Plasmids and Cultures

This database contains entries for 3,572 known and predicted gene coding sequences in Synechocystis sp PCC 6803 based on the Kazusa genome sequence and nomenclature (http://genome.microbedb.jp/cyanobase/GCA_000009725.1). Plasmids for generating marked mutants and mutant strains can be searched for by gene Name/Accession (e.g. 'sll1226' or '1513_sll1226-sacB'),  gene homology (e.g. 'hydrogenase large subunit'), Gene ID (e.g. hoxH), or by a portion of the gene coding sequence Sequence (CDS).

Please note, the library is still being completed. Plasmids and/or marked mutants may not be available. Users can also search for available materials by Plasmids made or Mutant made.

Plasmids, mutants and the unmarking spacer plasmid pUC19K-UL are currently available on request. Regardless of the segregation status of the mutant, open reception of a cyanobacterial mutant strain we recommend 1-2 cycles of restreaking on a selection plate containing kanamycin (100 μg/ml).

Name CDS Gene Homology Gene ID Sort descending
0578_sll0995-sacB ATGACCGTAGCCCTCGACCGAGAAA… Uma2 family endonuclease
0326_slr1610-sacB GTGGCCCCAAGCAATTACCGAATTA… class I SAM-dependent methyltransferase
0136_sll0224-sacB ATGAAAAAATTTGCCTGTTTAGCCT… amino acid ABC transporter substrate-binding protein
0060_sll1061-sacB ATGGATCGAATAGAACAAAAAGTTA… hypothetical protein
3506_slr6051-sacB ATGAAAAGAGATATGGAATTAATCA… DUF2513 domain-containing protein
0124_slr0240-sacB ATGAGCTGGATTCCCCCCTACCGTC… hypothetical protein
3380_sll5057-sacB ATGGCTAGCACTATTCAACTGATTG… STAS domain-containing protein
3444_ssr5121-sacB ATGCTCAAATTTATAGGCATTGCAT… hypothetical protein
3318_slr8044-sacB ATGGGATCTATGACCGCCGAAGAAG… hypothetical protein
3128_sll1107-sacB ATGGTCAATATTTTCAGAATTTGGG… ABC transporter permease
3192_slr7024-sacB ATGACAATTTATGCCCTAGAACATC… DUF262 domain-containing protein
3002_slr1571-sacB ATGAACATTAAACTTCTCAATTCCC… TIGR00266 family protein
3066_slr1657-sacB ATGACTACGACAGAATTAACGGCGG… PleD gene product
2876_sll0494-sacB ATGGTAGCAAGAGCTATTTTGCTGC… hypothetical protein
2940_sll1367-sacB ATGGCTAAACGATCGCCTGCTTTAT… Crp/Fnr family transcriptional regulator
2750_slr0801-sacB ATGAAAAAAAGCCACTATTCCGTCA… MSMEG_0569 family flavin-dependent oxidoreductase
2814_slr0023-sacB ATGTTTTCTCCCAGTTCTGTTAGAA… hypothetical protein
2624_slr0514-sacB ATGGTTTTGGCAGGATCAAACGCCG… hypothetical protein
2436_sll0369-sacB ATGCAGAATTTTTTTGTCATTGGTT… hypothetical protein
2246_slr0217-sacB ATGGCAGACGCCATTGAAGTTAAAA… hypothetical protein
2310_slr0053-sacB ATGGCCCCTACCTCTGTTAACAAGA… rRNA maturation RNase YbeY
