Plasmids and Cultures

This database contains entries for 3,572 known and predicted gene coding sequences in Synechocystis sp PCC 6803 based on the Kazusa genome sequence and nomenclature (http://genome.microbedb.jp/cyanobase/GCA_000009725.1). Plasmids for generating marked mutants and mutant strains can be searched for by gene Name/Accession (e.g. 'sll1226' or '1513_sll1226-sacB'),  gene homology (e.g. 'hydrogenase large subunit'), Gene ID (e.g. hoxH), or by a portion of the gene coding sequence Sequence (CDS).

Please note, the library is still being completed. Plasmids and/or marked mutants may not be available. Users can also search for available materials by Plasmids made or Mutant made.

Plasmids, mutants and the unmarking spacer plasmid pUC19K-UL are currently available on request. Regardless of the segregation status of the mutant, open reception of a cyanobacterial mutant strain we recommend 1-2 cycles of restreaking on a selection plate containing kanamycin (100 μg/ml).

Name CDS Gene Homology Sort descending Gene ID
0293_slr0965-sacB ATGAAACTCATCTGTCGTCAAAGTG… DNA polymerase III beta subunit dnaN
1910_slr0446-sacB ATGAATCGCTTCCAATCTATCCTTG… DNA polymerase III subunit dnaX and dnaZ
0969_sll1360-sacB ATGGCCTACGAACCTCTGCACCATA… DNA polymerase III subunit dnaX
2521_sll0544-codA ATGCCCGTATATTTCTATTGGGGCG… DNA polymerase III subunit delta; holA holA
3279_ssl8005-sacB ATGAAACGCCAATCTGTCCTGCAAT… DNA polymerase subunit beta
1460_ssl2749-sacB ATGAAATGCCAATCAGTCCTGCAAT… DNA polymerase subunit beta
3340_slr5017-sacB ATGCTCTCAGTAACTCACCTCAAAA… DNA polymerase subunit beta
1651_sll1868-sacB ATGGATAACCTCCGTCTGCATCCAG… DNA primase dnaG
2239_slr0020-codA GTGCAATGTAGCTTGGTTGAGGTGT… DNA recombinase recG
1912_slr0448-sacB ATGGCTAAAGCCCGGACAAAGTTTG… DNA repair protein RadA sms/radA
2102_slr0181-sacB GTGAAAGGTATGGCCTTTGGGGAAT… DNA repair protein RecO RecO
1892_sll1520-sacB ATGCTACTATCCCTGCGGATCAATA… DNA repair protein; RecN recN
0772_slr1894-sacB ATGGCTACGATTAATATCGGCATTC… DNA starvation/stationary phase protection protein mrgA
1286_slr2058-sacB ATGTCCAAACTCGTTATCGTTGAAT… DNA topoisomerase I topA
2267_slr0231-codA ATGTTATTCCAAAGATTTTTGGACT… DNA-3-methyladenine glycosylase 2 family protein
3222_slr7054-sacB GTGTATATACATTTGAAGAGGGGGC… DNA-binding protein
3172_ssl7004-sacB ATGGCTAATTTAATTGTTCGCAATA… DNA-binding protein
2084_sll0176-codA ATGACGGCTATGTGTGGTTTTGGAT… DNA-binding transcriptional regulator, FrmR family
0889_slr1543-sacB GTGAATTTTGACCGCATTTTTGCTT… DNA-damage-inducible protein: MATE family efflux transporter
1868_ssl2982-sacB ATGACCAAGCGTAGTAATTTGGATT… DNA-directed RNA polymerase subunit omega
0798_slr1197-sacB ATGGCGAATTCTGAACAGGCCTATT… DNA-protecting protein DprA dprA
