Plasmids and Cultures

This database contains entries for 3,572 known and predicted gene coding sequences in Synechocystis sp PCC 6803 based on the Kazusa genome sequence and nomenclature (http://genome.microbedb.jp/cyanobase/GCA_000009725.1). Plasmids for generating marked mutants and mutant strains can be searched for by gene Name/Accession (e.g. 'sll1226' or '1513_sll1226-sacB'),  gene homology (e.g. 'hydrogenase large subunit'), Gene ID (e.g. hoxH), or by a portion of the gene coding sequence Sequence (CDS).

Please note, the library is still being completed. Plasmids and/or marked mutants may not be available. Users can also search for available materials by Plasmids made or Mutant made.

Plasmids, mutants and the unmarking spacer plasmid pUC19K-UL are currently available on request. Regardless of the segregation status of the mutant, open reception of a cyanobacterial mutant strain we recommend 1-2 cycles of restreaking on a selection plate containing kanamycin (100 μg/ml).

Name CDS Gene Homology Gene ID Sort descending
0059_sll1062-sacB ATGTCTAAATTTAGCAAATTACTAG… hypothetical protein
3535_slr6080-sacB ATGTTTAAAAAATTAGGTGAAGTAG… hypothetical protein
3409_sll5086-sacB ATGACAACCTCGCCTAATCAGACCC… GntR family transcriptional regulatory protein
3283_sll8009-sacB GTGCAAGACATAGATGGTAACGAGG… type I restriction-modification system M subunit
3347_slr5024-sacB ATGAGTTACGACTTAATTTTTCTTC… DUF4276 family protein
3157_slr0601-sacB ATGTCCACGGAAAACCCCATCGAAA… hypothetical protein
3221_ssl7053-sacB ATGTTGGAAGAAACGATCGCCGTAA… hypothetical protein
3095_sll0442-sacB ATGGCTCTAATAGCAAGACTGATCG… hypothetical protein
2905_slr0554-sacB GTGTTTTGCCCCTACAATGAGACTC… DUF3854 domain-containing protein
2717_slr0316-sacB ATGGCAATTCTGAAACAATTAGGGA… CPBP family intramembrane metalloprotease
2527_ssl1045-sacB GTGGCCATCGAGATTGAACATAAAT… CYTH-like phosphotase domains
2465_slr0209-sacB ATGGCTAGATCAAACAAGGACGATA… hypothetical protein
2275_slr0431-codA/sacB GTGCGACCAAAATTTTTTTCTAGGA… SIMPL domain-containing protein
2213_sll0021-codA ATGTTAAAAGTCCTGCATCTTTCTG… exonuclease SbcCD subunit D
2023_slr1937-sacB ATGTTAAGAGAACTAATTAAGCTCT… transposase
2087_sll0174-codA ATGAATTTATTTCGGAAATGTTTAC… ABC transporter substrate-binding protein
1897_ssr0761-sacB ATGGGGGAAACTTTGCCCCAACAAT… type II toxin-antitoxin system prevent-host-death family antitoxin
1961_sll0355-sacB ATGCAAATTGAATCAAAAACAAATA… DMT family transporter, IS1 family transposase
1771_ssr1951-sacB ATGGATCCCTTAACCAAATTAGTTT… Hypothetical protein
1835_slr0950-sacB ATGGCCAAAGCAGATAAACAACGAC… TlyA family RNA methyltransferase
1645_sll1871-sacB ATGGTCTCAATTATTAAGTCGGTGC… sensory transduction histidine kinase
