Plasmids and Cultures

This database contains entries for 3,572 known and predicted gene coding sequences in Synechocystis sp PCC 6803 based on the Kazusa genome sequence and nomenclature (http://genome.microbedb.jp/cyanobase/GCA_000009725.1). Plasmids for generating marked mutants and mutant strains can be searched for by gene Name/Accession (e.g. 'sll1226' or '1513_sll1226-sacB'),  gene homology (e.g. 'hydrogenase large subunit'), Gene ID (e.g. hoxH), or by a portion of the gene coding sequence Sequence (CDS).

Please note, the library is still being completed. Plasmids and/or marked mutants may not be available. Users can also search for available materials by Plasmids made or Mutant made.

Plasmids, mutants and the unmarking spacer plasmid pUC19K-UL are currently available on request. Regardless of the segregation status of the mutant, open reception of a cyanobacterial mutant strain we recommend 1-2 cycles of restreaking on a selection plate containing kanamycin (100 μg/ml).

Name CDS Gene Homology Sort descending Gene ID
2458_ssl0350-sacB GTGAAATATACAATCGTTATTCAAT… type II toxin-antitoxin system HicA/B family antitoxin
2433_ssl0738-sacB ATGAAAGCTGAACTAACTGCAATTA… type II toxin-antitoxin system HicB family antitoxin
2471_ssr0336-sacB ATGATGGAAAATGTTCAAAACCATT… type II toxin-antitoxin system HicB family antitoxin HicB/VapC
0961_ssr2067-sacB GTGATTATGACTGTTAGTAATATTT… type II toxin-antitoxin system HicB family antitoxin
0352_ssr1765-sacB ATGAAAAAAGTAACCATGACAGTCA… type II toxin-antitoxin system HicB family antitoxin
2919_slr1420-sacB ATGGAGAAGGTTGACCAAGCAAAAT… type II toxin-antitoxin system HicB family antitoxin
3047_ssr1258-sacB ATGAACAAGCAAGAATTTTATGTTC… type II toxin-antitoxin system HicB family antitoxin
1983_ssl0259-sacB ATGAATTATCCAATTGTTATTTATC… type II toxin-antitoxin system HicB family antitoxin, type II toxin-antitoxin system HicA family toxin
3555_slr6100-sacB ATGCACATCATCTCGAAAACTGCCC… type II toxin-antitoxin system HigB family toxin
0336_slr1062-sacB ATGGATCTGAAGCAGGCAGAAGTCG… type II toxin-antitoxin system PemK/MazF family toxin
0950_sll1130-sacB ATGAATACAATTTACGAACAATTTG… type II toxin-antitoxin system PemK/MazF family toxin
2910_ssl1004-sacB ATGATCGGAGTTAGCGTTAATCCAG… type II toxin-antitoxin system Phd/YefM family antitoxin
1463_ssr3571-sacB ATGGAAACCATTAATTATCAACAAT… type II toxin-antitoxin system Phd/YefM family antitoxin
1888_ssr2754-sacB ATGAAAGCAATTACAACCACCCAAG… type II toxin-antitoxin system Phd/YefM family antitoxin, Txe/YoeB family addiction module toxin
1897_ssr0761-sacB ATGGGGGAAACTTTGCCCCAACAAT… type II toxin-antitoxin system prevent-host-death family antitoxin
3418_ssl5095-sacB ATGACTAATTCAGCAACCCAAGGTC… type II toxin-antitoxin system prevent-host-death family antitoxin
0093_slr0724-sacB ATGGCGGGAATATTATCCCCATGTT… type II toxin-antitoxin system PrlF family antitoxin HtaR suppressor protein, sohA
2978_slr0664-sacB ATGTCGAATAATCTCCATTTAGTCA… type II toxin-antitoxin system RelE/ParE family toxin
