Plasmids and Cultures

This database contains entries for 3,572 known and predicted gene coding sequences in Synechocystis sp PCC 6803 based on the Kazusa genome sequence and nomenclature (http://genome.microbedb.jp/cyanobase/GCA_000009725.1). Plasmids for generating marked mutants and mutant strains can be searched for by gene Name/Accession (e.g. 'sll1226' or '1513_sll1226-sacB'),  gene homology (e.g. 'hydrogenase large subunit'), Gene ID (e.g. hoxH), or by a portion of the gene coding sequence Sequence (CDS).

Please note, the library is still being completed. Plasmids and/or marked mutants may not be available. Users can also search for available materials by Plasmids made or Mutant made.

Plasmids, mutants and the unmarking spacer plasmid pUC19K-UL are currently available on request. Regardless of the segregation status of the mutant, open reception of a cyanobacterial mutant strain we recommend 1-2 cycles of restreaking on a selection plate containing kanamycin (100 μg/ml).

Name CDS Gene Homology Sort descending Gene ID
3037_sll0733-sacB ATGGAATTTACCTTTTTACTACCCC… DUF4278 domain-containing protein
1962_sll0354-sacB ATGGCTACTGAACTACTTTTTAATC… DUF4281, DUF2442 domain-containing protein
0174_slr1094-sacB ATGAAATTTATTGGCATTGATTTGG… DUF429 domain-containing protein
3045_ssr1256-sacB ATGGTCATTTCCTCACCCCTCCACC… DUF4327 family protein
2888_ssr1562-codA GTGGCTTTTATGAGTACTGCAACTT… DUF4327 family protein
3327_sll5004-sacB GTGAATATGTTAGGTCGCCACTCTG… DUF433 conserved domains
2144_slr0770-codA ATGGCGACAACCCTAATCAATCATA… DUF433 domain-containing protein
3282_ssl8008-sacB ATGGTGACCACAGCCAGAGTAATGC… DUF433 domain-containing protein
3348_ssl5025-sacB ATGCTACAGAACTTAGATCGAATCA… DUF433 domain-containing protein
0487_ssr2962-sacB ATGAATAGCTTACTGTCTCGCATTA… DUF433 domain-containing protein
0038_ssl2733-sacB ATGAACTACAGAAACTACATTACGA… DUF433 domain-containing protein
3202_sll7034-sacB ATGACGAGTGCATTACAGGCGATCG… DUF433 domain-containing protein
0813_slr1209-sacB ATGAATAGGAGACTGGTAGAGTCTT… DUF433 domain-containing protein
1763_slr1168-sacB ATGTTAACCGTTACTAATTATCCCC… DUF433 domain-containing protein
2769_sll0676-sacB ATGGCTAAAAATGATTTGCAATCTC… DUF4334 domain-containing protein
0301_slr0971-sacB ATGAAGCTGGTGAAGGATGTACAAC… DUF4335 domain-containing protein
0039_sll1399-sacB GTGACGATGCGGCAGTCCCTTTCCC… DUF4336 domain-containing protein
2158_sll0763-sacB GTGGTCTTGGGCAGTCAGAACGACC… DUF4340 domain
2957_slr0651-sacB ATGCTTGCCCTAATTGACACTGTTA… DUF4346 domain-containing protein
0166_slr1415-sacB GTGGGTCTTGATCCGCCGTTGCCAA… DUF4350 domain-containing protein
1177_sll1691-sacB ATGGAAGAATCCGTCGGAGTCAGTT… DUF4351 domain-containing protein
1534_slr0810-sacB ATGCAATTAATCTCTGGCTTTGTGG… DUF4351 domain-containing protein