2120_slr0366-codA GTGACCTTTAACGGCACGACCTATA… Ig-like domain, DUF4114 (multiple), Ca2+-stabilized adhesin repeat, S (surface)-layer proteins similar to Pseudoalteromonas tunicata Slr4, Herpes virus major outer envelope glycoprotein (BLLF1)
2184_slr0345-sacB ATGACGAATACTAAGACTACCCCCA… hypothetical protein
1994_sll0135-sacB ATGGGGATGATAATCTCTATGGCGA… S-methyl-5'-thioadenosine phosphorylase
2058_sll0301-sacB ATGTCTTCTTTCCTCGTTTTTAGCT… pentapeptide repeat-containing protein
1868_ssl2982-sacB ATGACCAAGCGTAGTAATTTGGATT… DNA-directed RNA polymerase subunit omega
1616_slr1968-sacB GTGGTCATGGCAGTGCGTTTTTTGT… CHAT domain-containing protein
1680_sll1373-sacB ATGGGCCTGCTATTTCTGAAACTAA… hypothetical protein
1554_ssr1391-sacB GTGAAAAATACTGAAAACATAATGG… glutaredoxin family protein
1176_sll1692-sacB ATGGATAGTCTTCTTTATACTGAGG… DUF29 domain-containing protein
1240_slr0870-sacB ATGCAAATTATCTACGACGAATTCC… hypothetical protein
1114_slr1880-sacB ATGAAATCCACTGGAGAAACACTGA… aminoglycoside phosphotransferase family protein
0862_sll1725-sacB ATGAACCGTGCCTCCCCCATGACCC… ABC transporter
0672_sll1925-sacB ATGGCTGAAAATGGTCTGAACTGTG… hypothetical protein
0736_ssl3451-sacB ATGGCTGATTTGTTTGTCGGTGCCC… DUF3148 domain-containing protein
0420_sll1512-sacB ATGGAAAAGGTTTTCCCTCATACTG… HxlR family transcriptional regulator
0484_sll1642-sacB ATGATGGATTTAGGGGAGTGCTTGC… hypothetical protein
0358_slr1082-sacB ATGGCAAGTTTTCTAGCCTTACTGC… hypothetical protein
0168_slr1417-sacB ATGAGCCAAGCCACCGCTACCCAAG… iron-sulfur cluster assembly accessory protein
0028_slr1485-sacB ATGTTTAAATTTGCTCAAATTATTT… hypothetical protein
3474_ssr6019-sacB GTGGTTCCCGGCACTTTATGGTCGT… no conserved domains
0092_slr0723-sacB ATGTATAAAGCCATTGCCGATGCCA… hypothetical protein
3538_ssr6083-sacB ATGACTATTCAAGAAGCCAAAGAGA… hypothetical protein
3412_sll5089-sacB GTGGCCCAGCCAGCAGTCGAAGCCT… metal-dependent hydrolase
3349_sll5026-sacB ATGGCGGATACTCATAATTTTATTG… DNA phosphorothioation-associated putative methyltransferase
3413_sll5090-sacB ATGTCCATCGCTGGAAAATCCAAAG… hypothetical protein
3287_ssr8013-sacB ATGACAGCGCAAGAAAAACTCTACC… DUF2281 domain-containing protein
3099_ssl0832-sacB GTGGCGATGACTAGGAGGTGGGCAG… hypothetical protein
2909_sll0525-sacB GTGAAACTTTTGTTGGATACCCAGT… type II toxin-antitoxin system VapC family toxin
2783_sll0666-sacB GTGGATACCATGGGATTACTTCTCG… transposase
2847_sll0514-sacB ATGACTTTTTCCGTGCCGACCCAGG… MBL fold metallo-hydrolase
2721_ssl0511-sacB GTGAGACTTAAGATGGGGGGCAAAA… hypothetical protein
2531_slr0579-sacB ATGAAACGGAACTATCTACTGACGG… hypothetical protein
2279_sll0412-sacB ATGCCCTTGCCTTTGATGATGATTA… DUF445 family protein
2027_slr1939-codA ATGAATGCCCATGAAATTGCCCTGA… hypothetical protein
