Plasmids and Cultures

This database contains entries for 3,572 known and predicted gene coding sequences in Synechocystis sp PCC 6803 based on the Kazusa genome sequence and nomenclature (http://genome.microbedb.jp/cyanobase/GCA_000009725.1). Plasmids for generating marked mutants and mutant strains can be searched for by gene Name/Accession (e.g. 'sll1226' or '1513_sll1226-sacB'),  gene homology (e.g. 'hydrogenase large subunit'), Gene ID (e.g. hoxH), or by a portion of the gene coding sequence Sequence (CDS).

Please note, the library is still being completed. Plasmids and/or marked mutants may not be available. Users can also search for available materials by Plasmids made or Mutant made.

Plasmids, mutants and the unmarking spacer plasmid pUC19K-UL are currently available on request. Regardless of the segregation status of the mutant, open reception of a cyanobacterial mutant strain we recommend 1-2 cycles of restreaking on a selection plate containing kanamycin (100 μg/ml).

Name Sort descending CDS Gene Homology Gene ID
0401_slr0689-sacB ATGGCGACGATCGCCGAGATTAATG… hypothetical protein
0402_sll0639-sacB ATGGCTTCTGTTTCCTCCCAGCCTG… bifunctional oligoribonuclease/PAP phosphatase NrnA nrnA
0403_sll0638-sacB ATGAAAACTACCACACACAGCAGGG… CHAT domain-containing protein
0404_slr0692-sacB ATGTCGGAACTTAGCCTGGCCCATC… AAA family ATPase ycf45
0405_sll0635-sacB ATGCAACAAGCTTCCCCCACGGCGA… thiamin biosynthetic bifunctional enzyme thiE
0406_sll0634-sacB GTGGATTTATTTCAAACTTTTCAGA… BtpA/SgcQ family protein btpA
0407_slr0695-sacB ATGAGAAAAAGACTCACCCGTTTCC… hypothetical protein
0408_slr1590-sacB GTGAGTAAGCCAATCTTTAAGTTAG… hypothetical protein
0409_slr1591-sacB ATGGCCAAAAAACTATTACTGGTGG… hypothetical protein
0410_slr1592-sacB GTGCTGGACTTCTACTCCCAACGCT… RluA family pseudouridine synthase
0411_slr1593-sacB ATGTTTATATTTCCACGCTTTCCCC… EAL domain-containing protein
0412_slr1594-sacB ATGACTGCTTTGATCTTGCCTTTTT… PatA subfamily rre5
0413_slr1595-sacB ATGGACACCAATACTTTACTGCTAA… Na/H antiporter rre5
0414_sll1516-sacB ATGGGCAAAACCCCCCTGGGACTGA… hypothetical protein
0415_slr1596-sacB ATGGATTTAACAAATTGGTGGCAAG… proton extrusion protein PcxA pxcA
0416_sll1515-sacB ATGCAATTAAGTTACCGTGGAGTCA… DUF4278 domain-containing protein
0417_slr1597-sacB ATGGCCAAAATCATTAGCACCGTCA… ParA family protein
0418_sll1514-sacB ATGTCTCTCATTCTTTACAATCCCC… Hsp20/alpha crystallin family protein hsp17
0419_sll1513-sacB ATGAATCTAGTCAGCCTCGAAAGTT… c-type cytochrome synthesis protein ccsA
0420_sll1512-sacB ATGGAAAAGGTTTTCCCTCATACTG… HxlR family transcriptional regulator
0421_slr1598-sacB GTGACCGTCAAACCGGATTGGCTCC… lipoic acid synthetase lipA
0422_sll1511-sacB ATGACGCTGTTAAGTAAACTCCTAG… hypothetical protein