1838_sll0909-sacB ATGGACGACCTCACCATCTACACAA… DnaJ family molecular chaperone
0544_sll1933-sacB ATGGAACAAGTGCGGAATTATTATC… DnaJ protein dnaJ
2598_slr0093-sacB ATGGCATCAACAGATTTCAAAGACT… DnaJ protein dnaJ
0240_sll1666-sacB GTGTCTTCTAATCCCCATTCCACCC… DnaJ protein dnaJ
2891_sll0897-sacB ATGCCTGGGGATTATTACCAAACGC… DnaJ protein dnaJ
0545_sll1932-sacB GTGTTAACGAGTATTAACCGCTCTG… DnaK protein dnaK
2091_sll0170-sacB ATGGGAAAAGTTGTTGGGATTGACC… DnaK protein dnaK
2322_sll0058-sacB ATGGGCAAAGTCATTGGCATTGATT… DnaK protein dnaK
3086_slr0449-sacB ATGACTGTTGCTCCGGATCTGGCCC… DNR protein
2033_slr1943-codA ATGGTTACAAATTCACCAAGCCGGT… dolichol phosphate mannose synthase dpm1
1852_sll1540-sacB ATGGTCTATTTTCCCCTGCCATCGC… dolichyl-phosphate-mannose synthase dpm1
1331_slr1719-sacB ATGGACACCTTTGACGCTATTTACC… DrgA gene product drgA
2714_slr0313-sacB ATGAGCAAAGATCGCAACCACGGTT… DsbA family protein
2014_slr1933-sacB GTGAACGTGATTCCCACAACTATCG… dTDP-4-dehydrorhamnose 35-epimerase rfbC
0325_slr0985-sacB ATGACTACTATGGGAAGATTTTTGA… dTDP-6-deoxy-L-mannose-dehydrogenase rfbC
0045_sll1395-sacB GTGGGACGAGAATTAGCCATTCCTT… dTDP-6-deoxy-L-mannose-dehydrogenase rfbD
1533_slr0809-sacB ATGCCCAGCCATTTGCCAAATGCTA… dTDP-glucose 4-6-dehydratase rfbB
2550_slr0836-sacB ATGGCAAAAACTCCCATTTTGGTCA… dTDP-glucose 46-dehydratase rfbB
2131_slr0379-sacB GTGGCGATCGCCAAGGGAAATCAAG… dTMP kinase
0555_sll1837-sacB ATGGTTAATAAAGGGTTATGGTCTG… DUF1036 domain-containing protein
1764_slr1169-sacB ATGCAAGGTTTACTGCTCATTTTTT… DUF1049 domain-containing protein
0201_slr1110-sacB ATGGGGCCATTGTGGCCTTGTTGGA… DUF1092 family protein
1148_sll2002-sacB ATGGGCGTTACCTGGGAATTGGATT… DUF1092 family protein
1484_slr2125-sacB ATGACGAAAAACACAACCGTAGAGC… DUF115 domain-containing protein
1476_slr2117-sacB ATGCTAATCACAAAACAATTATTCT… DUF115 domain-containing protein
2211_sll0022-sacB ATGGAACCAAATCATTTCCCCGGTA… DUF1190 domain-containing protein
2657_sll0584-sacB ATGAAGCCGATGCGGGAATCTTCCC… DUF1230 family protein ycf36
1226_sll0846-sacB ATGAAATTTTCCCTCGAGTCTCTCT… DUF1232 domain-containing protein
2791_sll0661-sacB ATGTCTCACTTTAGCAATATCAAAA… DUF1257 domain-containing protein ycf35
3129_sll1106-sacB ATGAGTGACTTAATTGTTATCGGCT… DUF1269 domain-containing protein
1966_slr0142-sacB ATGAAACTATTATCAAGTGGGCAGT… DUF1275 domain-containing protein
2752_sll0781-sacB ATGACAACACCTTTAGTTCCTCCCT… DUF1348 family protein
0642_slr1699-sacB ATGGAATGGCGTGAAATTTCTGGCA… DUF1350 domain-containing protein
2406_sll0397-sacB ATGGAACTAATCATTTCCTGGCTAC… DUF1361 domain-containing protein
0579_sll0994-sacB GTGCCCTCAACCAACTTCTTTGTCC… DUF1449 family protein
1200_sll1620-sacB ATGGGTGCGCTATTGGCTGTGTTGC… DUF1499 domain-containing protein
1958_slr0404-sacB ATGCTTAAGATGCTCAAGAATTTAC… DUF1517 domain-containing protein