1965_slr0408-sacB ATGACTATCAATTTGGCCGATCGCC… DUF4114 domain-containing protein
1775_slr1670-sacB ATGAAAACATTGAATCGTATCCATC… hypothetical protein
1839_slr0951-sacB ATGCATTTACTAATTCCAGCGGCGG… 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
1523_sll1219-sacB ATGCACTACGCCATCCCCAAAACCT… hypothetical protein
1145_slr2141-sacB ATGGAAACCGGGCCACAGGTCTGGG… methylenetetrahydrofolate reductase
1019_ssr1480-sacB ATGTCCATTTATGTCGGGAACCTTT… RNA-binding protein
1083_slr1866-sacB ATGCAAAGCTGGCGACACAGGTTCC… hypothetical protein
0831_sll1965-sacB GTGTGGTTTCCCGAACTCAGGGCAA… hypothetical protein
0579_sll0994-sacB GTGCCCTCAACCAACTTCTTTGTCC… DUF1449 family protein
0327_slr1611-sacB ATGGTTGAAGCAACAGCCCTCACCT… DUF29 domain-containing protein
0137_slr0249-sacB ATGCTGTCAAAAACTATTCATGAAG… DUF1818 family protein
0201_slr1110-sacB ATGGGGCCATTGTGGCCTTGTTGGA… DUF1092 family protein
0061_sll1060-sacB GTGCCGTCAGCAGTTGGGGAATCAA… UPF0182 family protein
3507_sll6052-sacB ATGTTGAACCGTTTTTGGGTATGGT… hypothetical protein
3571_slr0743a-sacB YlxR family protein
3445_sll5122-sacB ATGAACAGTATTGCCCTGGTGGATT… hypothetical protein
3319_slr8045-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
3129_sll1106-sacB ATGAGTGACTTAATTGTTATCGGCT… DUF1269 domain-containing protein
3193_slr7025-sacB ATGAATATAACCTTTAAGTTTAACT… hypothetical protein
3003_slr1572-sacB ATGATGGAAGAAGAATCCCTAGAAA… TIGR00266 family protein
3067_slr1658-sacB ATGAGCACTGACCAAACCAACGTCA… hypothetical protein
2877_sll0493-sacB ATGAAAACTAGTCATTTTCTCAGTT… TrkA family potassium uptake protein
2751_sll0782-sacB GTGTTAGATTCTGCCCAGCTAATTT… putative protein kinase
2815_sll0044-sacB ATGGCGCTTCATTCTTCCTCTGTTG… CheW domain-containing protein
2625_slr0516-codA ATGAATAACAAAAAACTCAGCCTAA… pentapeptide repeat-containing protein
2499_slr0919-sacB GTGAAAAGTTGGCAAATCGAACTTT… thiol-disulfide oxidoreductase DCC family protein
2563_ssl1533-sacB ATGTCTGACCACACCGCCCAGATTA… hypothetical protein
2247_ssr0349-codA ATGTTGGTGCCCATTCTCATTTTTG… hypothetical protein
2121_slr0369-sacB ATGTTGCTGAGTATCTCCAACGTTT… cation or drug efflux system protein
1869_slr1635-sacB ATGATATCAAATTTTGGACATATTG… transposase
1933_slr0287-sacB GTGACTACCCTAAACTACGTTGAAT… KH domain-containing protein
1807_slr1690-sacB GTGTCAGCCAAAATTAGAGCGGTGA… NUDIX hydrolase
1617_sll1891-sacB ATGGTTAATCATCCCTTGCCGCTTT… DUF928 domain-containing protein
1681_sll1372-sacB ATGACTTTTTCTGCTGACCGATCGC… DUF2232 domain-containing protein
1491_slr2131-sacB ATGTTCGTTGATTTTTTCATTAAGC… cation or drug efflux system protein
1555_slr0820-sacB ATGAATAAGTGGTTTAGTAAAAAGT… glucosyltransferase