3207_ssl7039-sacB ATGATTGAAATCCGGCAAACAGAAA… type II toxin-antitoxin system RelE/ParE family toxin
2909_sll0525-sacB GTGAAACTTTTGTTGGATACCCAGT… type II toxin-antitoxin system VapC family toxin
3417_sll5094-sacB ATGAAGGGTTGGCTATTGGATACCA… type II toxin-antitoxin system VapC family toxin
2252_sll0205-codA ATGCTACTGGACACCCACACGCTTT… type II toxin-antitoxin system VapC family toxin
1759_sll1092-sacB ATGAATTCTGTTTTGATAGACACCC… type II toxin-antitoxin system VapC family toxin
1894_sll0428-sacB ATGATTATTGAAGAGATTGTCAATA… type II toxin-antitoxin system VapC family toxin, BrnT family toxin
0094_slr0725-sacB GTGGCCCAGGTTGAATATCTGCGTC… type II toxin-antitoxin system YhaV family toxin
1542_slr0812-sacB GTGGAAACATCAAAGCCGGGTTGTG… type III pantothenate kinase
3255_sll7087-sacB TTGACTGTTCTCTTATTATCAATTT… type III-B CRISPR module RAMP protein Cmr4
3258_sll7090-sacB GTGTCTGAAGTTTACTGGCAAGCAA… type III-B CRISPR-associated protein Cas10/Cmr2
1700_slr1277-sacB GTGAGGAGCAATTCTGTGAAAAATT… type IV pilus secretin PilQ gspD/pilQ
0589_slr1031-sacB ATGGTTGTAAATTCTGATCCCGATT… tyrosyl tRNA synthetase tyrS
0592_ssr1720-sacB GTGCCGGAATTTTCCCTAGCTGAAA… tyrosyl tRNA synthetase tyrS
0299_sll0936-sacB ATGGCCAGAGATTTACGGGGATTCA… UbiD family decarboxylase
0272_slr1300-sacB ATGACCTTTGTAGCCGCTTCCATAA… UbiH protein ubiH
2152_slr0776-sacB ATGGAATTTAGCCAACTCGTAGAAC… UDP-3-o-3-hydroxymyristoyl glucosamine n-acyltransferase lpxD
0429_sll1508-sacB ATGGGACATACTATCAAAGCACCTC… UDP-3-o-acyl N-acetylglcosamine deacetylase lpxC
1373_sll0244-sacB ATGGCCACGCAACAAACAATTTTGG… UDP-glucose 4-epimerase galE
0271_slr1299-sacB ATGCGTGTTTGTGTTATCGGAACGG… UDP-glucose dehydrogenase
0341_slr1067-sacB ATGACCCAGTCTTCCCCACCCAAAA… UDP-glucose-4-epimerase galE
0354_slr1078-sacB GTGGCCCAGGCCCACGTTCTCGGAT… UDP-glucose-4-epimerase galE
2846_slr0528-sacB ATGGTTAAGTTAGGGCAGTTATTGG… UDP-MurNac-tripeptide synthetase murE
0056_slr1118-sacB GTGACCATTTCCCGCACCATTATCA… UDP-N-acetyl-D-mannosaminuronic acid transferase rffM
1694_slr1271-sacB ATGGTCACCAACTTTGCTGAGCCAA… UDP-N-acetyl-D-mannosaminuronic acid transferase rffM
2925_slr1424-sacB ATGATTATTTCCCCCGCTACCCGTC… UDP-N-acetylenolpyruvoylglucosamine reductase
2231_slr0017-codA GTGCTTCAAGTTGCTACTCCTACCG… UDP-N-acetylglucosamine 1-carboxyvinyltransferase murZ
2658_slr0624-sacB ATGCCTGTATCTCCCCTATCGGTTT… UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)
2887_sll0899-sacB ATGGTGGCGGTTGCAGTATTAGCGG… UDP-N-acetylglucosamine pyrophosphorylase glmU
3065_slr1656-sacB GTGGGCTTATCAAAGGCTTGTGTAG… UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide)pyrophosphoryl-undecaprenol N-acetylglucosamine transferase murG
2924_slr1423-sacB GTGAGGAGCGTTGCTGTGGGTGCTG… UDP-N-acetylmuramate-alanine ligase murC
1135_sll2010-sacB ATGCCCCAGGCTTGTGTAATTGGGT… UDP-N-acetylmuramoylalanine--D-glutamate ligase murD
1593_slr1351-sacB ATGAACTCCAAACTTTCCCTATTTG… UDP-N-acetylmuramoylalanyl-D-glutamyl-2 6-diamino-pimelate-D-alanyl-D-alanine ligase murF
2473_sll0888-sacB ATGTTAGCGCTCCAACCCCGCTTTA… Uma2 family endonucleas