0468_ssl1923-sacB GTGTTGCGTCTGTTAAACCGTCGCT… DUF4351 domain-containing protein
1718_sll1447-sacB ATGAGAATGCTATCGGTGTTTGGGG… DUF4359 domain-containing protein
3215_sll7047-sacB ATGACAAACCGAATGATAGAGACTT… DUF4386 domain-containing protein
1004_sll1272-sacB ATGTCAGAGATTGAGGAATCAGCAA… DUF4393 domain-containing protein
3276_sll8002-sacB ATGACCGTTCCCGCTCAGCCTAAGA… DUF4433 domain-containing protein
2279_sll0412-sacB ATGCCCTTGCCTTTGATGATGATTA… DUF445 family protein
0394_slr0686-sacB ATGACTAACCAACCCAACCAAGTGG… DUF4870 domain-containing protein
2449_sll0185-sacB ATGGCTAAAGAAGACCGACCCTCCC… DUF4912 domain-containing protein
0795_slr1194-sacB ATGGCCAATCGTACCCAAAGTCGTT… DUF533 domain-containing protein
0510_slr2032-sacB ATGAGTGCAAACCTTGCCCAACTCC… DUF561 domain-containing protein ycf23
2004_slr1927-codA GTGCGGAAGCAGAGGAGCAAAGAAA… DUF58 domain-containing protein
0682_slr2013-sacB ATGGTTCCCACTCTCCGCTTTTATA… DUF58 domain-containing protein
0164_slr1413-sacB GTGGCTGATTCTGATCATTATCCAA… DUF697 domain-containing protein
0281_slr1306-sacB ATGGGGCAACCAGGTCTAACAATGG… DUF697 domain-containing protein
1562_sll0804-sacB ATGAATTCCCCTGCCCCTGATCCGG… DUF697 domain-containing protein
2952_slr1462-sacB ATGCCCCTGCCCCGTTTACTAACCA… DUF697 domain-containing protein
2863_sll0503-sacB ATGAATAATAATTCCTTGACTGATT… DUF697 domain-containing protein
2118_slr0363-sacB ATGGCCGGGGAATTTCCACCGCCAA… DUF721 domain-containing protein, Ig-like domain-containing protein
1355_sll1586-sacB ATGGTCACCGATCGCCAAAAGTCTG… DUF748 domain-containing protein
1871_slr1638-sacB ATGGAATTTAACTTTGACTTTCATA… DUF760 domain-containing protein
1778_slr1674-sacB GTGACCCATGAACCCCAACGTCCCC… DUF760 domain-containing protein
3304_slr8030-sacB ATGGTCTGGTCACGTCGAAATTTTC… DUF839 domain-containing protein
3521_slr6066-sacB ATGTTTGCCTCCAATCCAAAACCTA… DUF853 family protein
3462_slr6007-sacB ATGTTTGCCTCCAATCCAAAACCTA… DUF853 family protein
1459_sll1411-sacB ATGTCTAAATCTCCCAATCGGGAAT… DUF86 domain-containing protein
3200_slr7032-sacB ATGAATCGTGATCTGGCCTCAATTT… DUF86 domain-containing protein
0437_sll1505-sacB ATGCAACGTAATCAAGAATCCCTTA… DUF86 domain-containing protein
3341_slr5018-sacB ATGAATCGTGACAACGCTTATCTGC… DUF86 domain-containing protein
3353_sll5030-sacB ATGAAAACCTCTTTAGATTGTATTC… DUF89 family protein
1112_sll1761-sacB GTGAACAGGCTGAGCAAAATGTATG… DUF922 domain-containing protein
1617_sll1891-sacB ATGGTTAATCATCCCTTGCCGCTTT… DUF928 domain-containing protein
0392_sll0645-sacB ATGTCTAACCGCCCAGGAAAGTTAC… DUF928 domain-containing protein
2326_slr0065-sacB ATGACCGATCGCCGTCAGTATGCTC… DUF938 domain-containing protein
0773_sll1797-sacB GTGGATGTGATTGACATGGCTCCAG… DUF98 domain-containing protein ycf21
2112_slr0359-sacB ATGGACAAGGGAGGAAAGACCTATA… EAL domain-containing protein