0296_sll0939-sacB ATGGAAATTTTGGATCATTATCTGG… DUF1622 domain-containing protein
0034_slr1493-sacB GTGGACCGATCGCCGCTAATGCCAT… DUF1636 domain-containing protein
3334_ssr5011-sacB ATGAAAAAACAAGTTAAAGTCAAAC… DUF167 domain-containing protein
1547_slr0816-sacB ATGGTTATACAGCCCATTTACTTAC… DUF177 domain-containing protein
3199_sll7031-sacB ATGACCCAGATCACCAAGTCCAAAG… DUF1778 domain-containing protein
3019_slr1583-sacB GTGTTTACTCGACTTGCCCAGCAAC… DUF1815 family protein
1845_slr0957-sacB ATGACAGCAAACAAATCCCATTACC… DUF1816 domain-containing protein
0178_slr1097-sacB ATGGTCACCATCACCGTTACCCCAG… DUF1817 domain-containing protein
0137_slr0249-sacB ATGCTGTCAAAAACTATTCATGAAG… DUF1818 family protein
3210_ssl7042-sacB ATGGGCACTGCCACTAGATATACGG… DUF1819 family protein
2710_sll0281-sacB ATGGTTGCCATCGATAATAATTTGA… DUF1822 family protein
0775_slr1896-sacB ATGGCTGAAGTTATCCCCAACAATC… DUF1823 family protein
0997_slr1362-sacB ATGAATGCTTCCGCTCAGTTGACGT… DUF1824 family protein
2050_sll0944-codA GTGCAATGCCTCGGAAAAATTTTCT… DUF1830 domain-containing protein pirC
1675_sll1378-sacB ATGGCATTAACCATGCCACGATTTT… DUF1838 domain-containing protein
0823_slr2070-sacB GTGCTAAATGTCCGGAGACTCCACC… DUF1868 domain-containing protein
0945_slr1236-sacB ATGACCCCATTGACTTTTCGTAACT… DUF192 domain-containing protein
3404_sll5081-sacB ATGAATGAGAAATTTTTCAAATTAG… DUF1963 domain-containing protein
0648_slr1702-sacB ATGTCCCTCCCCGTTCCCTCCACCA… DUF1995 family protein
0809_slr1206-sacB ATGGAAATGTTTGCCCCCGGTCAAG… DUF1997 domain-containing protein
1132_sll2013-sacB ATGCGAGTTACCTTTTCCGCCACCG… DUF1997 domain-containing protein
1224_sll0847-sacB GTGGGGGTTAACCGGCTAGGGATCT… DUF202 domain-containing protein
2064_sll0298-codA ATGGCGTCGATTAGTGGGGCAATGG… DUF2062 domain-containing protein
1747_sll1095-sacB ATGGCTGAACAGCATTTAATTATTT… DUF2064 domain-containing protein
0982_sll1352-sacB ATGGAAGTAAGCCAGAGCAAGCCTG… DUF2079 domain-containing protein
0205_slr1773-sacB ATGTTGAAAAATATTTTTGCCCTGA… DUF2092 domain-containing protein
3124_slr1186-sacB ATGTGGATTAGTGCCACCGTTGCGT… DUF2214 family protein
3010_sll1486-sacB ATGCATCCAAATCTTCCTTGGCTCC… DUF2231 domain-containing protein
3011_sll1485-sacB ATGTTCACCCTCAATGACCAAAATC… DUF2231 domain-containing protein
1681_sll1372-sacB ATGACTTTTTCTGCTGACCGATCGC… DUF2232 domain-containing protein
1861_slr1628-sacB ATGGCTACTCTCCAGGATTCCCGGG… DUF2237 family protein
3410_slr5087-sacB ATGCCAGTACCTGCAGAATATCAGC… DUF2267 domain-containing protein
3287_ssr8013-sacB ATGACAGCGCAAGAAAAACTCTACC… DUF2281 domain-containing protein
1760_ssl2138-sacB ATGACTACTGAAGCTGCCCTATTAA… DUF2281 domain-containing protein
0356_ssr1768-sacB ATGAAGATTAAGTACTTTACTGATA… DUF2283 domain-containing protein
0238_ssr3000-sacB ATGACCGATATTCAAAAACAGTTAC… DUF2288 domain-containing protein