1709_slr1283-sacB ATGTACGATACTAAAAGTCCAGTAT… transposase
1583_slr1344-sacB ATGCGCCTATGGTTTCGTCCCCCCT… ABC transporter permease
1457_slr1523-sacB ATGACAGCTTACTTGCGAGAGCAAG… transposase
1267_sll1150-sacB GTGATTATCCTAGTCAAAAATCCAC… membrane protein
1141_sll2006-sacB ATGCAAATTACTCTAGACATCCCCG… hypothetical protein
1079_sll1780-sacB ATGATATCAAATTTTGGACATATTG… transposase
0889_slr1543-sacB GTGAATTTTGACCGCATTTTTGCTT… DNA-damage-inducible protein: MATE family efflux transporter
0953_ssr2060-sacB GTGGTAGGATTAGGCGAAAATAATC… 2-hydroxy-6-oxohepta-24-dienoate hydrolase
0827_sll1967-sacB ATGACCCAAAGTAATAATTTCGCCA… RNA methyltransferase
0637_slr1397-sacB ATGGATAATCTAACCGACTTTGCAT… hypothetical protein
0701_ssl3615-sacB ATGAGCACCATCGAGCAAGTTCTCA… hypothetical protein
0511_sll1945-sacB ATGCACATCAGCGAACTGACCCACC… 1-deoxy-D-xylulose-5-phosphate synthase
0449_slr1043-sacB GTGGGGAAATCTATGGTTAGTTCTA… hypothetical protein
0135_sll0225-sacB GTGGGGATTAATTTGCCCCAGCCCT… hypothetical protein
0277_slr1302-sacB GTGCCCTGGCATTCTGGCCTGGATT… CO2 hydration protein
0027_slr1484-sacB ATGTCAATCTCTAATTTCTGCCTGA… TonB family protein
0091_slr0722-sacB ATGTTGGCCAAAGCGTTTGCGGGGT… 16S rRNA (uracil(1498)-N(3))-methyltransferase
3503_ssr6048-sacB ATGACAATAACAACACAAGCTCAAA… hypothetical protein
3504_slr6049-sacB GTGAGGATGATTAAAGTTTTGGTAG… PIN domain-containing protein
3378_slr5055-sacB ATGAATTCCATCACGCTTCTCAACA… glycosyltransferase
3442_slr5119-sacB ATGTTTGACAATCTGTGCAAATTTC… Rpn family recombination-promoting nuclease/putative transposase
3252_ssr7084-sacB ATGGCATCCCTTGTTGAAATCAAAG… hypothetical protein
3316_sll8042-sacB ATGTTAAGAGAACTAATTAAGCTCT… transposase
3190_ssl7022-sacB ATGGCTGATTCTCAAATAGCTGTTT… No conserved domains
3000_sll1488-sacB ATGAACTCTTTCTGGCGAACTTGTC… M23 family metallopeptidase
2874_sll0496-sacB GTGATGTTCTTGTCTAAAACCTTGA… YjgP/YjgQ family permease
2938_sll1329-sacB GTGATGATGGCCATATTGCCCTTGT… inositol monophosphatase
2812_slr0022-sacB ATGGCAACTTGGTATTGCATGCAGG… YkgJ family cysteine cluster protein
2622_sll0477-sacB GTGCTGGATAATTGCAAGAGATTAT… MotA/TolQ/ExbB proton channel family protein
2686_ssl0172-sacB ATGACTCGAATACCAGATATTAAAT… transposase
2496_slr0915-sacB ATGAGCACTAAGCTTAAGGGTGACA… putative endonuclease
2434_sll0371-sacB ATGACTTTAACAAGCGAGTCACTTC… hypothetical protein
2244_sll0210-sacB ATGTCCCCCCGCCAATTAAATTTTC… undecaprenyl-diphosphate phosphatase
2118_slr0363-sacB ATGGCCGGGGAATTTCCACCGCCAA… DUF721 domain-containing protein, Ig-like domain-containing protein
2056_slr0324-codA ATGACTAAAACTTTTCCCCTTTCCG… OppC in a binding protein-dependent transport system