2806_sll0740-sacB ATGGCCAAACGGCGATCGACGCAAA… Uma2 family endonuclease
0730_sll1072-sacB GTGACTATGATGGAAAAAACGGAAA… Uma2 family endonuclease
1832_sll0913-sacB GTGAGAATAGTTACTATGCTTGCCT… Uma2 family endonuclease
0606_slr1378-sacB ATGGGAAAGTCCAGCCATTTCCCCC… Uma2 family endonuclease
1518_sll1222-sacB ATGAATGTTTTAACTGCTCCCATCA… Uma2 family endonuclease
0921_slr1752-sacB ATGGTTCAAACTGCCCTACTTCCCC… Uma2 family endonuclease
1584_sll1251-sacB ATGCCCTCCCACCCATCCCGCAGTA… Uma2 family endonuclease
0311_sll0925-sacB ATGGTTGCGCTCTCCTCCAATGGAT… Uma2 family endonuclease
1395_slr2084-sacB ATGGCCGTTAATCTAGAAACTCGCA… Uma2 family endonuclease
0578_sll0995-sacB ATGACCGTAGCCCTCGACCGAGAAA… Uma2 family endonuclease
0284_sll1186-sacB ATGTTGCTAGCCCTAGACCGCATCA… Uma2 family endonuclease
0317_slr0976-sacB ATGTCAGCAATAACGGCCCAGGAAC… Uma2 family endonuclease
0176_slr1095-sacB ATGACCGCCGCCCTCGACCAAATCA… Uma2 family endonuclease
1906_slr0445-sacB ATGGAAGATATTGCATTTATGCCAC… Uma2 family endonuclease
0522_slr2038-sacB ATGCCTATTACAGAATTAGCCCCCG… Uma2 family endonuclease
0901_sll1461-sacB ATGGTTATCGCCCCCCATCGCACTA… Uma2 family endonuclease
0321_slr0981-sacB ATGGCTACCGTTTTAGACCTTCAGC… Uma2 family endonuclease
1405_slr2092-sacB ATGGCTAGGTCTTTGGGCAGAACGC… Uma2 family endonuclease
2698_slr0300-sacB ATGTATTCCACCATCCTCAAGCTAA… Uma2 family endonuclease
0258_slr1290-sacB ATGATTGCTCACTCCCCATCTGCCC… Uma2 family endonuclease
2604_sll0488-sacB ATGGTTCAGGTCGTTGATGATCCGA… Uma2 family endonuclease
0357_slr1081-sacB ATGACCCTCACCGTTGCCATTCCCC… Uma2 family endonuclease
0011_slr1315-sacB GTGCAACCCAAGCAGAGGGCTGTCC… Uma2 family endonuclease
1032_slr0885-sacB ATGACAACTACCCTTAAACTACAGC… Uma2 family endonuclease
0359_slr1083-sacB ATGGTTACCCTGCTGAAATGGACAG… Uma2 family endonuclease
2261_sll0198-sacB ATGGGTCAAACCATCACTCCGCCTC… Uma2 family endonuclease
1505_sll1232-sacB ATGCTGCAAATTGCACCCCCATCGA… Uma2 family endonuclease
0530_sll1938-sacB ATGGCAACCCTAACCCCGCCAATTA… Uma2 family endonuclease
0329_slr1613-sacB ATGGTTTTTACATTAGAAAAGTCTC… Uma2 family endonuclease
1289_sll1956-sacB ATGATTCATGCTATTGAGACAACGT… Uma2 family endonuclease
0975_sll1355-sacB GTGCAGATAATGCAGTCACCTCTGC… Uma2 family endonuclease
2236_sll0007-sacB ATGGTTTTAGCCTCAGCAAAAGTAC… Uma2 family endonuclease
1325_sll1609-sacB ATGATGGTCGTTGCTACAACTAAAA… Uma2 family endonuclease
2727_slr0790-sacB GTGGGATTGTTGAGGCGATCATCGT… UmuC protein umuC
2244_sll0210-sacB ATGTCCCCCCGCCAATTAAATTTTC… undecaprenyl-diphosphate phosphatase
2066_sll0296-codA ATGGTTACTACTCCAGTAAAGACAC… unidentified open reading frame
0254_sll1654-sacB ATGTCGATCAATTGCTGGCGATCGC… universal stress protein
1657_sll1388-sacB ATGGGCTACGGAAAGATTTTAGTTG… universal stress protein
0182_slr1101-sacB ATGGATGAAATTTACCCCGCCGTGG… universal stress protein
0937_slr1230-sacB GTGAAAAATATTTTGCTTTGCACTG… universal stress protein
0376_slr0670-sacB ATGTTTAAGCATTGCCTCATTTGTA… universal stress protein
0129_slr0244-sacB ATGCTTAGCAAAATTTTATACGCAG… universal stress protein
2223_slr0011-codA GTGTTCATGCAAACTAAGCACATAG… unknown function rbcX