1770_slr1173-sacB ATGGATAAAGCCATTCGGAAAATTT… DUF2330 domain-containing protein
3468_slr6013-sacB ATGGAAGGGGATGTTGTACAGCTAA… DUF2357 domain-containing protein
3527_slr6072-sacB ATGGAAGGGGATGTTGTACAGCTAA… DUF2357 domain-containing protein
1944_sll0364-sacB ATGTTACCGCCGACAATGGAAAGCC… DUF2358 domain-containing protein
0800_ssr2009-sacB ATGCTACCACCTCTAAAAAATCCAA… DUF2442 domain-containing protein
0330_slr1614-sacB ATGTTTTTACATGTTGTTTCTGCTT… DUF2442 domain-containing protein
1291_ssl3692-sacB ATGAACTCTCAGGTTAAAACTCCTT… DUF2442 domain-containing protein
3506_slr6051-sacB ATGAAAAGAGATATGGAATTAATCA… DUF2513 domain-containing protein
1375_slr0270-sacB ATGATCAATCCCCAACCAGACGAAA… DUF2605 domain-containing protein
3192_slr7024-sacB ATGACAATTTATGCCCTAGAACATC… DUF262 domain-containing protein
3323_sll5132-sacB DUF262 domain-containing protein
2523_sll0543-sacB ATGTTTAGTTTGAAAAATTATTCCC… DUF2752 domain-containing protein
2517_slr0569-sacB ATGGAGTCGGCCACCATGTCTTTTC… DUF2779 domain-containing protein
1690_slr1266-sacB ATGTCGAAGAATTTTAACTTGCTAT… DUF2808 domain-containing protein
2635_sll0470-sacB ATGTCTATGCCATCTATGCCTAAAT… DUF2808 domain-containing protein
2203_slr0356-sacB ATGACTAGACCAATTTCCCTGGGCT… DUF2808 domain-containing protein
0235_ssr2998-sacB ATGACGATTGAAATAGGTCAAAAAG… DUF2862 domain-containing protein
3083_sll1542-sacB ATGAAAACAGACAAATGGTTTTACG… DUF2887 domain-containing protein
1277_slr1261-sacB ATGGCTAGCTCAACCCAAACCAATG… DUF2892 domain-containing protein
1168_slr1814-sacB ATGGTTGCTGAACTCCACAAAACCA… DUF29 domain-containing protein
0506_sll1749-sacB ATGGAATCTCAACTGCAATTCCCCA… DUF29 domain-containing protein
1487_slr2128-sacB ATGATTTCTAACCCTTCTGTCCCAA… DUF29 domain-containing protein
1176_sll1692-sacB ATGGATAGTCTTCTTTATACTGAGG… DUF29 domain-containing protein
1935_slr0291-sacB ATGAAAAACCAACTTTACGAAACGG… DUF29 domain-containing protein
0806_slr1203-sacB ATGACAACACTGTATGAAACGGACT… DUF29 domain-containing protein
0320_slr0980-sacB ATGGAGCAACTTTACGAAAGAGATT… DUF29 domain-containing protein
1563_sll0803-sacB ATGAATACCCCCTCTTCGACCCAAC… DUF29 domain-containing protein
1564_sll0802-sacB ATGGGGCAAAAAACTACAACTTTGT… DUF29 domain-containing protein
1787_ssr2803-sacB ATGGACAACATTAAAATCGATCAGC… DUF29 domain-containing protein
0327_slr1611-sacB ATGGTTGAAGCAACAGCCCTCACCT… DUF29 domain-containing protein
1165_slr1811-sacB ATGATTGAGGAAGGTTGCATGGTTG… DUF29 domain-containing protein
2803_sll0743-sacB ATGACTTTAAAAATCAATGCCAATC… DUF29 domain-containing protein
1166_slr1812-sacB ATGGTTGCTGAACTCCGCAAAACAA… DUF29 domain-containing protein
2804_sll0742-sacB ATGGTCACTCAGATGAATACCAAAA… DUF29 domain-containing protein
1167_slr1813-sacB ATGGTTGCCGAACTCCGCAAAACTA… DUF29 domain-containing protein
