Plasmids and Cultures

This database contains entries for 3,572 known and predicted gene coding sequences in Synechocystis sp PCC 6803 based on the Kazusa genome sequence and nomenclature (http://genome.microbedb.jp/cyanobase/GCA_000009725.1). Plasmids for generating marked mutants and mutant strains can be searched for by gene Name/Accession (e.g. 'sll1226' or '1513_sll1226-sacB'),  gene homology (e.g. 'hydrogenase large subunit'), Gene ID (e.g. hoxH), or by a portion of the gene coding sequence Sequence (CDS).

Please note, the library is still being completed. Plasmids and/or marked mutants may not be available. Users can also search for available materials by Plasmids made or Mutant made.

Plasmids, mutants and the unmarking spacer plasmid pUC19K-UL are currently available on request. Regardless of the segregation status of the mutant, open reception of a cyanobacterial mutant strain we recommend 1-2 cycles of restreaking on a selection plate containing kanamycin (100 μg/ml).

Name Sort ascending CDS Gene Homology Gene ID
0172_sll1040-sacB ATGCCTATGGGTTGCCGATTTGCCA… mechanosensitive ion channel family protein
0171_sll1041-sacB ATGAGTGAACCAGTCCAGCCCATTA… ABC transporter
0170_sll1318-sacB ATGCCCTCGTCACCAGTTCAATTTA… hypothetical protein
0169_sll1319-sacB ATGCGAATTTTATCTAATGTTAATC… DMT family transporter
0168_slr1417-sacB ATGAGCCAAGCCACCGCTACCCAAG… iron-sulfur cluster assembly accessory protein
0167_slr1416-sacB ATGACCCGTCCCCTGTTTAACGAAC… MorR protein morR
0166_slr1415-sacB GTGGGTCTTGATCCGCCGTTGCCAA… DUF4350 domain-containing protein
0165_slr1414-sacB ATGTTCAGATTTGTTCAGGGGCAGG… sensory transduction histidine kinase hik11
0164_slr1413-sacB GTGGCTGATTCTGATCATTATCCAA… DUF697 domain-containing protein
0163_sll1321-sacB GTGACACCGCCAACTCCATCGTCCG… ATP synthase subunit I atp1
0162_sll1322-sacB ATGCAAGGGAGCCTCTCCTGGTTGC… ATP synthase subunit a atpI
0161_ssl2615-sacB ATGGATTCTACCGTTGCTGCTGCTT… ATP synthase subunit c atpH
0160_sll1323-sacB ATGTTTGATTTTGATGCCACCCTGC… ATP synthase subunit b atpG
0159_sll1324-sacB ATGCTTAATACCTTGTTCATCCTAG… ATP synthase subunit b atpF
0158_sll1325-sacB ATGAAAGGTTCCTTATACAGTAGTA… ATP synthase d subunit atpD
0157_sll1326-sacB ATGGTAAGCATTAGACCCGACGAAA… ATP synthase a subunit atpA
0156_sll1327-sacB ATGCCTAACCTTAAAGCGATTCGTG… ATP synthase g subunit atpC
0155_slr1411-sacB ATGGGTTTGATTGCCTATTTTGACT… nickel pincer cofactor biosynthesis protein LarC larC
0154_sll0216-sacB ATGGCCACCTTTTATAATCTTCACC… S41 family peptidase
0153_slr0257-sacB ATGAGTCCCCATTTGCTTTGTCTTC… carboxyl-terminal protease ctpB
0152_sll0217-sacB ATGGTTACCCTAATTGATTCTCCAA… potential FMN-protein flv4
0151_sll0218-sacB ATGCAACTCCTCTCAACCAATGTGG… hypothetical protein
0150_sll0219-sacB ATGATTTCTCCAATTGGTGGTCTTT… potential FMN-protein flv2
0149_sll0220-sacB ATGTGTGGCATCGTTGGTTACATCG… L-glutamine:D-fructose-6-P amidotransferase glmS