2789_slr0712-sacB ATGACCGCCTGGCAAAAGATACAAA… UPF0104 family protein
2798_ssl1255-sacB ATGGTTGATGGTCGTCCAATGCAAA… UPF0175 family protein
0061_sll1060-sacB GTGCCGTCAGCAGTTGGGGAATCAA… UPF0182 family protein
0190_sll1035-sacB ATGGCTTCTCAATTACGTGTTTATG… uracil phosphoribosyltransferase upp
2430_sll0374-sacB ATGGCTATGTTATCCTTTCCCCCAT… urea ABC transporter ATP-binding subunit UrtE urtE
0804_slr1201-sacB ATGCAAAATTCTGCCCCCCCTTCTG… urea ABC transporter permease subunit UrtC urtC
1911_slr0447-sacB ATGACTAACCCTTTTGGAAGACGTA… urea ABC transporter substrate-binding protein, negative aliphatic amidase regulator amiC/urtA
0490_sll1639-sacB ATGGTTGAATGCTTGGTGCAGGCTC… urease accessory protein D ureD
0924_slr1219-sacB ATGGTGATTTTTGATCATCGCCTAG… urease accessory protein E ureE
0779_slr1899-sacB GTGGGAGCCTACAACTATTCCGAAG… urease accessory protein F ureF
0395_sll0643-sacB ATGGCTCAAACTCCCCTCCGCATTG… urease accessory protein G ureG
0505_sll1750-sacB ATGAGTTATCGGATGGACCGCCACA… urease alpha subunit ureC
1907_sll0420-sacB ATGGCAACTATGATTCCTGGCGAAA… urease beta subunit ureB
1272_slr1256-sacB ATGCAGCTAAGCCCCCAGGAAAAAG… urease gamma subunit ureA
2109_slr0185-codA ATGACCGATTTGACCCTGGCCGCTC… uridine 5-monophosphate synthase umpS
1801_sll1558-sacB ATGAAAGCCATGATTTTGGCCGCCG… uridine diphosphateglucose pyrophosphorylase (UDP-glucose pyrophosphorylase)
1982_sll0144-sacB ATGGGGGGAATTTTGCGTTTAACCC… uridine monophosphate kinase pyrH
2426_sll0378-sacB GTGGTTGTTAGGTTGCAAAACGGAT… uroporphyrin-III C-methyltransferase cobA
2095_sll0166-sacB ATGGCTGAAAAACTACCTCACCCAC… uroporphyrin-III synthase hemD
2855_slr0536-sacB ATGACAGAAGCAAATGATTTGCCCT… uroporphyrinogen decarboxylase hemE
2912_slr0557-sacB ATGACCACTTCCCTGCCGCCCCAAT… valyl-tRNA synthetase valS
1601_sll1900-sacB ATGTACGGCCCAGATCCCCAAAATA… Vat family streptogramin A O-acetyltransferase act/vat
2088_sll0173-sacB ATGAGTCCCTTTCCAGCTAAATCCC… virginiamycin B hydrolase; Vgb vgb
0435_ssl2922-sacB ATGAACACAGCTCAAATTAGCACCG… virulence associated protein B vapB
0434_ssl2923-sacB ATGAAGTATTTACTAGATACGAATA… virulence associated protein C vapC
2362_sll0690-sacB GTGCAGTATCCTTATTTGCTAGACA… virulence associated protein C vapC
3398_sll5075-sacB ATGAAAGAAGACTTTGGTTTTACAC… VOC family protein
0223_sll1675-sacB ATGACCCTTTCTTCTGGTTTACCTA… VOC family protein
2400_slr0645-sacB ATGAGCGCTGAAGCTGTCATCGAAA… VWA domain-containing protein
3228_slr7060-sacB ATGAATACGCCCCAAGTTAGTTTTA… VWA domain-containing protein
2667_sll0103-sacB ATGCGTATCGACCTTTCCTTGCTTT… VWA domain-containing protein
1574_slr1338-sacB ATGTCAAACCAACGGGATTACACGC… VWA domain-containing protein
1285_slr2057-sacB ATGAAAAAGTACATTGCTGAATTTA… water channel protein apqZ
3312_slr8038-sacB ATGCCGTTTGAAGATGCCCTTGCGA… WD-repeat protein
2291_slr0439-sacB ATGAGTTATCTGAACCTAGACACAT… WD40 repeat domain-containing protein, IS630 family transposase
3420_sll5097-sacB ATGACGGCTCAAAATGTACTTTCCC… WYL domain-containing protein
3177_sll7009-sacB ATGAAATTTCAATACAATTCCTTAA… WYL domain-containing protein