2559_slr0842-sacB ATGAATCCCTCCAATGCCCAACTTA… EAL domain-containing protein
1809_slr1692-sacB ATGAATTCCTCGCTTTACCATGGTG… EAL domain-containing protein
0834_slr2077-sacB ATGAATGGTATTCACCGTTGGCTTT… EAL domain-containing protein
3455_slr6110-sacB EAL domain-containing protein
0183_slr1102-sacB ATGCCATCCATGAGTAACGATTCCA… EAL domain-containing protein
0184_slr1103-sacB ATGACTAACCTGCCTGAATTTCGAC… EAL domain-containing protein
0185_slr1104-sacB ATGAAGCAACACATACTAGTTCTAG… EAL domain-containing protein
1921_sll0267-codA ATGTCCATCATGCCCCCTCCTCCGT… EAL domain-containing protein
1609_sll1895-sacB ATGCTTTATCAATTGGTCGTTGATT… EAL domain-containing protein
0411_slr1593-sacB ATGTTTATATTTCCACGCTTTCCCC… EAL domain-containing protein
1245_sll1164-sacB ATGAAACATGTTTTTTCTGGCTTTC… EamA family transporter
1987_sll0141-sacB ATGAACAAGTACATCCCCCACCAAC… efflux RND transporter periplasmic adaptor subunit
0071_sll1053-sacB ATGACTGAGCCACCCGTACTGCACG… efflux RND transporter periplasmic adaptor subunit
2459_sll0180-sacB ATGGTTAGAAAACGCTCCCAATTCC… efflux RND transporter periplasmic adaptor subunit
3497_slr6042-sacB ATGCAAAACCGGATCATTGTTCAGG… efflux RND transporter periplasmic adaptor subunit
1986_sll0142-sacB ATGTCCTCCCCCAACTCCGTTTTTA… efflux RND transporter permease subunit
3161_slr0604-sacB ATGACCGACGTCCCCGTTAGCCGCA… elongation factor 4 lepA
1744_sll1098-sacB ATGGCTCGCACAGTGCCCCTAGAAC… elongation factor EF-G fusA
2552_sll0830-sacB ATGAACAACCCCACCAATGAATCCC… elongation factor EF-G fus
2953_slr1463-codA ATGGAAAAAGATCTCACTCGTTACC… elongation factor EF-G fus fus/ssrA
0186_slr1105-sacB ATGTCTCTTCCCATCCGCAATGTCG… elongation factor EF-G, translational GTPase TypA fus/ typA
2283_slr0434-codA ATGATATCCAGTAACGATTTTCGCA… elongation factor P; efp efp
1568_sll1261-sacB ATGGCAGAAATTACCGCTCAACTCG… elongation factor TS tsf
2479_slr0897-sacB ATGAATAGCATCCTTTCCCCCATTA… endo-14-beta-glucanase
1184_slr1822-sacB ATGAGTAGTTTGTTACGGAAAATGG… endonuclease III nth
1585_ssl2471-sacB ATGGGTTGGTTGATTAATCCGAAAG… Endonuclease, Uma2 family
1586_sll1250-sacB GTGGAGTGTCGAGGCGAATCTAAAA… Endonuclease, Uma2 family
2719_slr0318-sacB ATGAAAAACAAGATGAAACAGGACA… endoribonuclease L-PSP
1195_sll1623-sacB ATGTCCACCCCCGCCATCATTGCCC… energy-coupling factor ABC transporter ATP-binding protein
3039_slr0752-sacB ATGTTAAGTAAAGTCCCCGCCACCA… enolase; phosphopyruvate hydratase eno
0458_slr1051-sacB ATGGCTCCCCAGACTAATTTTTCAG… enoyl-acyl-carrier-protein reductase envM/fabl
0278_slr1303-sacB GTGGTTGAAAATCTTGAAACTATTG… ergothioneine biosynthesis protein EgtB egtB
2450_slr0199-sacB ATGGGCAGCCACTGTCCTTTGGTTT… ergothioneine biosynthesis protein EgtC egtC
0079_slr1128-sacB ATGGAAGCCTTTTTTCTCTTCTTTC… erthyrocyte band 7 integral membrane protein protein 7.2B stomatin
0200_slr1109-sacB ATGGTCAATCCCATTGTGGTGGCGG… erythroid ankyrin ank