0148_sll0221-sacB ATGACAAGCAAAAAATTCTCCTGGC… bacterioferritin comigratory protein bcp
0147_slr0254-sacB ATGGCCCTGTTTAACCATTATCAGG… RDD family protein
0146_sml0004-codA ATGGACATTTTGACATTAGGTTGGG… cytochrome b6-f complex subunit; petN ycf6/petN
0145_sgl0002-sacB GTGGAAGCAACTCCTACTCCTGTCC… hypothetical protein
0144_sll0222-sacB ATGGGTCTTTCCCGTTTACCGGTGA… alkaline phosphatase phoA
0143_sll0223-sacB ATGGACTTTTCTAGTAACGTTGCAG… NADH dehydrogenase subunit 2 ndhB
0142_ssl0410-sacB ATGAGTGTAACTATAGAAACCGATT… hypothetical protein
0141_ssr0390-codA ATGCATAGCTTTTTGTTGGCCACCG… photosystem I subunit X psaK1
0140_slr0252-sacB ATGGTGGATAGCCTGGCAACCGTTT… precorrin-6A reductase
0139_slr0251-sacB GTGACAGGCTTTTTAGCGAGAACGG… ABC transporter lptB
0138_slr0250-sacB ATGGTTCGTTTGCTCATGGTATTCC… hypothetical protein
0137_slr0249-sacB ATGCTGTCAAAAACTATTCATGAAG… DUF1818 family protein
0136_sll0224-sacB ATGAAAAAATTTGCCTGTTTAGCCT… amino acid ABC transporter substrate-binding protein
0135_sll0225-sacB GTGGGGATTAATTTGCCCCAGCCCT… hypothetical protein
0134_sll0226-sacB ATGGGTGGACAGACGCTCGCAGAAT… photosystem I assembly protein Ycf4 ycf4
0133_sll0227-sacB ATGAGGATTTTACCGAATATCAGCC… peptidyl-prolyl cis-trans isomerase B ppiB
0132_sll0228-sacB ATGCATAGTCCTAATAAATTTACCT… arginase speB
0131_slr0245-sacB ATGGTCGCTATTATTTACAGCGCAG… acetylpolyamine aminohydolase
0130_sml0003-codA ATGCAAGTTAACAATCTCGGCTTTA… photosystem II PsbM protein psbM
0129_slr0244-sacB ATGCTTAGCAAAATTTTATACGCAG… universal stress protein
0128_sll0230-sacB GTGTGTCAAAATCTAGGGAAATTTG… MTH1187 family thiamine-binding protein
0127_slr0243-sacB ATGCGAAAATCACTTTCGGGCAAGC… hypothetical protein
0126_slr0242-sacB ATGGCCACTGCCTTAGAAACTAATC… bacterioferritin comigratory protein bcp
0125_slr0241-sacB ATGCACAGTATTTTGTTTGCCATTG… M56 family peptidase
0124_slr0240-sacB ATGAGCTGGATTCCCCCCTACCGTC… hypothetical protein
0123_slr0239-sacB ATGGATTCACAAAACTCTTCTTTTT… precorrin methylase cbiF, cobM
0122_ssl0426-sacB ATGATCTTTACAGGAAGCTTGAATG… transposase
0121_slr0238-sacB ATGAGATTAATTAAACAAATTGTGG… hypothetical protein
0120_slr0237-sacB GTGCCACAGTTGATATCTGTTCCCA… glycogen operon protein; GlgX glgX
0119_slr0236-sacB ATGTTGTTGCTCCAATTCAGCACTT… glutathione S-transferase family protein
0118_slr0744-codA ATGAACAACGCCAAAGTCAGAATTT… initiation factor IF-2 infB
0117_slr0743-sacB ATGTCTCTTGTTAGTTTACCGGGGC… N utilization substance protein nusA
0116_slr0742-sacB GTGCGGTCTGCCCCAATCTTGGACT… ribosome maturation factor RimP rimP
0115_slr0741-sacB ATGGCCGCCAGTTTATCCCAACAGA… a negative regulator of pho regulon phoU
0114_sll0696-sacB ATGCCAAAATCAACCGTTAATTTCA… CPBP family intramembrane metalloprotease
0113_slr0740-sacB ATGCTGGGAAATTTTCAACATAGCC… hypothetical protein
0112_slr0739-sacB ATGGTTGCCCAACAAACACGAACCG… geranylgeranyl pyrophosphate synthase crtE
0111_slr0738-sacB ATGATTTCCCCTGGGTTTTCTCACT… anthranilate synthetase alpha-subunit trpE