1866_slr1634-sacB ATGGAGCTTTCGTCAAGGGAAGGAG… hypothetical protein
1930_slr0286-sacB ATGATTAATCCGATCAAGGCTGTCA… hypothetical protein
1740_sll1103-sacB ATGGTGGACTACGATTGGTTAGGGC… TRAP transporter large permease subunit
1804_sll1555-sacB ATGCCCAAAATTTTGATAATTGAAG… hybrid sensory kinase
1678_sll1376-sacB ATGGCAATGGCTTGGTTAATGGGGT… bifunctional sterol desaturase/short chain dehydrogenase
1552_slr0818-sacB ATGGGGGAAACTGTCATGCGTCTCA… hypothetical protein
1426_sll1428-sacB ATGGAGTCCAATTTTTTAACAACTA… bile acid:sodium symporter family protein
1364_slr0264-sacB ATGCGATCGCCTTTGTTGGCCCCGT… esterase
1174_sll1693-sacB ATGGCTGAGATGAAGCGAGATTATT… methyltransferase domain-containing protein
1238_slr0868-sacB GTGGAACTATCATTGTTTTACCAAG… hypothetical protein
1048_sll0860-sacB ATGCTCAGCTTGAGTTATGTCGTCG… Cyanobacterial Signature Protein
1112_sll1761-sacB GTGAACAGGCTGAGCAAAATGTATG… DUF922 domain-containing protein
0986_sll1350-sacB ATGCCCAATGAGTTGTCCAATTTAC… hypothetical protein
0796_slr1195-sacB ATGGAAGTGCAATTTCGGGAAGTAA… DUF3531 family protein
0670_sll1926-sacB ATGGTTTTGGGCTTTGGGGCAGGGA… hypothetical protein
0482_slr1762-sacB GTGTATCTGGAAAAACTCACCGTGG… HAD family hydrolase
0168_slr1417-sacB ATGAGCCAAGCCACCGCTACCCAAG… iron-sulfur cluster assembly accessory protein
0060_sll1061-sacB ATGGATCGAATAGAACAAAAAGTTA… hypothetical protein
0124_slr0240-sacB ATGAGCTGGATTCCCCCCTACCGTC… hypothetical protein
3536_slr6081-sacB GTGGTTGCCCCTGCGGGGCATTTTT… hypothetical protein
3410_slr5087-sacB ATGCCAGTACCTGCAGAATATCAGC… DUF2267 domain-containing protein
3284_ssl8010-sacB ATGAACCCAGTTAGCCACAACAACA… type I restriction-modification system M subunit
3348_ssl5025-sacB ATGCTACAGAACTTAGATCGAATCA… DUF433 domain-containing protein
3158_slr0602-sacB ATGCTTTCCTCCCTGTTCTCCGGTG… hypothetical protein
3222_slr7054-sacB GTGTATATACATTTGAAGAGGGGGC… DNA-binding protein
3032_sll0736-sacB ATGTGGACTCCCTGGCATTATCTCG… hypothetical protein
3096_sll0441-sacB GTGCGCATAATTTTGGTTGTCGCAC… hypothetical protein
2906_sll0529-sacB ATGACCGTCGCCTCCACCGCCCCTG… phosphoketolase
2780_slr0708-sacB ATGTCCCAAAATTTTTTTGCCAATT… hypothetical protein
2654_sll0586-sacB ATGACAAGAACTGTGATTGTGGTCG… NAD(P)/FAD-dependent oxidoreductase
2718_slr0317-sacB ATGAACCGGAAGATTTTAGTAACTG… SDR family oxidoreductase
2592_slr0086-sacB GTGCCCTACGCCATTGATTTTGGTA… Hsp70 family protein
2402_sll0601-sacB ATGAAACCGTATTTAGCCGCTGCCC… carbon-nitrogen hydrolase family protein
2276_ssl0788-sacB GTGGAACTTTTTGACCTAGTGGAAG… hypothetical protein
2340_slr0474-sacB ATGTCCGACGAATCTAATCCCCCCA… CheY subfamily
2024_sll1849-sacB ATGGAAATCTTTAATAATTGGCAAA… aromatic ring-hydroxylating dioxygenase subunit alpha