1365_slr0265-sacB ATGATAATTCGAGAATTTTACAGCA… transposase
1429_sll1426-sacB GTGATGAAATCTTTACTGCGGGGAA… hypothetical protein
1303_slr1992-sacB ATGCCATTACCCACTTCCCTGACCA… glutathione peroxidase
1177_sll1691-sacB ATGGAAGAATCCGTCGGAGTCAGTT… DUF4351 domain-containing protein
1115_sll1758-sacB ATGGTTGCTTCCCCCATCCACAGTC… phosphoglucosamine mutase
0925_slr1220-sacB ATGACCATTGATAACATCCGTCTTA… photosystem reaction center subunit H
0799_sll1118-sacB ATGCTGACTTCCACAACGGATATTG… YbjQ family protein
0673_slr2006-sacB ATGGTCGCCCTAGAGGCTTGTATTT… cation:proton antiporter
0547_sll1930-sacB ATGTTAAGAGAACTAATTAAGCTCT… transposase
0295_slr0967-sacB ATGATGAAAACGATCAAAAGTCCAT… pentapeptide repeat-containing protein
0359_slr1083-sacB ATGGTTACCCTGCTGAAATGGACAG… Uma2 family endonuclease
0169_sll1319-sacB ATGCGAATTTTATCTAATGTTAATC… DMT family transporter
0029_slr1488-sacB ATGCTCCTTTCGCCCCAGTCTAATC… ABC transporter
3475_ssr6020-sacB ATGTTTTTGTTTTTGATTTTAAGGA… hypothetical protein
3539_slr6084-sacB ATGTTGAGCCCTGAAATTTACGTTG… antirestriction protein
3476_slr6021-sacB ATGTTTAAAAAATTAGGTGAAGTAG… hypothetical protein
0094_slr0725-sacB GTGGCCCAGGTTGAATATCTGCGTC… type II toxin-antitoxin system YhaV family toxin
3540_ssr6085-sacB ATGCACCACGACACCAAAGAAGCGA… hypothetical protein
3350_ssl5027-sacB ATGAAGAATAATCGTTATTCTCCTG… HNH endonuclease
3414_ssl5091-sacB ATGGACTTTAACCCCAATGAGTGGC… hypothetical protein
3288_slr8014-sacB GTGAAAGTACTTCTCGACACCAATA… PIN domain-containing protein
3162_slr0605-sacB ATGGGCTTACTCGTCAACGGCATTT… glutathione S-transferase family protein
3100_sll0436-sacB GTGATCTTTGAGCAAGGCATTGAAA… SRPBCC family protein
2910_ssl1004-sacB ATGATCGGAGTTAGCGTTAATCCAG… type II toxin-antitoxin system Phd/YefM family antitoxin
2974_sll0623-sacB ATGGTGGTCGAGAAGCTATTGATTG… hypothetical protein
2784_sll0665-sacB ATGATAATCCGAGAATTTTACAGCA… transposase
2658_slr0624-sacB ATGCCTGTATCTCCCCTATCGGTTT… UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)
2596_slr0091-sacB ATGAATACTGCTAAAACTGTTGTTG… aldehyde dehydrogenase
2406_sll0397-sacB ATGGAACTAATCATTTCCTGGCTAC… DUF1361 domain-containing protein
2280_sll0410-codA GTGAGTGATTCCCCCAAGCCCCAAT… acyl-CoA thioesterase
2028_slr1940-codA GTGCCACAATTTCCCATGGGTTTTT… collagen-like protein
2092_sll0169-sacB GTGTTTATCCCCCTCGACTTTTATC… DUF4101 domain-containing protein
1902_sll0424-sacB ATGCACCAAGCCCAGGCCGAAAGGC… radical SAM protein
1966_slr0142-sacB ATGAAACTATTATCAAGTGGGCAGT… DUF1275 domain-containing protein
1714_ssr2130-sacB ATGACGACCCATTTCATCACTGCTG… hypothetical protein
1462_ssr3570-sacB ATGTCGGACGTGATGATCCGGGTAG… hypothetical protein
1336_sll1601-sacB ATGACGAAGCCATTGCCATATGACC… saccharopine dehydrogenase