0423_sll1510-sacB ATGGCATCATTAATCAGCTTTTGGT… sterol desaturase family protein
0424_sll1509-sacB ATGCAGCGCACCCGATTAAATACCA… Ycf20-like protein ycf20
0425_slr1599-sacB GTGAGTATTCCCCTGGCTACGGGAT… hypothetical protein
0426_slr1600-sacB ATGGACGATACTAACACCACATTAC… hypothetical protein
0427_smr0005-codA ATGGCATTATCCGACACCCAAATTT… photosystem I PsaM subunit psaM
0428_slr1601-sacB ATGACTGCCCAAACTTTCAAACCCA… hypothetical protein
0429_sll1508-sacB ATGGGACATACTATCAAAGCACCTC… UDP-3-o-acyl N-acetylglcosamine deacetylase lpxC
0430_sll1507-sacB GTGGATTTAGTGGTTATGAATGTGC… alpha/beta hydrolase
0431_slr1603-sacB ATGATTGTCGCCTCCGAGGGCAGTG… hypothetical protein
0432_slr1604-sacB GTGAGCAAAAATAATAAAAAATGGC… cell division protein; FtsH ftsH
0433_ssr2699-sacB GTGAAAAAGGCTGGCGCTGGACAAG… transposase
0434_ssl2923-sacB ATGAAGTATTTACTAGATACGAATA… virulence associated protein C vapC
0435_ssl2922-sacB ATGAACACAGCTCAAATTAGCACCG… virulence associated protein B vapB
0436_ssl2920-sacB ATGCTAAAAACATCAGAATTTCAAA… hypothetical protein
0437_sll1505-sacB ATGCAACGTAATCAAGAATCCCTTA… DUF86 domain-containing protein
0438_sll1504-sacB ATGGAAACAACAAATTTACCGATGG… hypothetical protein
0439_sll1503-sacB ATGAAGTTTGCAACCTATGAGCATT… hypothetical protein
0440_sll1502-sacB ATGCCCTGCCACGAAGGTCTTCACC… glutamate synthase (ferredoxin) gltB
0441_ssr2708-sacB ATGAGCGTAGCCCTAGATCGGCAAA… hypothetical protein
0442_ssr2711-sacB GTGGGTTTGCAACGGTGGCAGGGTA… hypothetical protein
0443_slr1608-sacB ATGTTGATCCCATTTCTGTTTAAGC… glucose dehydrogenase-B gdhB
0444_sll1501-sacB ATGACGGTAATTATTGCGGGGGAAA… cobyrinic acid ac-diamide synthase cbiA/ cobB
0445_sll1500-sacB ATGTTGACAGTTTATACCCAGTCTG… TIGR00303 family protein
0446_slr1609-sacB GTGGACAGTGGCCATGGCGCTCAAT… long-chain-fatty-acid CoA ligase
0447_slr1041-sacB ATGCAGGGAACCCTGAACGAAATTG… PatA subfamily rre6
0448_slr1042-sacB ATGATGGAAAATAAACCAGGCAGGA… CheY subfamily
0449_slr1043-sacB GTGGGGAAATCTATGGTTAGTTCTA… hypothetical protein
0450_slr1044-sacB ATGGCAACAGAAACCAATTTTTCGC… methyl-accepting chemotaxis protein mcpA
0451_slr1045-sacB ATGTCGGATCGAGGCTCTCGCCACT… ABC transporter permease
0452_slr1046-sacB ATGGCATTGACCTTGGTTATGGGAG… TatA/E family twin arginine-targeting protein translocase pilA3
0453_slr1047-sacB ATGCAAAATCTTTCCCTGCAAAAAG… diguanylate cyclase pleD
0454_slr1048-sacB ATGGTGCCCCAACAATTAATTTTAA… exonuclease subunit SbcC sbcC
0455_sll1011-sacB GTGGGCCATTGCACAGCGGTGATTA… hypothetical protein
0456_ssr1736-sacB ATGGCAGTTCCCAAGAAGAAAACCT… 50S ribosomal protein L32 rps32
0457_slr1050-sacB ATGCTTAACCAGTTCCCGAAGCTTC… phospholipid carrier-dependent glycosyltransferase
0458_slr1051-sacB ATGGCTCCCCAGACTAATTTTTCAG… enoyl-acyl-carrier-protein reductase envM/fabl