3394_slr5071-sacB ATGGATGACAGGGATCTAGTAAAAA… XRE family transcriptional regulator
3433_slr5110-sacB ATGCTCTTGAGGGAGCAACCTTTTA… XRE family transcriptional regulator
2063_slr0329-sacB GTGCTGGTATGGCTCCCCTGGGGGG… xylose repressor xylR
0501_slr1847-sacB ATGGCACAAGGTAAAGGTTTCGGAT… YbaB/EbfC family nucleoid-associated protein
0799_sll1118-sacB ATGCTGACTTCCACAACGGATATTG… YbjQ family protein
0424_sll1509-sacB ATGCAGCGCACCCGATTAAATACCA… Ycf20-like protein ycf20
2170_ssl1417-sacB ATGGGTGATTTTTTAGCCAACGTTT… ycf33 gene product ycf33
2161_sll0760-sacB ATGAGTCAAACCCTCACCCCTCCCA… Ycf38 ycf38
2393_sll0608-sacB GTGAATGCTCTCTCAATTCCCACTT… Ycf49-like protein
1158_sll1702-sacB ATGGACGTTACCATTTATCTCCGTT… Ycf51-like protein
0004_sll0558-sacB ATGTCTGATAATTTGACCGAACTCT… Ycf53-like protein
0214_slr1780-sacB GTGGAAAGTTGGGCATTGACGACCC… Ycf54-like protein
2610_slr0503-sacB ATGGTAAATTTCGGGCTTAATTCAG… Ycf66-like protein
0788_sll1786-sacB ATGCATTTAGTTGATACCCATGTCC… YchF/TatD family DNA exonuclease
1328_sll1606-sacB ATGTTCGTTTTTCTCTCCAAACTTT… YdcF family protein
0898_sll1464-sacB GTGACTAATCCCTTTCTGAATTTGA… YdiU family protein
2042_slr0989-codA ATGGGCGGCCGTAAATGGCAGAGTA… YebC/PmpR family DNA-binding transcriptional regulator
1654_sll1390-sacB GTGGAGTTTCACCGGCAATTGCCCA… YgcG family protein
2908_slr0556-sacB ATGTTTTCCCCCAGCGTTTACTCAG… YggS family pyridoxal phosphate-dependent enzyme
0263_ssr2142-sacB ATGGACCTACTCCTTTCTACCCTCG… YggT family protein ycf19
2453_ssl0353-sacB ATGAATTATGCGGCGATCGTCGGCC… YggT family protein
2689_slr0119-sacB ATGGGGAACAATTTTGCCCAACTGA… YihY/virulence factor BrkB family protein brkB
1633_sll1880-sacB ATGATCTCCTCTGCCGCTACTTTTC… YjbQ family protein
2874_sll0496-sacB GTGATGTTCTTGTCTAAAACCTTGA… YjgP/YjgQ family permease
1028_slr0882-sacB GTGACTATGGCCGTTGGCACCTTCA… YjgP/YjgQ family permease
2812_slr0022-sacB ATGGCAACTTGGTATTGCATGCAGG… YkgJ family cysteine cluster protein
3571_slr0743a-sacB YlxR family protein
2736_sll0793-sacB ATGATTCTGCGATCACTGCTTTATT… YnfA family protein
2115_slr0362-codA GTGTTATTTAATCTCCCTATTTTCT… YqeG family HAD IIIA-type phosphatase
2440_sll0189-sacB ATGACGGATTTAGGACAGGCCGGGG… YraN family protein
1920_sll0268-sacB ATGAGGCCAGCATTTTCTCCCCTTC… YtxH domain-containing protein
2110_sll0154-codA ATGAGCCATAGCCGCTTTAAGTCCG… YvcK family protein
0074_slr1125-sacB ATGACTCACTTTGGTTTGCTCTGTC… zeaxanthin glucosyl transferase crtX
1822_slr0940-sacB ATGCGTGTTGCAATTGTGGGAGCAG… zeta-carotene desaturase precursor crtQ
0723_sll1076-sacB ATGGGATGGAAAACCATCTTTGTTG… Zinc exporter ziaA
2907_sll0528-sacB ATGTTAAGCCTCAGTTTAGGGGGGC… zinc metalloprotease
1379_slr0272-sacB ATGACTACTCCCGTTTTTTGTACTA… zinc ribbon domain-containing protein
1381_sll0243-sacB ATGATTGATTTTATTAAAAAAAAAG… zinc ribbon domain-containing protein
3130_slr1192-sacB ATGATTAAAGCCTACGCTGCCCTGG… zinc-containing alcohol dehydrogenase family
0526_slr2042-sacB ATGTTGCCCACTGCCATTGTCCTCA… zinc-dependent peptidase
2737_sll0792-sacB ATGAGTAAGTCCTCGTTGTCAAAGT… Zn(II)-sensing metalloregulatory transcriptional repressor, transcriptional repressor smtB/ziaR