toxin
2316_sll0062-sacB ATGCCCTCCTTGGGCTGTTGCTATA… hypothetical protein
2126_slr0373-sacB ATGGGTAACCTAATCATTAGTGATA… hypothetical protein
2190_sll0319-sacB ATGAACTGGAAATTTTTCCCACACC… DUF3747 domain-containing protein
2064_sll0298-codA ATGGCGTCGATTAGTGGGGCAATGG… DUF2062 domain-containing protein
0034_slr1493-sacB GTGGACCGATCGCCGCTAATGCCAT… DUF1636 domain-containing protein
1874_sll1530-sacB ATGTTTAACAGAATCAAAGATAAAC… FkbM family methyltransferase
0098_slr0730-sacB ATGGCCAGCACCCCCATCCAGAGCG… DUF3119 family protein
0224_slr1787-sacB ATGGGCGGTTCTGCCAAATTTTTGT… thiamine-phosphate kinase
1938_slr0292-sacB GTGGGTCAATTTTTACCCAGACCCC… sirohydrochlorin chelatase
1622_slr1971-sacB ATGGGTTTTCGTCGCTATCAAAGTT… hypothetical protein
1497_slr1324-sacB GTGGAAGTAGAATACAGTGGAGTGT… hybrid sensory kinase
1435_slr1506-sacB ATGGAGAAAAAAATAACTTTACGTT… alpha/beta hydrolase
1245_sll1164-sacB ATGAAACATGTTTTTTCTGGCTTTC… EamA family transporter
1309_slr1999-sacB ATGAAGGTTAAAGTAATCCTCAAAA… type II toxin-antitoxin system HicA family toxin
1119_sll1757-sacB ATGGGGGGAAAGTGCTTAGCTAAGA… hypothetical protein
0993_slr1357-sacB ATGGCTTACAGTTTAGATTTGAGGC… transposase
1057_sll1308-sacB ATGCCCATGGCCATCGATATTAGCA… SDR family oxidoreductase
0679_ssr3410-sacB ATGATCACCACCATCATTAACTGGC… hypothetical protein
0617_ssr2318-sacB ATGAAGAGTTACCGGCGCTTGAAAC… hypothetical protein
0301_slr0971-sacB ATGAAGCTGGTGAAGGATGTACAAC… DUF4335 domain-containing protein
0365_sll1024-sacB GTGCTAGTGTGTATGGCCTTTTCCC… hypothetical protein
3481_ssr6026-sacB ATGCACCACGACACCAAAGAAGCGA… hypothetical protein
3545_slr6090-sacB ATGAAGCATTATAAAACTTCACACG… hypothetical protein
3355_sll5032-sacB ATGAACTCAGAAAATCTCGCGGCTC… DUF4079 domain-containing protein
3419_ssl5096-sacB ATGATGACTAATTTTATTGATCTTG… hypothetical protein
3229_slr7061-sacB ATGAAAATCATCTCTTTTCTCGGTT… TIGR02221 family CRISPR-associated protein
3293_sll8019-sacB GTGCTAACGACCAAGCATCTGCCCC… hypothetical protein
3103_slr0456-sacB ATGGAAGATTGGGAGAAAAACCTCT… hypothetical protein
3167_slr0610-sacB GTGGGCAGTGTGGTGAATCTAGGGG… ABC transporter permease
2977_ssr1114-sacB ATGATGAGAGCTTTTGAGGTAATGG… hypothetical protein