0459_slr1052-sacB ATGGGATCCGAGTATCAAGGCCAAT… tetratricopeptide repeat protein
0460_slr1053-sacB ATGGAATGGTTCGCCATTGCCCTGT… DUF2993 domain-containing protein
0461_sll1009-sacB ATGGCTCTCATTAACGGAACGAATG… iron-regulated protein frpC
0462_slr1055-sacB ATGTTTACTAACGTCAAGTCCACCA… Mg-chelatase subunit; ChlH chlH
0463_slr1056-sacB ATGGAATTAAAAAGTGTTAAATTAA… ATP-dependent endonuclease
0464_sll1006-sacB ATGGAGGAAAATTTGGGCATGGACA… hypothetical protein
0465_sll1005-sacB ATGGATGCCACTGCCCCCATTCTCC… regulatory protein for beta-lactamase
0466_sll1004-sacB ATGCTGATCATTGCCATACTCTGCT… glycosyltransferase
0467_sll1003-sacB ATGTCTGTTTTCTTGCTCGGTTCTG… sensory transduction histidine kinase hik13
0468_ssl1923-sacB GTGTTGCGTCTGTTAAACCGTCGCT… DUF4351 domain-containing protein
0469_ssl1922-sacB ATGGCGAACGCTCTATGGTTATTTT… transposase
0470_ssl1920-sacB ATGATACCGAGAGAATTTTACAGCA… transposase
0471_sll1002-sacB ATGCTCAGACCCCGCACCATCAAAG… MCE family protein ycf22
0472_sll1001-sacB ATGACGGAACCCCTTATTCAACTCC… ABC transporter
0473_ssl1918-sacB GTGTTATTTACAGGCACGGCTATGG… hypothetical protein
0474_slr1753-sacB GTGGTGGAAATATTGTTAATTTCAC… CHAT domain-containing protein
0475_slr1755-sacB GTGGTCATAATGGAGGCGAAGTCAA… NAD+ dependent glycerol-3-phosphate dehydrogenase gpsA
0476_sll1647-sacB GTGATCCCATCTGACCTTTTCCTAC… N-acetyltransferase
0477_slr1756-sacB ATGGCCAGAACCCCCCAGGAAGTCC… glutamate--ammonia ligase glnA
0478_slr1759-sacB ATGGTTATTAGTGCCACTGTGATAT… hybrid sensory kinase hik14
0479_slr1760-sacB ATGAATCTGCCTCAACCAATAGAAA… regulatory components of sensory transduction system rre8
0480_slr1761-sacB ATGAGGGGAAGAACCCATGGGATAA… FKBP-type peptidyl-prolyl cis-trans isomerase ytfC
0481_sll1643-sacB GTGGATAAAGCCCAATTACGAGCCC… 5-formyltetrahydrofolate cyclo-ligase
0482_slr1762-sacB GTGTATCTGGAAAAACTCACCGTGG… HAD family hydrolase
0483_slr1763-sacB ATGCAGTGCCGTGTTTGTGATTCTA… class I SAM-dependent methyltransferase
0484_sll1642-sacB ATGATGGATTTAGGGGAGTGCTTGC… hypothetical protein
0485_slr1764-sacB ATGTTAAGCTTAGAAAAAGGTCAGT… cAMP binding protein capA
0486_sll1641-sacB ATGGTGCATAAAAAAATTGACCTCA… glutamate decarboxylase gad
0487_ssr2962-sacB ATGAATAGCTTACTGTCTCGCATTA… DUF433 domain-containing protein
0488_slr1767-sacB ATGAATATTTGGGTTGATGCTCAAC… hypothetical protein
0489_sll1640-sacB ATGATTTATCTAACCCGTCTTCAGC… carbon-nitrogen hydrolase family protein
0490_sll1639-sacB ATGGTTGAATGCTTGGTGCAGGCTC… urease accessory protein D ureD
0491_sll1638-sacB ATGTCTCGTTTACGTTCGTTACTTT… photosystem II protein PsbQ psbQ
0492_slr1768-sacB ATGGGTGCTGTTATCTCGGCGATCG… prohibitin family protein
0493_sll1636-sacB GTGCCTGGCGGGATTAACCCCCATT… ferripyochelin binding protein fbp
0494_slr1770-sacB ATGCACTATACCTTTGATATTTTGG… hypothetical protein