0110_slr0737-sacB ATGACAGAACTCTCTGGACAACCGC… photosystem I subunit II psaD
0109_sll0698-sacB ATGGGGACTTCTGTGTCCAATCCAA… sensor histidine kinase hik33/dspA
0108_sll0699-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
0107_sll0700-sacB ATGTTAAGAGAACTAATTAAGCTCT… transposase
0106_slr0734-sacB ATGCCAAACATTGCCGTTATTGGGG… FAD-binding oxidoreductase
0105_ssl1326-sacB ATGTCGAAGTCTAGTAACTTAAATT… CopG family transcriptional regulator
0104_slr0733-sacB ATGTTCCTCCCTTCCCCTAACAATT… integrase-recombinase protein xerC
0103_sll0702-sacB ATGGCCATCGTTATCAATTACCGTT… hypothetical protein
0102_sll0703-sacB ATGTACCAGCTAGTGATTATCGGGG… NAD(P)/FAD-dependent oxidoreductase
0101_slr0732-sacB ATGAAACCAATCCACAGATACATCA… hypothetical protein
0100_sll0704-sacB ATGAAAATTTACCTCGATTACAGTG… NifS protein nifS
0099_slr0731-sacB ATGACCCCAGAATTGAATCCTAATT… Cyanobacterial Signature Protein
0098_slr0730-sacB ATGGCCAGCACCCCCATCCAGAGCG… DUF3119 family protein
0097_slr0729-sacB ATGACCTCAACTACCCCAGAGATTG… Cyanobacterial Signature Protein
0096_slr0728-sacB GTGTGGGCCGCCCTGACCCTATGGT… O-antigen ligase family protein
0095_slr0727-sacB ATGATGACTGACTATCCTACCAATT… hypothetical protein
0094_slr0725-sacB GTGGCCCAGGTTGAATATCTGCGTC… type II toxin-antitoxin system YhaV family toxin
0093_slr0724-sacB ATGGCGGGAATATTATCCCCATGTT… type II toxin-antitoxin system PrlF family antitoxin HtaR suppressor protein, sohA
0092_slr0723-sacB ATGTATAAAGCCATTGCCGATGCCA… hypothetical protein
0091_slr0722-sacB ATGTTGGCCAAAGCGTTTGCGGGGT… 16S rRNA (uracil(1498)-N(3))-methyltransferase
0090_sll0708-sacB ATGGCTTTTCGACCCCGCAAACGCT… dimethyladenosine transferase ksgA, rsmA
0089_llaI.2-sacB GTGCGGAATGTGAGTAATATTATAT… llaI.2
0088_sll0710-sacB ATGTGGAACTTTTCGCAACTTAATC… hypothetical protein
0087_sll0711-sacB ATGCATTCCTACACCCTCCATGCCC… 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase
0086_sll0712-sacB ATGGATATTAAGCACGGCTTTGTGG… cysteine synthase cysM
0085_slr0721-sacB ATGGTTAGCCTCACCCCCAATCCGA… malic enzyme me
0084_sll0716-sacB ATGCAAAATTCCCCCATCCCTTCCC… leader peptidase I lepB
0083_sll1043-sacB ATGCAAGAGTTTGACAAGTCCATAT… polyribonucleotide nucleotidyltransferase pnp
0082_sll1045-sacB ATGACTTTTCCCAGCAAGCATAAAC… mutator MutT protein mutT
0081_slr1130-sacB GTGGCGGGGGTGGATGAAGTGGGGC… ribonuclease HII rhnB
0080_slr1129-sacB ATGCCAAAACAAATTGTCATTGCTG… ribonuclease E rne
0079_slr1128-sacB ATGGAAGCCTTTTTTCTCTTCTTTC… erthyrocyte band 7 integral membrane protein protein 7.2B stomatin
0078_slr1127-sacB ATGCCGTTAGAATGGAAAGGAGGGC… hypothetical protein
0077_sll1049-sacB GTGTCTATGGTTGTCGATTCTGTGC… transglutaminase family protein
0076_sll1051-sacB ATGGAGGGTAATAGCGTCGTAACTC… phycocyanin alpha phycocyanobilin lyase; CpcF cpcF
0075_sll1052-sacB ATGGCCATTAACACTTTTACTATTA… sulfite exporter TauE/SafE family protein
0074_slr1125-sacB ATGACTCACTTTGGTTTGCTCTGTC… zeaxanthin glucosyl transferase crtX