1962_sll0354-sacB ATGGCTACTGAACTACTTTTTAATC… DUF4281, DUF2442 domain-containing protein
1772_slr1174-sacB ATGGGTCATTTTCCCCACAAACTGC… multidrug ABC transporter permease
1836_sll0911-sacB ATGAATATTCAAGAAATTCAAACTA… hypothetical protein
1646_slr1982-sacB ATGGAATCTATGGCTAAGGTTCTCC… response regulator
1710_sll1170-sacB ATGTCCTCCTATCTTGTCAACGAAA… diguanylate cyclase
1584_sll1251-sacB ATGCCCTCCCACCCATCCCGCAGTA… Uma2 family endonuclease
1458_slr1524-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
1268_slr1253-sacB GTGTATTGTTCCATTGTCAGACCAG… hypothetical protein
1080_slr1863-sacB GTGATCGCCGATTTAAATACGGTTA… hypothetical protein
0638_slr1398-sacB GTGCGTCGCCCAATACAAATTCATC… hypothetical protein
0702_sll1911-sacB ATGGCCGGATTATTTGGCTTATTTG… hypothetical protein
0386_sll0651-sacB ATGTTAAGAGAACTAATCAAGCTCT… transposase
0136_sll0224-sacB ATGAAAAAATTTGCCTGTTTAGCCT… amino acid ABC transporter substrate-binding protein
0342_slr1068-sacB ATGAAAACAACTATTAACGACTACA… hypothetical protein
0028_slr1485-sacB ATGTTTAAATTTGCTCAAATTATTT… hypothetical protein
0092_slr0723-sacB ATGTATAAAGCCATTGCCGATGCCA… hypothetical protein
3505_slr6050-sacB ATGAAATTGAACCGTACAAGTACCC… hypothetical protein
3379_slr5056-sacB GTGTTTCGGGGTTGCCTAGCCAAAG… glycosyltransferase
3443_ssr5120-sacB GTGCCACTAAATATAGACCCCACAG… no conserved domains
3317_sll8043-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
3127_slr1189-sacB GTGGGAGGAACAACAGGCGGTGGAA… homocysteine S-methyltransferase
3191_slr7023-sacB ATGCCTAAACTTAAAAAGCTTACTC… hypothetical protein
3001_slr1570-sacB GTGCTCTACAAAATTCGCCACTATC… TIGR00266 family protein
2939_slr1451-sacB GTGACCCAGGTTTGGTTTCCCTCCA… hypothetical protein
2749_sll0783-sacB ATGCCAGAGGTAACTAAGCCAGCTC… MSMEG_0572 family nitrogen starvation response protein
2623_slr0513-sacB ATGACAACTAAGATTTCCCGGCGGA… Fe(3+) ABC transporter substrate-binding protein
2687_sll0092-sacB ATGACAAAGACAAGAGAGGCGAAAA… transposase
2561_ssr1425-sacB ATGTGTATTTGTGTGAACTGCCATT… hypothetical protein
2309_ssr0109-sacB ATGAGTGATTTACCCACCCCGGAAG… Cyanobacterial Signature Protein
2119_slr0364-codA ATGCCTAACTCGACCTTGTTCGTCC… DUF 4347, Ig-like domains, Ca2+-stabilized adhesin repeats (multiple)
2057_slr0325-sacB ATGATTCGTCCAGTTCCCGATGCTA… MEKHLA domain-containing protein
1867_sll1532-sacB ATGTTTAAGCCCCTTTTTCCCCTGA… hypothetical protein
1931_sll0260-sacB ATGTTTTCCTCTTCTGTTGAGCTGG… HlyC/CorC family transporter, hemolysin
1741_sll1102-sacB GTGGACAAATTACTCAAAATTGCCC… TRAP transporter small permease subunit
1615_sll1892-sacB ATGATTACCCCACCCAGCTCACCCA… hypothetical protein
1427_slr1503-sacB ATGACAATTAGCACCACAGATACTT… aldo/keto reductase
1301_slr1990-sacB GTGATTCCCCTTTTAACCACCGCCT… Cyanobacterial Signature Protein