0495_slr1771-sacB ATGGTTACCAGGGATGGGATCCGCT… CocE/NonD family hydrolase
0496_sll1635-sacB ATGGATGTTCGTTTCATTTCCCTCA… FAD-dependent thymidylate synthase
0497_sml0005-sacB ATGGAAACAATTTATTTGCTCGCTA… photosystem II PsbK protein psbK
0498_sll1752-sacB ATGACCAATTCTCCCCTGGCGATCG… 1-acyl-sn-glycerol-3-phosphate acyltransferase
0499_ssr3122-sacB ATGATTAGTCTTGATCAAGTCAAAC… BolA family transcriptional regulator
0500_slr1846-sacB ATGAATCCGGAAACGAAAGCAAGAA… Grx4 family monothiol glutaredoxin grxD
0501_slr1847-sacB ATGGCACAAGGTAAAGGTTTCGGAT… YbaB/EbfC family nucleoid-associated protein
0502_slr1848-sacB GTGACTCGTATTCTTAAGCTCTCGC… histidinol dehydrogenase hisD
0503_slr1849-sacB ATGAATAATTCTACTGTCTCTAGTA… mercuric reductase merA
0504_sll1751-sacB ATGGCTGTTGAACCCATTCCCCCAA… hypothetical protein
0505_sll1750-sacB ATGAGTTATCGGATGGACCGCCACA… urease alpha subunit ureC
0506_sll1749-sacB ATGGAATCTCAACTGCAATTCCCCA… DUF29 domain-containing protein
0507_slr1851-sacB ATGAAAACTATGGATGCCCAGGAAA… pentapeptide repeat-containing protein
0508_ssr3129-sacB ATGTGTTTTTTTATTATCCAAGAGG… hypothetical protein
0509_sll1946-sacB ATGGTTAAGCAAATTTTGTCTAAAT… phospholipid carrier-dependent glycosyltransferase
0510_slr2032-sacB ATGAGTGCAAACCTTGCCCAACTCC… DUF561 domain-containing protein ycf23
0511_sll1945-sacB ATGCACATCAGCGAACTGACCCACC… 1-deoxy-D-xylulose-5-phosphate synthase
0512_slr2033-sacB ATGAGTGAGCGTCCCCCTGAAAAGA… rubredoxin rubA
0513_slr2034-sacB ATGCCTGTTAAATTCCCCAGTTTGA… photosynthesis system II assembly factor Ycf48 ycf48
0514_ssr3451-sacB ATGTCAGGGACTACCGGCGAGCGTC… cytochrome b559 a subunit psbE
0515_smr0006-sacB ATGGCAACCCAAAATCCTAATCAAC… cytochrome b559 b subunit psbF
0516_smr0007-sacB ATGGACAGAAATTCAAACCCAAACC… photosystem II PsbL protein psbL
0517_smr0008-sacB ATGTTCGCAGAAGGCAGAATCCCTT… photosystem II PsbJ protein psbJ
0518_slr2035-sacB ATGACAATGGCAATGCAACCCCAAA… glutamate 5-kinase proB
0519_ssr3452-sacB ATGGTTGCCCCCGTCAAGCAAAAGA… transposase
0520_slr2036-sacB ATGATATCAAATTTTGGACATATTG… transposase
0521_slr2037-sacB GTGCGATTCAACGATTCTGAGCTTC… hypothetical protein
0522_slr2038-sacB ATGCCTATTACAGAATTAGCCCCCG… Uma2 family endonuclease
0523_sll1942-sacB ATGGGCAACATCTTTTTTCCGTGGG… hypothetical protein
0524_sll1941-sacB GTGGGGAGGAGAATCAGCCTTTCCA… DNA gyrase A subunit gyrA
0525_slr2041-sacB GTGGAGATCGGTGGGGATAATTTGA… cell division response regulator; DivK rre42/divK
0526_slr2042-sacB ATGTTGCCCACTGCCATTGTCCTCA… zinc-dependent peptidase
0527_sll1940-sacB ATGTTTAGATTATTCAATTCGGGGA… peptidase
0528_sll1939-sacB ATGACAATATCCCAGGCTCAAAAGG… hypothetical protein
0529_ssr3465-sacB ATGTTTAAACAATTAGGAGTTCTGG… hypothetical protein