1146_sll2003-sacB GTGATGGGCAGTTACCATCTGCTGG… glycosyltransferase family 39 protein
1210_slr0852-sacB ATGTTACACTTCGCCCAAATTACCA… hypothetical protein
0894_slr1546-sacB GTGTCCAACTTTGTGAGGAGTGAAT… anti-sigma factor
0642_slr1699-sacB ATGGAATGGCGTGAAATTTCTGGCA… DUF1350 domain-containing protein
0580_sll0993-sacB ATGGGATTGGGATCATCAAGTCAGG… potassium channel
0390_sll0647-sacB GTGGCCGCTAACCTAACCTTTCTTG… MBL fold metallo-hydrolase
0328_slr1612-sacB ATGTCTGCCATAACTGCCCAAGAGT… hypothetical protein
0138_slr0250-sacB ATGGTTCGTTTGCTCATGGTATTCC… hypothetical protein
0202_slr1772-sacB ATGGTCGGGGCGATCGCCCGATGGG… linear amide C-N hydrolase
0062_ssl2069-sacB ATGAAAACTTTATTACTAACCTGGC… hypothetical protein
3508_sll6053-sacB ATGAACAATCAAATTAGTTTGACTC… hypothetical protein
3572_sll1749a-sacB hypothetical protein
3446_sll5123-sacB ATGCCTGCCAACGTGCTACCAGAAA… translesion error-prone DNA polymerase V autoproteolytic subunit
3256_slr7088-sacB ATGGATTTAGCTGTTAGTAAGATTC… peptidase
3320_slr8046-sacB ATGTTAAGAGAACTAATTAAGCTCT… transposase
3130_slr1192-sacB ATGATTAAAGCCTACGCTGCCCTGG… zinc-containing alcohol dehydrogenase family
3194_slr7026-sacB GTGCTTAAAATGAATTCCCCAACTT… hypothetical protein
3068_slr1659-sacB ATGGAAATAACCACTGAAGACTATC… hypothetical protein
2942_ssr2439-sacB ATGCAAGCACAAACTTTCTCCCACC… hypothetical protein
2752_sll0781-sacB ATGACAACACCTTTAGTTCCTCCCT… DUF1348 family protein
2816_sll0043-sacB ATGCTCAACTCCGACATTCGTGACC… hybrid sensor histidine kinase/response regulator
2690_slr0120-sacB GTGGAGCCCCAGGGGGAAAGAAATG… TrmJ/YjtD family RNA methyltransferase
2500_slr0920-sacB GTGAATTTTCGTAACCCAGTTCCCA… NUDIX hydrolase
2564_slr0845-sacB GTGTCCGGTAAAAAAAATGATTACG… hypothetical protein
2248_sll0209-sacB ATGTTTGGTCTTATTGGTCATCTCA… long-chain acyl-[acyl-carrier-protein] reductase
1996_ssr0256-sacB GTGCTTAATGCCATTTTTTACATGC… transposase
2060_slr0326-sacB ATGCCATGGCTGGAGGGAGAGTTGC… No conserved domains found
1870_slr1636-sacB GTGATGAATTTGCTTTGCTATAGGA… Predicted metal-dependent hydrolase domain (super family DUF309)
1682_sll1371-sacB ATGGGCACTAGTCCCCAAAATTCAG… catabolite gene activator protein
1492_sll1241-sacB ATGGGTATTACATCAAAAATATTTG… hypothetical protein
1556_ssl1507-sacB ATGAATAACGCCCCCATTCATCGAA… transposase
1178_slr1819-sacB ATGGAAGCCAAGGAATTGGTCCAAC… hypothetical protein
1116_ssr3184-sacB ATGCCCCATACCATTGTTACGGAAA… ferredoxin
0926_slr1222-sacB ATGATTGGACAGGTAGTTAGGCTTG… hypothetical protein
0800_ssr2009-sacB ATGCTACCACCTCTAAAAAATCCAA… DUF2442 domain-containing protein
0738_sll1825-sacB GTGCCAGACTGGACTAAAAATAATC… aklaviketone reductase
0612_ssr2315-sacB ATGTTTAAACCCAGCTTACTTTTGT… hypothetical protein