1175_slr1818-sacB ATGACCACCACCCTCGACGAAGTGC… hypothetical protein
1239_slr0869-sacB ATGTCCAAGATTGCGCCCCAATGTC… hypothetical protein
0923_slr1218-sacB ATGGTTATTAGCTCACGTCCCTTAA… DUF4168 domain-containing protein
0797_slr1196-sacB ATGTATCCATCCTCGTCCCCGGGCC… hypothetical protein
0861_sll1726-sacB ATGATGGCCGAAATTTTCTCTGATC… phosphotransferase
0671_slr2005-sacB ATGAAACGACGAAAATTTATTCGTA… hypothetical protein
0735_sll1068-sacB ATGGCATCAACTGTAAATCGCCTTT… hypothetical protein
0483_slr1763-sacB ATGCAGTGCCGTGTTTGTGATTCTA… class I SAM-dependent methyltransferase
0169_sll1319-sacB ATGCGAATTTTATCTAATGTTAATC… DMT family transporter
0311_sll0925-sacB ATGGTTGCGCTCTCCTCCAATGGAT… Uma2 family endonuclease
0061_sll1060-sacB GTGCCGTCAGCAGTTGGGGAATCAA… UPF0182 family protein
3473_ssl6018-sacB ATGCTCAAATTTATAGGTATTGCAT… hypothetical protein
3537_ssl6082-sacB ATGAGTGGCCGAGGTCGTCCTGGTG… hypothetical protein
3411_slr5088-sacB ATGAAGTTAATGGTTATTGGTGCAA… SDR family oxidoreductase
3285_sll8011-sacB ATGTTAGGTTTTCTATTGGATGAAC… hypothetical protein
3159_sll0563-sacB ATGTCAACCCTACTTACCGACCCCC… hypothetical protein
3223_sll7055-sacB GTGGGCTCTAGTTACCCCTTTACCT… hypothetical protein
3033_sll0735-sacB ATGGCTCTTGGCTATGTTGCCCTTG… glycoside hydrolase family 57 protein
2907_sll0528-sacB ATGTTAAGCCTCAGTTTAGGGGGGC… zinc metalloprotease
2971_sll0625-sacB ATGCCCAATCCTTCTTTCCTGCCTC… class I SAM-dependent methyltransferase
2781_sll0668-sacB ATGATGGACTATTCCAGAATAGAAA… transposase
2719_slr0318-sacB ATGAAAAACAAGATGAAACAGGACA… endoribonuclease L-PSP
2529_slr0575-sacB ATGCTTCCTAAAATTTCTTTGGCCG… thylakoid membrane protein
2467_ssr0332-sacB ATGGGCGAATCAAAGCGTCGTAAAC… Cyanobacterial Signature Protein
2277_ssl0787-sacB ATGGCCAGCGGCACTGACCCCGGTT… hypothetical protein
2089_sll0172-codA ATGAAAATTAATTTAATTTTTATGA… hypothetical protein
1899_slr0443-sacB GTGTTTGTTTGCGAACAGCCCATCT… hypothetical protein
1837_sll0910-sacB ATGACTGATAACTACAAACAAAATT… tetratricopeptide repeat protein
1647_slr1983-sacB ATGATGAATCCTTCTATTAATTCAG… regulatory components of sensory transduction system
1711_sll1169-sacB ATGACCAATAATCCTCCCATAAAAT… Crp/Fnr family transcriptional regulator
1521_ssr2227-sacB ATGCCATCTTTTATTTACAGCGCAC… transposase
1585_ssl2471-sacB ATGGGTTGGTTGATTAATCCGAAAG… Endonuclease, Uma2 family
1395_slr2084-sacB ATGGCCGTTAATCTAGAAACTCGCA… Uma2 family endonuclease
1459_sll1411-sacB ATGTCTAAATCTCCCAATCGGGAAT… DUF86 domain-containing protein
1333_slr1721-sacB ATGATGGAACGTTTTTCCCCTACTA… hypothetical protein
1143_ssl3829-sacB ATGGTCGATCCACTGATGTACCAAG… chlororespiratory reduction protein 7
1017_sll0875-sacB ATGGACAATTCCCTGCTCAGCGAAA… TIGR00297 family protein