0530_sll1938-sacB ATGGCAACCCTAACCCCGCCAATTA… Uma2 family endonuclease
0531_sll1937-sacB ATGAGTCTTCCCACTCCTTCCCTTG… ferric uptake regulation protein fur
0532_slr2043-sacB ATGTTCATTTTCCCCGCTGTTCCCC… periplasmic binding protein component of an ABC type zinc uptake transporter zntC
0533_slr2044-sacB ATGCTAACAGTGCCCAGCCCTAATG… metal ABC transporter ATP-binding protein
0534_slr2045-sacB ATGCAACCAATGGCCAGGGGCATAC… metal ABC transporter permease
0535_ssr3467-sacB GTGGCTATTCTCGTTCCTTCCGCTC… hypothetical protein
0536_slr2046-sacB ATGAGCGTCTACAATCTTGATTTGT… cadherin
0537_slr2047-sacB ATGTCCCAAACCACCGCTACCCTGC… phosphate starvation-inducible protein phoH
0538_slr2048-sacB ATGCCAAGCCGTCCCTTGGGGCGGA… tetratricopeptide repeat protein
0539_slr2049-sacB GTGGATGCAATGGAATTCTTTCGCA… Cyanobacterial Signature Protein Chromophore lyase CpcS/CpeS 2
0540_slr2051-codA GTGAGGGTAGAAGGTTATGAAATTG… phycobilisome rod-core linker polypeptide; CpcG cpcG1
0541_slr2052-sacB ATGATTGCCCCTATTTGCCGTGCTC… hypothetical protein
0542_sll1934-sacB ATGAATGCGGCAGAACAAGCCATTG… hypothetical protein
0543_slr2053-sacB GTGAAAATTTCCGAACAGACCCTTG… alpha/beta fold hydrolase
0544_sll1933-sacB ATGGAACAAGTGCGGAATTATTATC… DnaJ protein dnaJ
0545_sll1932-sacB GTGTTAACGAGTATTAACCGCTCTG… DnaK protein dnaK
0546_sll1931-sacB GTGAATCAAACCAACCTCGACTTTT… serine hydroxymethyltransferase gylA
0547_sll1930-sacB ATGTTAAGAGAACTAATTAAGCTCT… transposase
0548_sll1929-sacB ATGCGCTTCCATCCCCTGGCCTTAA… DUF4131 domain-containing protein comEc
0549_slr1906-sacB ATGGTCAAGTCCACCCCTTCTCCTC… GNAT family N-acetyltransferase
0550_slr1907-sacB ATGGAGTTGGCGGGCTTGGCTATGG… hypothetical protein
0551_slr1908-sacB ATGAATAAGTTGACCAGTCATTTAC… hypothetical protein
0552_slr1909-sacB ATGAGCCAATCTAAGGAAAATTATC… NarL subfamily rre9
0553_slr1910-sacB ATGAACTACTTTTCCTGTTCCCTGC… N-acetylmuramoyl-L-alanine amidase amiA
0554_slr1911-sacB ATGTTTTCCCCCGACCCCATACTTC… hypothetical protein
0555_sll1837-sacB ATGGTTAATAAAGGGTTATGGTCTG… DUF1036 domain-containing protein
0556_slr1912-sacB ATGATGTCGTTTAACCCCCAGATTG… anti-sigma F factor antagonist
0557_slr1913-sacB GTGTCTTCCCCGAAAAGCAAAGCCA… hypothetical protein
0558_slr1914-sacB GTGATGGTAGGTTCGGGGCAATGTG… hypothetical protein
0559_sll1835-sacB ATGGCAACTCACAACCTAGACAGGG… curli assembly protein CsgG csgG
0560_sll1834-sacB ATGATGTCTTTTTTAAGTCCCTTGT… membrane protein
0561_slr1915-sacB ATGAGTTTTTTTGATTCAGATATTA… Cyanobacterial Signature Protein
0562_slr1916-sacB ATGCCCACCCTGGATCTTTTGGGTT… alpha/beta hydrolase
0563_slr1917-sacB ATGGTCTCCCTGGAATCTTCCCCCC… alpha/beta fold hydrolase
0564_slr1918-sacB ATGTCAGCACTCCCAATCAAGCATT… molecular chaperone DnaJ dnaJ
0565_sll1833-sacB ATGGACTCCTCCCACCCAAAACTAA… penicillin-binding protein ftsI