0073_slr1124-sacB ATGACCAAAGACGATGTGGCCCACC… phosphoglycerate mutase gpmB
0072_slr1123-sacB ATGGCTCCAGACCAAACTTCAGTAA… guanylate kinase gmk
0071_sll1053-sacB ATGACTGAGCCACCCGTACTGCACG… efflux RND transporter periplasmic adaptor subunit
0070_sll1054-sacB ATGATTGCCCCAGATTCATCCCCTC… NUDIX hydrolase
0069_slr1122-sacB ATGGCCGATTCTGCGCTACAACCTC… Cyanobacterial Signature Protein
0068_sll1056-sacB ATGCCTGACCCTTTTACCCTCCTTG… phosphoribosylformyl glycinamidine synthetase II purL
0067_sll1057-sacB ATGGTTGTAGCATGGACAACAAGGG… thioredoxin M trx
0066_sll1058-sacB ATGGCTAATCAAGATTTAATTCCTG… dihydrodipicolinate reductase dapB
0065_sll1059-sacB ATGCGATTAGTTATGCTCGGTGGCC… adenylate kinase adk
0064_slr1120-sacB ATGGATCCCCTGATTGCCCCCCTTG… type 4 prepilin peptidase hofD/tapD/pilD
0063_ssr1853-sacB ATGGATACCATCAAACAAATTAGCT… PepSY domain-containing protein
0062_ssl2069-sacB ATGAAAACTTTATTACTAACCTGGC… hypothetical protein
0061_sll1060-sacB GTGCCGTCAGCAGTTGGGGAATCAA… UPF0182 family protein
0060_sll1061-sacB ATGGATCGAATAGAACAAAAAGTTA… hypothetical protein
0059_sll1062-sacB ATGTCTAAATTTAGCAAATTACTAG… hypothetical protein
0058_slr1119-sacB ATGCAAACGATTTCCCCTGCGTCGA… hypothetical protein
0057_sll1063-sacB ATGACCGTACCTCCTCCCCTTTCCC… tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB tsaB
0056_slr1118-sacB GTGACCATTTCCCGCACCATTATCA… UDP-N-acetyl-D-mannosaminuronic acid transferase rffM
0055_sll1064-sacB ATGATTGTCACTAGTTTGTTATTAA… metallophosphoesterase family protein
0054_slr1117-sacB ATGAATCAGGAAAAATTATTGGCCC… class I SAM-dependent methyltransferase
0053_slr1116-sacB ATGCAAACAAAAAATTATTTCGAGC… damage-inducible protein DinB dinB
0052_slr1115-sacB GTGAGAAATGGCAAATTCCCTATCC… class I SAM-dependent methyltransferase
0051_slr1114-sacB ATGATTAATTTTTTCTCTACCCATA… hypothetical protein
0050_slr1113-sacB GTGTCCCCCATGGAATTAACCCCTG… ABC transporter
0049_slr1501-sacB GTGATGTCAACCACGCTAAATACCC… GNAT family N-acetyltransferase
0048_sll1392-sacB ATGTTAAATCCATCCACCATGCCGG… photosynthesis,Fe homeostasis andstress-responseregulator pfsR
0047_sll1393-sacB ATGTACATCGTTCAAATTGCCTCAG… glycogen (starch) synthase glgA
0046_sll1394-sacB ATGGGATTCTTCGATTTATTCGGTA… peptide methionine sulfoxide reductase msrA
0045_sll1395-sacB GTGGGACGAGAATTAGCCATTCCTT… dTDP-6-deoxy-L-mannose-dehydrogenase rfbD
0044_slr1498-sacB ATGAAATACGTTGATGAATATCGGG… hydrogenase isoenzymes formation protein; HypD hypD
0043_sll1396-sacB ATGAACTTTGATCTTTCAAAGCTAA… hypothetical protein
0042_sll1397-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
0041_slr1495-sacB ATGACATTAATTTCGTTAACTCCCC… ATP-dependent DNA helicase
0040_sll1398-sacB ATGGCTGAAATTCAATTTTCCAAGG… photosystem II 13 kD protein psb13
0039_sll1399-sacB GTGACGATGCGGCAGTCCCTTTCCC… DUF4336 domain-containing protein
0038_ssl2733-sacB ATGAACTACAGAAACTACATTACGA… DUF433 domain-containing protein
0037_sll1400-sacB ATGAAATTATTGTTTGACGAAAATC… hypothetical protein