0422_sll1511-sacB ATGACGCTGTTAAGTAAACTCCTAG… hypothetical protein
0296_sll0939-sacB ATGGAAATTTTGGATCATTATCTGG… DUF1622 domain-containing protein
0360_slr1084-sacB ATGCAACTTAATCAATACCAGCAAG… hypothetical protein
0170_sll1318-sacB ATGCCCTCGTCACCAGTTCAATTTA… hypothetical protein
3477_slr6022-sacB GTGGTTGCCCCTGCGGGGCATTTTT… hypothetical protein
0095_slr0727-sacB ATGATGACTGACTATCCTACCAATT… hypothetical protein
3541_ssr6086-sacB ATGTATTTTGACCGTTTCGACATTG… hypothetical protein
3351_sll5028-sacB GTGGGAAGCAGTATTGAATCCGTTG… hypothetical protein
3415_ssr5092-sacB ATGATTAACCAAGCTATTCAATTAG… hypothetical protein
3225_slr7057-sacB ATGACAAGGACTCTGCCACCTGTGT… HNH endonuclease
3289_slr8015-sacB ATGTCAAAAACCATAGCCATAGTCA… ParA family plasmid partitioning protein
3163_slr0606-sacB ATGCGCATCCTAGCCCTTGTCCCCG… lipopolysaccharide heptosyltransferase family protein
3037_sll0733-sacB ATGGAATTTACCTTTTTACTACCCC… DUF4278 domain-containing protein
2911_sll0524-sacB ATGGTAGTCTACGCCAGTCCTACTT… hypothetical protein
2785_sll0664-sacB ATGATAGCTGATAGTTTTTTACTTA… hypothetical protein
2659_slr0625-sacB ATGCTCAGTTTAATTAATGTTTTAT… sodium:glutamate symporter
2723_sll0800-sacB ATGTTTGACAATCTGTGCAAATTCC… contain a domain for predicted transposase
2533_slr0580-sacB ATGAAATATTCCAGCTTCCTTAAAC… aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
2597_slr0092-sacB ATGGCCGACCGTCCCCAGTTGAGTA… glycosyltransferase
2407_sll0396-sacB ATGAGTCACCGTGTTCTAGTTGTGG… OmpR subfamily
2281_sll0409-sacB ATGGATAAACCCTATCACGTTAAAT… o-succinylbenzoate synthase
2345_slr0479-sacB ATGACTGCCCCCTATTTTTCCCTCA… PD-(D/E)XK nuclease family protein
2219_slr0006-codA ATGGTTACACTAGATAAAACTGCAA… Glutamate/glyoxylate aminotransferase
2029_ssr3300-codA GTGGTGGTGCAGGTTTACGGTTCTA… hypothetical protein
2093_sll0168-sacB GTGTTGATGAAATGTTGGTTAGCGG… hypothetical protein
1903_sll0423-sacB ATGTTGACCCACCACCGTCGTCCGG… hypothetical protein
1967_slr0143-sacB ATGTCGCCGATCGCCCTCAATTTAT… beta transducin-like protein
1841_slr0953-sacB ATGCGACAGTTATTGCTAATTTCTG… sucrose-phosphate phosphatase
1715_slr1287-sacB GTGGGGGCGGCCCTTGGTGGTTACG… DUF3326 domain-containing protein
1525_sll1217-sacB ATGTCAGAGCTTCAAACCCTGATCC… hypothetical protein
1463_ssr3571-sacB ATGGAAACCATTAATTATCAACAAT… type II toxin-antitoxin system Phd/YefM family antitoxin
1273_slr1257-sacB ATGTTAATCCTGCGTCGCCTAATAC… transporter substrate-binding domain-containing protein
1337_slr1724-sacB ATGTTATTTGCCCATGAGGCTTCCA… DUF3153 domain-containing protein
1021_slr0878-sacB ATGACTCCCCATGTGGTGAAAGCTG… M23 family metallopeptidase
0895_slr1547-sacB ATGATTAATTTGGTTGAATTTAATC… permease