1364_slr0264-sacB ATGCGATCGCCTTTGTTGGCCCCGT… esterase
0585_sll0992-sacB ATGGAACGATTAGAACACCACGCCA… esterase
0816_slr1212-sacB ATGGCAATCACCGCATTTACCCTGG… ethylene response sensor protein etr1/hik44/uirS
1813_slr1697-sacB ATGAGTTTTTGCGTTAATCCCAATT… eukariotic protein kinase pknA
1347_slr1727-sacB GTGGATACAGCGGTCAACGAATCCC… eukaryotic Na+/H+ exchanger
1606_sll1897-sacB ATGGCCTACTGGTTATTTCAAGGCA… EVE domain-containing protein
0874_slr1844-sacB ATGCCCGAACAAAATAGCATCCGTA… excinuclease ABC subunit A uvrA
2341_sll0459-sacB ATGACTTCTGACCTCTTTTCCCTCC… excinuclease ABC subunit B uvrB
1042_sll0865-sacB ATGGTTGCTACTGTTTCCTCTACGT… excinuclease ABC subunit C uvrC
2018_sll1854-codA ATGGCCAATCTATTTTTTCTCGGTT… exodeoxyribonuclease III; xthA xthA
3168_sll7106-sacB exodeoxyribonuclease V alpha chain
3271_sll7103-sacB ATGCAACTAAAAAATGATTATCATC… exodeoxyribonuclease V alpha chain
2213_sll0021-codA ATGTTAAAAGTCCTGCATCTTTCTG… exonuclease SbcCD subunit D
0454_slr1048-sacB ATGGTGCCCCAACAATTAATTTTAA… exonuclease subunit SbcC sbcC
3071_sll1546-sacB ATGGCTCCTTCCTCTGCCCAGATTG… exopolyphosphatase ppx
0315_sll0923-sacB ATGACCTACAGTTACCCAGAATTGC… exopolysaccharide export protein epsB, wzc
1100_slr1875-sacB ATGGCCCGTTTGTCCCAGGAATTGC… exopolysaccharide synthesis protein; ExoD exoD
0377_sll0656-sacB GTGTCTAACTTAATTATTACCGGTA… extracellular nuclease nucH
1386_sll0237-sacB ATGCTTTTATCAACGAGGAAACAAT… extracellular solute-binding protein
1282_sll1959-sacB ATGTTACCAGAGGTTGAACAAAGAC… extragenic suppressor; histidinol-phosphatase suhB/hisN
1669_sll1383-codA ATGACTTCTGCCCAAAAACCCGTTT… extragenic suppressor; suhB suhB
1528_slr0806-sacB ATGGATTGGTCAGCCATTGCGGCTT… FAD-binding oxidoreductase glcD2
0106_slr0734-sacB ATGCCAAACATTGCCGTTATTGGGG… FAD-binding oxidoreductase
0363_sll1025-sacB ATGGAAAATTTCGATGCCATTGTGG… FAD-binding oxidoreductase
0699_sll1913-sacB ATGGCCATTGCAACAAAATCTATTG… FAD-dependent oxidoreductase
2187_sll0321-codA ATGGTTCAAGTTGGTGCGGCGGCAA… FAD-dependent oxidoreductase
3416_slr5093-sacB ATGATCAGGCGACGAAGTTTTTTTA… FAD-dependent oxidoreductase
2634_sll0471-sacB ATGATTACCTACTGCCGCCGAACTG… FAD-dependent oxidoreductase
1356_sll0254-sacB ATGACTGAATTACCCCCCAATCCTA… FAD-dependent oxidoreductase
0496_sll1635-sacB ATGGATGTTCGTTTCATTTCCCTCA… FAD-dependent thymidylate synthase
0854_sll1735-sacB ATGCCTAACATTGTTGAAATTGCGG… fasciclin domain-containing protein
1591_slr1350-sacB ATGACTGCCACGATTCCCCCGTTGA… fatty acid desaturase desA
1322_sll1611-sacB GTGCTCACTGCTCAATCTGAATACG… fatty acid desaturase
2395_slr0643-sacB ATGTGGCTTCTTTTGCTCATCCTTG… fbt
2623_slr0513-sacB ATGACAACTAAGATTTCCCGGCGGA… Fe(3+) ABC transporter substrate-binding protein
2575_slr0075-sacB ATGAGCCAGACTATTCTTTCCATTA… Fe-S cluster assembly ATPase sufC