0036_sll1401-sacB ATGAGATATAAGGTGGATCTAGAAA… hypothetical protein
0035_slr1494-sacB ATGCCACCTATCTATCAACTGCTTT… ABC transporter
0034_slr1493-sacB GTGGACCGATCGCCGCTAATGCCAT… DUF1636 domain-containing protein
0033_slr1492-sacB ATGTTAGTGGTGGCCTGTCAAAATC… iron(III) dicitrate-binding periplasmic protein fecB
0032_slr1491-sacB ATGCACAGATCGGGTCGTAGATTTA… iron(III) dicitrate-binding periplasmic protein fecB
0031_slr1490-sacB GTGCAAGGAGTGATTATGAATCAAG… ferrichrome-iron receptor fhuA
0030_slr1489-sacB ATGTCGATCTTTTTTTCTCAATCTG… regulatory protein; PchR pchR
0029_slr1488-sacB ATGCTCCTTTCGCCCCAGTCTAATC… ABC transporter
0028_slr1485-sacB ATGTTTAAATTTGCTCAAATTATTT… hypothetical protein
0027_slr1484-sacB ATGTCAATCTCTAATTTCTGCCTGA… TonB family protein
0026_sll1404-sacB ATGGCCGGGGGCATAGTGGCGGTGC… biopolymer transport ExbB protein exbB
0025_sll1405-sacB ATGACCAACCGGAGGAAAAAGAGTA… biopolymer transporter ExbD
0024_sll1406-sacB GTGAATACCAAAATAAGCTTAGGCT… ferrichrome-iron receptor fhuA2
0023_sll1407-sacB ATGAAAAAAAATGTTTACTACAGCA… SAM-dependent methyltransferase
0022_sll1408-sacB ATGAAAGATGTTAATGTATTTGATC… regulatory protein; PcrR pcrR
0021_sll1409-sacB GTGTGGGGAGCACAAAAAATGATCA… ferrichrome-iron receptor fhuA
0020_sll1202-sacB ATGAAAAAATATAAGATAAATTACT… iron-siderophore ABC transporter substrate-binding protein
0019_sll1203-sacB ATGATTAATTGTCAATTTTGTTCCG… sucrase ferredoxin
0018_sll1204-sacB ATGAAGACCTTTGTCACTCTTTGCT… MFS transporter
0017_sll1205-sacB ATGACCCTACTTCTTTCCGAGTCCG… regulatory protein; PchR pchR
0016_sll1206-sacB GTGGGAGGACGTGACATGAAAACAA… ferric aerobactin receptor iutA
0015_slr1319-sacB ATGAAAAGTAAACTAATAATTTTTA… iron(III) dicitrate transport system permease protein; FecB fecB
0014_slr1318-sacB ATGTTGGATGTTGCCACTCCCATTG… iron(III) dicitrate transport system permease protein; FecE fecE
0013_slr1317-sacB ATGTTTGCCCCTCGACCTTGGATTG… iron(III) dicitrate transport system permease protein; FecD fecD
0012_slr1316-sacB GTGCCCTTTCTCCAATGCATTATGC… iron(III) dicitrate transport system permease protein; FecC fecC
0011_slr1315-sacB GTGCAACCCAAGCAGAGGGCTGTCC… Uma2 family endonuclease
0010_sll1209-sacB ATGACCACCCCCGATCGCCTATTGC… DNA ligase ligA
0009_slr1312-sacB ATGGGGGAAGAACCTGTGCCGGCGG… arginine decarboxylase speA
0008_slr1311-sacB ATGACAACGACTCTCCAACAGCGCG… photosystem II D1 protein psbA2
0007_sll1212-sacB ATGTCAAAGTCTAAAGTTGTTTTGC… GDP-D-mannose dehydratase rfbD
0006_sll1213-sacB ATGCTTTCCCTAGAAAATCAACGTA… GDP-L-fucose synthase
0005_sll1214-sacB ATGGTTAATACCCTCGAAAAGCCCG… magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase
0004_sll0558-sacB ATGTCTGATAATTTGACCGAACTCT… Ycf53-like protein
0003_slr0613-sacB ATGTCCTATCTAATCGCTGTGGTAG… Cyanobacterial Signature Protein
0002_slr0612-sacB GTGGGGCGTTTGGATCAAGATAGCG… pseudouridine synthase
0001_slr0611-sacB ATGATCTCCACTACCTCCCTGTTTG… solanesyl diphosphate synthase sds