0566_sll1832-sacB ATGTCTGCCTTACCCAAACCGGCCT… hypothetical protein
0567_sll1831-sacB GTGTTTTTCCCCATGGTCCCTATGT… glycolate oxidase subunit (Fe-S) protein glcF
0568_sll1830-sacB ATGATCAATCGTCAGGACCTCAAGC… hypothetical protein
0569_slr1919-sacB GTGCCTAACCCCAAACCCCTGCCAC… AarF/ABC1/UbiB kinase family protein
0570_slr1920-sacB ATGTTTCTCAAGATTTTTCAAAAGA… hypothetical protein
0571_sll0998-sacB ATGTCGGATATCCCGTTCACGCTGG… LysR transcriptional regulator
0572_ssl1911-sacB ATGTCTACTCAACAACAGGCTCGCG… hypothetical protein
0573_slr1019-sacB GTGTTCAATTCCCCAGTTAGACCTA… PhzF family phenazine biosynthesis isomerase
0574_sll0997-sacB ATGGCCCCGAAAAATTCCTGCCACA… hypothetical protein
0575_sll0996-sacB ATGAATGTTTCCCACCGTCGCTACC… tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB miaB
0576_slr1020-sacB ATGAGAGCTCTGGTTATTGGCGGTG… sulfolipid biosynthesis protein; SqdB sqdB
0577_ssr1698-sacB ATGGCTGATCCCCTCACCCCTGCTA… HugZ family protein
0578_sll0995-sacB ATGACCGTAGCCCTCGACCGAGAAA… Uma2 family endonuclease
0579_sll0994-sacB GTGCCCTCAACCAACTTCTTTGTCC… DUF1449 family protein
0580_sll0993-sacB ATGGGATTGGGATCATCAAGTCAGG… potassium channel
0581_slr1022-sacB GTGACCTATTCCCCTGTTGTTGAAT… N-acetylornithine aminotransferase argD
0582_slr1023-sacB ATGAAAAACCTTTGGCAATTGCCCG… cupin domain-containing protein
0583_slr1024-sacB ATGTCCCTAGAGCGTCAAACTTTAA… hypothetical protein
0584_slr1025-sacB ATGAAAAATAAGTTGGGAATAATAT… hypothetical protein
0585_sll0992-sacB ATGGAACGATTAGAACACCACGCCA… esterase
0586_sll0990-sacB ATGAAATCCCGTGCCGCCGTTGCCT… formaldehyde dehydrogenase (glutathione)
0587_slr1028-codA ATGAGTATAACTTTATCTGATCGCC… DUF4114 domain-containing protein
0588_slr1030-sacB ATGACTGCCACCCTTGCCGCCCCCA… Mg chelatase subunit; ChlI chlI
0589_slr1031-sacB ATGGTTGTAAATTCTGATCCCGATT… tyrosyl tRNA synthetase tyrS
0590_slr1032-sacB ATGCCCACCCCACAAGCACTGTATC… hypothetical protein
0591_slr1033-sacB ATGACAATACTTTTTACCAAAATTC… hypothetical protein
0592_ssr1720-sacB GTGCCGGAATTTTCCCTAGCTGAAA… tyrosyl tRNA synthetase tyrS
0593_slr1034-sacB ATGAACAGTTTTGTTTTAATGGCCA… thylakoid-associated single-stranded DNA-binding protein
0594_slr1035-sacB ATGGCGGATTCCCTTCCCAATTTAG… GIY-YIG nuclease family protein
0595_sll0986-sacB ATGATAAGGCATATGAGCGTGTTAC… transposase
0596_sll0985-sacB GTGATCATATTTATGAAGTTTTATT… PII-binding protein pamA
0597_sll0984-sacB ATGCACCATGTTTCTATTCGTACTG… Cyanobacterial Signature Protein (glyoxalase/bleomycin resistance/dioxygenase family protein)
0598_slr1037-sacB ATGTCCGAACTGAAAATCCTAATTG… response regulator involved in butanol tolerance (LysR family) rre10
0599_sll0983-sacB GTGCCCCGCCAGGCGATCGCCAATG… hypothetical protein
0600_sll0982-sacB ATGACTACCAACAACAGCACTTTGT… hypothetical protein