2574_slr0074-sacB ATGAGTTCCACCACTGTTAAAAACC… Fe-S cluster assembly protein sufB
2576_slr0076-sacB ATGACCGCCGCGATTTTAGCCGATG… Fe-S cluster assembly protein sufD
1116_ssr3184-sacB ATGCCCCATACCATTGTTACGGAAA… ferredoxin
0643_sll1584-codA ATGGAAAACCCTGTCCCCATAACTC… ferredoxin
1972_slr0148-codA ATGACCATGCCACCATTATGGAATT… ferredoxin
0619_ssl2559-sacB ATGAATAATTGCGTAATTTCTTTTC… ferredoxin
1974_slr0150-codA ATGGGTGCAATTTATTCCGTCAATT… ferredoxin petF
2229_ssl0020-codA ATGGCATCCTATACCGTTAAATTGA… ferredoxin petF
1287_slr2059-sacB ATGAAGAAGCGTGTGACCCTGACTT… ferredoxin
0850_slr1828-codA ATGGTTAACACCTACACCGCCGAAA… ferredoxin petF
1670_sll1382-sacB ATGTCCCGTTCCCACCGAGTTCTGA… ferredoxin petF
2790_sll0662-sacB ATGGTGATAGCTGATCTAAATTTTC… ferredoxin (bacterial type ferredoxin family) fed7
0808_slr1205-sacB ATGTTGGATCAGGGCCCGTTGGCAA… ferredoxin component, Rieske (2Fe-2S) protein
2480_slr0898-codA GTGGCTAATAAATTTGAGACCGTTA… ferredoxin--nitrite reductase nirA
2983_sll1499-sacB ATGTCCTTCCAATATCCGTTGCTAG… ferredoxin-dependent glutamate synthase gltB
1881_slr1643-sacB ATGTACAGTCCCGGTTACGTAGCGA… ferredoxin-NADP oxidoreductase petH
0291_slr0963-sacB ATGGTAACCACCCCCACCGCTGCCC… ferredoxin-sulfite reductase sir
2511_sll0554-sacB ATGACCAGCAGTGACACCCAGAACA… ferredoxin-thioredoxin reductase catalytic chain ftrC
2464_ssr0330-sacB ATGAATGTCGGCGATCGTGTTCGAG… ferredoxin-thioredoxin reductase variable chain ftrV
3036_slr0750-sacB ATGACTGTTGCTCAACAAGCCCCTT… ferredoxin:protochlorophyllide reductase (ATP-dependent) subunit chlN
0016_sll1206-sacB GTGGGAGGACGTGACATGAAAACAA… ferric aerobactin receptor iutA
0531_sll1937-sacB ATGAGTCTTCCCACTCCTTCCCTTG… ferric uptake regulation protein fur
3149_sll0567-sacB ATGTCCTACACCGCCGATTCCCTCA… ferric uptake regulation protein fur
0024_sll1406-sacB GTGAATACCAAAATAAGCTTAGGCT… ferrichrome-iron receptor fhuA2
0031_slr1490-sacB GTGCAAGGAGTGATTATGAATCAAG… ferrichrome-iron receptor fhuA
0021_sll1409-sacB GTGTGGGGAGCACAAAAAATGATCA… ferrichrome-iron receptor fhuA
0493_sll1636-sacB GTGCCTGGCGGGATTAACCCCCATT… ferripyochelin binding protein fbp
1923_sll0265-sacB ATGGCACAAACTGTTAGTGGCTTTA… ferritin-like domain-containing protein
2555_slr0839-sacB ATGGGTCGTGTTGGGGTCTTACTGC… ferrochelatase hemH
0630_slr1392-sacB ATGGTGAGTCATTGCCAAAGGGGGT… ferrous iron transport protein B feoB
1798_slr1686-sacB ATGGCCGCCATCACCCTCACCCTCC… FHA domain-containing protein
2041_slr1951-codA ATGTCTGATCCCTCGGCAAAACCCC… FHA domain-containing protein
0668_sll1568-sacB GTGCCCAATAGTATGGATGCCAATA… fibrillin
3553_sll6098-sacB ATGGCGATCGCCAGCCGAGCAGGTC… Fic family protein
2234_slr0019-sacB ATGGTGTTTCGATTCCCCTCGCCAG… fimbrial biogenesis outer membrane usher protein
1294_sll1950-sacB ATGTCTTCCCCCAGCCTTTCCCCCC… FkbM family methyltransferase