2411_slr0416-sacB ATGGAAGAATTGTTAGAACTGAAAA… DUF29 family protein
1187_sll1630-sacB ATGGAAGAATTATTGGAATTAAAAC… DUF29 family protein
0741_ssl3446-sacB ATGGTAGTGTCCCAAAATTTTATTC… DUF2949 domain-containing protein
0400_ssr1155-sacB ATGAGTCAAACTAACTACTATCAGA… DUF2949 domain-containing protein
2613_sll0482-sacB ATGCCAATGGCGCTTTGGGGCATCG… DUF2974 domain-containing protein
0460_slr1053-sacB ATGGAATGGTTCGCCATTGCCCTGT… DUF2993 domain-containing protein
3138_slr0590-sacB ATGGGCTTAGCCGTTGACAGTAATT… DUF2993 domain-containing protein
1915_sll0272-codA GTGGCGCTCATTCCCTTTTACGTAT… DUF2996 domain-containing protein ndhV
2792_ssl1263-sacB ATGGGAGGATTGACCGTGAATCTAG… DUF2997 domain-containing protein
1546_slr0815-sacB GTGTTTTTTTGTTGCCCATTGTTCC… DUF3007 family protein
3360_slr5037-sacB ATGTATTACTTTAGTAAAAAATTGC… DUF302 domain-containing protein
1951_slr0397-sacB ATGGTTCTCACCCAGTTCGCCTCCA… DUF3038 domain-containing protein
3494_slr6039-sacB GTGGGTAATCAATTCTGGATATATG… DUF305 domain-containing protein
2741_sll0788-sacB GTGGGTAATCAATTCTGGATATATG… DUF305 domain-containing protein
3154_slr0598-sacB ATGACCGGTAAACAGTTACACCAGT… DUF3067 family protein
2289_slr0438-codA ATGAGCGAAGATTCCCCCAAACCAG… DUF3082 domain-containing protein
1432_sll1424-sacB ATGACCAGTGCCTATATTCTGGTTC… DUF3084 domain-containing protein
0098_slr0730-sacB ATGGCCAGCACCCCCATCCAGAGCG… DUF3119 family protein
3356_sll5033-sacB ATGAAAAGCATCTTAAGTTTTATCA… DUF3122 domain-containing protein
1120_ssr3188-sacB ATGAGCCTCCCCGCACCGGAAACTC… DUF3143 domain-containing protein
0736_ssl3451-sacB ATGGCTGATTTGTTTGTCGGTGCCC… DUF3148 domain-containing protein
1337_slr1724-sacB ATGTTATTTGCCCATGAGGCTTCCA… DUF3153 domain-containing protein
3069_slr1660-sacB ATGGCCCGCAGACCCCCACCCCGTT… DUF3172 domain-containing protein
2192_sll0318-sacB ATGAACCGCCAGGGAACCTATCAAG… DUF3318 domain-containing protein
1715_slr1287-sacB GTGGGGGCGGCCCTTGGTGGTTACG… DUF3326 domain-containing protein
3009_slr1579-sacB GTGAAACCCCGTTCTTTTTTCGTTC… DUF3352 domain-containing protein
3357_sll5034-sacB ATGCAAACTTTACCACAACGGATTT… DUF3365 domain-containing protein
2797_sll0658-sacB ATGATTGTTGTTAGTGACACTTCTG… DUF3368 domain-containing protein
2936_slr1431-sacB ATGATCCCACTGCTTTCCCCCATGA… DUF3370 domain-containing protein
1279_slr1263-sacB ATGCTTTCCCTGCTCACACCTCTAG… DUF3370 domain-containing protein
0303_sll0933-sacB ATGGCTGACCCCACCAATCGAGACC… DUF3464 family protein
1326_sll1608-sacB ATGACTTTCTCCTTCCCCATGGCCC… DUF3488 domain-containing protein
0796_slr1195-sacB ATGGAAGTGCAATTTCGGGAAGTAA… DUF3531 family protein
2392_sll0609-sacB GTGGATTTATCGTCAATCAGCCCAG… DUF3593 domain-containing protein
2872_sll0497-sacB ATGACCATGGCTAACTGGGAAAACT… DUF3598 family protein
0252_sll1656-sacB ATGAACCGACGCAACACCGAATTGG… DUF3611 family protein