1081_slr1864-sacB ATGAATTCATTCTTGATTATTATTT… AEC family transporter
0577_ssr1698-sacB ATGGCTGATCCCCTCACCCCTGCTA… HugZ family protein
0387_sll0650-sacB ATGGCTTACAGTTTAGATTTAAGGC… transposase
0451_slr1045-sacB ATGTCGGATCGAGGCTCTCGCCACT… ABC transporter permease
0137_slr0249-sacB ATGCTGTCAAAAACTATTCATGAAG… DUF1818 family protein
0201_slr1110-sacB ATGGGGCCATTGTGGCCTTGTTGGA… DUF1092 family protein
0343_slr1069-sacB GTGGGCAATGAACAAAAAACAGTAT… FkbM family methyltransferase
0029_slr1488-sacB ATGCTCCTTTCGCCCCAGTCTAATC… ABC transporter
0094_slr0725-sacB GTGGCCCAGGTTGAATATCTGCGTC… type II toxin-antitoxin system YhaV family toxin
3506_slr6051-sacB ATGAAAAGAGATATGGAATTAATCA… DUF2513 domain-containing protein
3380_sll5057-sacB ATGGCTAGCACTATTCAACTGATTG… STAS domain-containing protein
3444_ssr5121-sacB ATGCTCAAATTTATAGGCATTGCAT… hypothetical protein
3318_slr8044-sacB ATGGGATCTATGACCGCCGAAGAAG… hypothetical protein
3128_sll1107-sacB ATGGTCAATATTTTCAGAATTTGGG… ABC transporter permease
3192_slr7024-sacB ATGACAATTTATGCCCTAGAACATC… DUF262 domain-containing protein
3002_slr1571-sacB ATGAACATTAAACTTCTCAATTCCC… TIGR00266 family protein
3066_slr1657-sacB ATGACTACGACAGAATTAACGGCGG… PleD gene product
2876_sll0494-sacB ATGGTAGCAAGAGCTATTTTGCTGC… hypothetical protein
2940_sll1367-sacB ATGGCTAAACGATCGCCTGCTTTAT… Crp/Fnr family transcriptional regulator
2750_slr0801-sacB ATGAAAAAAAGCCACTATTCCGTCA… MSMEG_0569 family flavin-dependent oxidoreductase
2814_slr0023-sacB ATGTTTTCTCCCAGTTCTGTTAGAA… hypothetical protein
2624_slr0514-sacB ATGGTTTTGGCAGGATCAAACGCCG… hypothetical protein
2436_sll0369-sacB ATGCAGAATTTTTTTGTCATTGGTT… hypothetical protein
2246_slr0217-sacB ATGGCAGACGCCATTGAAGTTAAAA… hypothetical protein
2310_slr0053-sacB ATGGCCCCTACCTCTGTTAACAAGA… rRNA maturation RNase YbeY
2120_slr0366-codA GTGACCTTTAACGGCACGACCTATA… Ig-like domain, DUF4114 (multiple), Ca2+-stabilized adhesin repeat, S (surface)-layer proteins similar to Pseudoalteromonas tunicata Slr4, Herpes virus major outer envelope glycoprotein (BLLF1)
2184_slr0345-sacB ATGACGAATACTAAGACTACCCCCA… hypothetical protein
1994_sll0135-sacB ATGGGGATGATAATCTCTATGGCGA… S-methyl-5'-thioadenosine phosphorylase
2058_sll0301-sacB ATGTCTTCTTTCCTCGTTTTTAGCT… pentapeptide repeat-containing protein
1868_ssl2982-sacB ATGACCAAGCGTAGTAATTTGGATT… DNA-directed RNA polymerase subunit omega
1616_slr1968-sacB GTGGTCATGGCAGTGCGTTTTTTGT… CHAT domain-containing protein
1680_sll1373-sacB ATGGGCCTGCTATTTCTGAAACTAA… hypothetical protein
1554_ssr1391-sacB GTGAAAAATACTGAAAACATAATGG… glutaredoxin family protein
1176_sll1692-sacB ATGGATAGTCTTCTTTATACTGAGG… DUF29 domain-containing protein