2491_slr0907-sacB ATGGTCGAATTAACTGAAAATCACT… FkbM family methyltransferase
2492_slr0909-sacB ATGATTAAACAATTATTAAAAAATA… FkbM family methyltransferase
0343_slr1069-sacB GTGGGCAATGAACAAAAAACAGTAT… FkbM family methyltransferase
1874_sll1530-sacB ATGTTTAACAGAATCAAAGATAAAC… FkbM family methyltransferase
0907_sll1456-sacB ATGCAAAAATTTTTTAAACAATTAC… FkbM family methyltransferase
1478_slr2119-sacB ATGAGTTTTTCTGAACATCATCTTG… FkbM family methyltransferase
1701_sll1174-sacB ATGCGCGTTGAACCCTGTTGCCAAG… FkbM family methyltransferase
1702_sll1173-sacB ATGGCCCAGGCTCTGTTGAATAACG… FkbM family methyltransferase
0480_slr1761-sacB ATGAGGGGAAGAACCCATGGGATAA… FKBP-type peptidyl-prolyl cis-trans isomerase ytfC
1891_sll1521-sacB GTGGGAATCCATGCAAAACTGGAGA… flavin oxidoreductase flv1
2212_slr0001-sacB GTGCTAGACGAACAAGCAAAGAAAA… flavin reductase family protein
2225_slr0013-sacB ATGAAGCTCATCGATTCCCGTGGCA… flavin reductase family protein
1369_sll0248-codA ATGACAAAAATTGGACTTTTTTACG… flavodoxin isiB
2515_sll0550-sacB ATGTTCACTACCCCCCTCCCCCCCC… flavoprotein flv3
0368_sll1021-sacB ATGCAAAGTAAATTTTGGTTTGAAT… flotillin family protein
0273_sll1192-sacB ATGAATCCTTTATTGCAATGGTTGG… fluoride efflux transporter CrcB crcB
0382_slr0679-sacB ATGATTTCGGCTCGACAATTGGCCT… Fmu and Fmv protein fmu/fmv
2385_slr0635-sacB ATGGCCCTTCCCTTTGACCTGGAGC… folate-binding protein
2394_slr0642-sacB GTGCTTGTTGCTATGTCCATGACCC… folate/biopterin family MFS transporter fbt
1321_sll1612-sacB ATGGATATCAACACCCTACTGGAAC… folyl-polyglutamate synthetase folC
0586_sll0990-sacB ATGAAATCCCGTGCCGCCGTTGCCT… formaldehyde dehydrogenase (glutathione)
1806_slr1689-sacB GTGCCAGAACTACCAGAAGTTGAAA… formamidopyrimidine-DNA glycosylase mutM
0971_sll1359-sacB ATGAAAATAGGAAGAATTACGGCCT… Formate dehydrogenase, c-type cytochrome
1579_slr1342-sacB ATGGCTGACCCCACCAAAATCATTG… four-carbon acid sugar kinase family protein
0983_slr1448-sacB ATGGCTGAGGTTGTCTGTTTTGGAG… fructokinase cscK
2992_slr1563-sacB GTGCCCGTGAATTCCCCAGCCCCCT… fructosamine kinase family protein
1840_slr0952-sacB ATGACCGTTAGTGAGATTCATATTC… fructose 16-bisphosphatase fbp
2216_sll0018-sacB ATGGCTCTTGTACCAATGAGACTGC… fructose-16-bisphosphate aldolase cbbA
1825_slr0943-sacB GTGATGACTCTCGAACCAAACCAGG… fructose-bisphosphate aldolase fda
0292_slr0964-sacB ATGGATTTTGCCTCCGGTTTACCCA… FTR1 family protein
3014_sll1482-sacB ATGAAAATTCCCCTTGCCTGGCACC… FtsX-like permease family protein
3148_slr0594-sacB GTGATTGAATTTCGGGAAAGTCTCA… FtsX-like permease family protein
2232_slr0018-sacB ATGGTAAATTCCCACCGCCTTGAAA… fumarase fumC
0268_slr1298-sacB ATGCTGGCTAAGCTCCGCCAACGCC… FUSC family protein
2818_sll0041-codA ATGACCCAAAATCCTTCCTCCGATC… GAF domain-containing protein trs or cheD
0616_slr1385-sacB ATGAGTATCTACGATCCCAACCCAG… GAF domain-containing protein