1634_sll1879-sacB GTGAGTGAATCTCCCTTAACCATTG… DUF3685 domain-containing protein
3005_ssl2874-sacB ATGGAAATTCAACTCATCAACATTG… DUF370 domain-containing protein
2190_sll0319-sacB ATGAACTGGAAATTTTTCCCACACC… DUF3747 domain-containing protein
2019_sll1853-sacB ATGGCGATGGAAGTGCAACTATTGT… DUF3750 domain-containing protein
0887_slr1541-sacB ATGGCCACCACTGCCGATGAAGTTT… DUF3782 domain-containing protein
2384_slr0634-sacB ATGGCAACTACCGCTGATGAAGTTT… DUF3782 domain-containing protein
2905_slr0554-sacB GTGTTTTGCCCCTACAATGAGACTC… DUF3854 domain-containing protein
3205_slr7037-sacB ATGAAAGTTAGACCCCAGCACTGGC… DUF3854 domain-containing protein
1265_sll1151-sacB ATGTCAAAGTCCAAGTCCTCCGGGC… DUF389 domain-containing protein
3335_slr5012-sacB ATGAAAGTTCAGCTTGGTCTTGATA… DUF4007 family protein
0680_slr2011-sacB GTGCCACCGGGGAGAAGCGCACTAA… DUF4040 domain-containing protein
1780_slr1676-sacB ATGATGTTTCCTCTACTGGCCCTTG… DUF4079 domain-containing protein
3355_sll5032-sacB ATGAACTCAGAAAATCTCGCGGCTC… DUF4079 domain-containing protein
1247_sll1162-sacB ATGATGGATTTTCAAGATACCTGGG… DUF4079 domain-containing protein
3354_ssl5031-sacB GTGCACGTTTCTTTGAATGTGGTTC… DUF4079 super family conserved domain
2487_ssr1528-sacB ATGGCTAATACAACTAAAGGAGCCG… DUF4090 family protein
2092_sll0169-sacB GTGTTTATCCCCCTCGACTTTTATC… DUF4101 domain-containing protein
2537_sll0539-sacB ATGATGGAACTCAATTTTTTCCTTC… DUF4105 domain-containing protein
1965_slr0408-sacB ATGACTATCAATTTGGCCGATCGCC… DUF4114 domain-containing protein
0587_slr1028-codA ATGAGTATAACTTTATCTGATCGCC… DUF4114 domain-containing protein
3328_slr5005-sacB ATGGCCAATCCTTATGCCTCCTATG… DUF4114 domain-containing protein
3053_sll0723-sacB ATGGCTAACAAATTCAAATTTACTG… DUF4114 domain-containing protein
2163_slr0779-codA ATGAGCACCCTCCTTGGAATCCTCG… DUF4126 domain-containing protein
1313_slr2003-sacB ATGGACACCACCTACCAAAAAAGTA… DUF4129 domain-containing protein
0548_sll1929-sacB ATGCGCTTCCATCCCCTGGCCTTAA… DUF4131 domain-containing protein comEc
0923_slr1218-sacB ATGGTTATTAGCTCACGTCCCTTAA… DUF4168 domain-containing protein
2758_sll0775-sacB ATGAAAATTATCTTCAGTCCCAAAA… DUF4189 domain-containing protein
1345_slr1726-sacB ATGGCAGAAAAACTATCTTCCTCAC… DUF4230 domain-containing protein
2381_sll0614-sacB ATGTTTGATCCAACGGCAATTATTG… DUF4253 domain-containing protein
2920_slr1421-sacB ATGAGCCACACTTTTCAGCAGATTT… DUF4258 domain-containing protein
0727_slr1148-sacB ATGCGAATCCCTTACGAAAAAGCAA… DUF4269 domain-containing protein
2964_slr0655-sacB ATGCCCCAACCCATTACCCCCCAAC… DUF427 domain-containing protein
1153_ssl3291-sacB ATGGCCAAAGCAATCTGGAATGGGG… DUF427 domain-containing protein
3347_slr5024-sacB ATGAGTTACGACTTAATTTTTCTTC… DUF4276 family protein
0416_sll1515-sacB ATGCAATTAAGTTACCGTGGAGTCA… DUF4278 domain-containing protein